Array 1 98823-97593 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAGF01000002.1 Geobacillus zalihae strain SURF-189 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 98822 30 100.0 37 .............................. TTGCGGAAGGCGCTCGAAACAGACCGGAAGTGAGCGC 98755 30 100.0 39 .............................. GGGCGATAGATGATTGTGATAACGTTGGGGCGTATGTGA 98686 30 100.0 38 .............................. AACGGTTTACCTCTGATGCTTTTCTTTGAAGGAAACGA 98618 30 100.0 35 .............................. AAAAAGCGTTTAGCCGCCTGAATTAATTCTCTACA 98553 30 100.0 36 .............................. CTTTTTGCAGATAGAGTAATCGAAAATGACGCTAAA 98487 30 100.0 36 .............................. TATGTTTGAGAATGTTTTGGTCGTAGAGGAAGGCGG 98421 30 100.0 39 .............................. AAACAGTTGTTTTTCCGTGACCCATTGAAGCGTCACAAA 98352 30 100.0 36 .............................. TTTCCAACGATAATAATCTAAACAAAGTAAAACATC 98286 30 100.0 37 .............................. ATGCGAAAAAATATTTCGAGGCCGACGCTGATCGGCT 98219 30 100.0 36 .............................. ATTAGTTCTATGCGGTCGTTGTATGAGGGCAAGGTG 98153 30 100.0 37 .............................. AATCATGCGGTTTAATCGCTGTCGTTTATCGCCAATC 98086 30 100.0 36 .............................. ATAGGAACAGTCATGCCGGCAATATGACCTGTCGCG 98020 30 100.0 36 .............................. AAATGCGGGTTTTCCGCCGTTTTCTTTGGTGCCGGA 97954 30 100.0 35 .............................. CCTTGAGACAATTCTATTTTCTTCATCCTCCTTCT 97889 30 100.0 34 .............................. ATGCAAAAGTAAATGAAGAAATAAATGTATTGAA 97825 30 100.0 38 .............................. AAAAAAGACAACCATTTGAAAAATGACGCGTTATTCGC 97757 30 100.0 36 .............................. ATAGGAACAGTCATGCCGGCAATATGACCTGTCGCG 97691 30 100.0 39 .............................. GGAGATACTGGTGTTCTAGGAATGTACCCAGTATCGCCT 97622 30 93.3 0 .....................A.......G | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 99.6 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AAATGTTCTTGCATGAGGCCATTCTCCTTTGGTATGGCTAGCCCCGCTTTCGTTATGCAGATGACCCGCCAGGCAGACCATTTTGATGTTGGCCCAAGTTTATCTATCATCGAAGGAATGGAACAGGGATTAAAGCAAGGAATACAGAAAGGAATAAGACGAGGGATGAAAAAAGGGCGTCAAAAAAATCGAGGAAGGGAGGCTCGACGTGGCGAAGAAAATGCTGGGGAAAGGGTACGATATCGACGCGATCCACGCACTGACCGGACTGCCGTTTAAAAAGATCGAACGGATGAAGGAACAAACCTTTCTCCGCAACCCTATATTCCCATTGTCGTCGACCCCCAATCGCGCAAAAACCCCTGGGGATCGACGACAATGTTCCTTTGCTTCAAAATCCTACAACCATCAAGTCCGAATATTATTGACAGAATATTTGAAACGTGATACCCTAGAAACAGCCGAAAGGGGAAAAGCTTGATTTAATGCGCATGGTTTGG # Right flank : GTTTTGTTGTACCCTTTGCAAAAGATTGATGATCGATTGCGACGCGGAATCTGTTGTCTATGACCGCATGGGCGTGGTGTCGCGTTTGCTTGACCCATTCATAGCGAATTCACTTGATGGAAAGGGGCAACGCTCGATCACGATGCGTGCCTCTTTTTTTCATCATTACTAGTGAAGAGCTTTTTCTGGTCGCTGTGCTTCCCCGTTTGGATTTCGAAACATCAAAACCAAAAAGACCCGCCCGCTTGTCTTGGCAAACGGACAGGCCTTTTCGTCGCGTTTTTCGTTTCCTCTTGCTCGACGCCTTGTCGATTACGCTCTTGCCATGCCGATCGAGGCGTCTGGCGTTTTGTAGGATGAAGCATCGTTGTTTTCGTCTTGATGGTTGTCGCTTGGCGTCGTCGAATGGTCGTCAGCCGATGGTTGTTCATTCGCTGGGTTTTCGTCTGTCGGCGCTGTTTCGTCACTCGGGATCAATTCTTTTTCTTTGCTCGTGGCGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 652-223 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAGF01000327.1 Geobacillus zalihae strain SURF-189 scaffold_326, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 651 30 100.0 37 .............................. TATCTCCCTTTTCTCTTTCTTGTAAAGCTAAATCAGC 584 30 100.0 37 .............................. ATACAAGAAGACCTAAGGTAGAATGACCAGAATGGAA 517 30 100.0 38 .............................. ATTTTTGATTCTAGTATTTCAGAGACGATGGAAGCAAT 449 30 100.0 36 .............................. ATTTCTTCGCCGCGTTCCCAAAGGATTCGATAATAT 383 30 100.0 37 .............................. TCAGGAGCCTCATTTTCATATCGGGGAACTGGATCAA 316 30 100.0 35 .............................. CGAAAAAAGGCAGTTCTCTGCCGTATAACAACAGC 251 29 86.7 0 ................CA......-..G.. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 98.1 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CGAGGTGAGCCAAATGGAAACGAAGGAAGCAAAGCGTGTGATGGAGCTCATCGTCTCATACGAACAGCGGGGGCTGGAAAAGGGAATCCAACAAGGAATRGAACAGGGGWTAAAGCAAGGGATGAAGCAAGGGCGCCAACAAGGGATCGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGATGGCGAAAGGGTACGATGCCGACACGATCCACGAACTGACCGGGATGCCGATGGAGAAGATTGAAAGGATGAAGGGGTAAGACGGCCCTTCGCCGTCAAGCTCCGCATTGTCGTCGACCTCCAATCGTGCAAAAACCCCTGGGGATCGACGACAATGTTCTTTTGCGCCAAAATCCTACAGCCAACACGGCTGAACGATATTGACAGAATATTTGAAACGTGATATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGCATTGTGTG # Right flank : CCTGTGCCGGTGTACCAAAATATTTGTGTTACCCGTGGTGCTAGTTGAGCGTTAGAACTCAACTAGCCCAAGTGTAACTAGGGAATAGGCTAACAATATGCCGTCGAGCGCTACTTCAAATCCGATCATGGAATTTGCTCGGATCCCTGTGATCCGGTATTGGTCAACCAGAACCGAGAACACCGTCTCGATCACTTTGCGTTTTTGTTGGATCCATTTCTCC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 16687-14604 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAGF01000033.1 Geobacillus zalihae strain SURF-189 scaffold_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 16686 30 100.0 35 .............................. CCAACCATATGGAGACGACCAACGGAACGGATTAG 16621 30 100.0 35 .............................. TTGGTAAATGTATGAAGTAACTCCACGCCATACAC 16556 30 100.0 37 .............................. GTCGCTTGATCTCGCCGCGTTCGACGGCCTCCAATTT 16489 30 100.0 36 .............................. CGGCGTCTGCTGTCGCGGTAGCAGCTTTAAAATCTT 16423 30 100.0 39 .............................. CAATAACATCACATTCATCAAAGGCAATGAGGAAGAAAT 16354 30 100.0 36 .............................. ATTTCTTGGACTGTTTCGCATTCGTGAATAGCTTTA 16288 30 100.0 36 .............................. AGAAAAGACCTAATGACTATACTGAAAAACATATCA 16222 30 100.0 36 .............................. TTGAGGTTGCATAAAGACACTTTTCCGCAGGTGTTC 16156 30 100.0 35 .............................. GAAGCATCAAAAAAGGTATTAGTTGGGGGCATGTG 16091 30 100.0 36 .............................. ATTTAGTTTCTATATCTAATTCTATAATCACTTTTA 16025 30 100.0 38 .............................. TCAAAAGCAATGGAAAAGAAATTAGAAAATGGAAAAGG 15957 30 100.0 37 .............................. GTTGCGCTTTCATTGCTTTTTACTTCTAATAAGATAG 15890 30 100.0 37 .............................. AAAAGAATCACGCCACAAGAAGCAAAGGAAAAACATT 15823 30 100.0 35 .............................. ACAATATCTACCGCTTTTTCCCAAACTAATTTTTC 15758 30 100.0 36 .............................. CTGTAAAGTATAGACAACCATTTTCTTCCCCAGTGA 15692 30 100.0 36 .............................. ATCCGTGCCAACTTAGCCGATATATCTCCGTTTGAG 15626 30 100.0 36 .............................. TCACCATCTTCCCGCGGTGGCAGGCAGGGTAAAACT 15560 30 100.0 34 .............................. TCTGCCGGATCATCGTAATTCAATTTTCCGGCAG 15496 30 100.0 38 .............................. AACAGGAGCGTGGCGTGCCGACCGGGATTGTGAAGCTC 15428 30 100.0 37 .............................. CCTGCTTCGCCACCGGGCCAAGCTGGAGAAATTCCGC 15361 30 100.0 35 .............................. CAACAAAGAGTCCGACGACGATACGCTTGAGATCA 15296 30 100.0 36 .............................. GAAATGCGCAGGATGTTTGGAATAAAGCGGATCAAG 15230 30 100.0 35 .............................. CGAAGATTACGACAGGCAAGCCGACAACGCTGGCC 15165 30 100.0 36 .............................. ACTAATTTTGGTTATAAGCATGAAACGCGGCCGATG 15099 30 100.0 36 .............................. TTGGACAGCTAAATTATGGAATGCTTATCGAATTTT 15033 30 100.0 36 .............................. CAAAGAAACCATGACTTTCAATGACTATATTTCTAT 14967 30 100.0 35 .............................. ACTAGTCTGACAAATAACATAAGCTCATCATGCTC 14902 30 100.0 36 .............................. CAAGAAACCAAAGCGCTCGCTCCGAAACGAACGGGT 14836 30 100.0 39 .............................. ACCTGATAATCGTTAGTTGACGGGTTCATCGCTGCCATC 14767 30 100.0 37 .............................. TCCATCCGATGAAGATGAATGTTGCGAAAGTTTTGGA 14700 30 100.0 37 .............................. GCAGAAAATGCCTTTTCCACTTCCGCCAACACTCTTT 14633 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ======================================= ================== 32 30 99.9 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AACGCGCCCGTCTTGAGCGCCGGAAAATCGAGCAGGAAATGGTGGAGCGGAAGAGACGCGAGGAAGAAGAACGAGCAAGGCTGGCCCTCCTCTCCCCCGAAGAACGGTTGGTGGCCGAAATTGAACGGTTGACTGACAGCGAAACGGATAGGCAGCGAAGCAAGGATAGCCTTTACCAACAGGTGATCGAGCAACAAAACAAACAAGCCGCCGTTGCGTTGCAGGCGTATTGGAAACGTATCGGAGAATGGGGAAAAGCCGTCAGCAAAAAGCAAAAGCAAAAAATGGACAAACTTCAACAACTGTTGGAGGAAAAGTGAGGGTCTTGCGATTGTCGTCGACCCCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTGCGCCAAAAATCCTACAGCCATCACGGCCGAACTGTATTGACAGAATTTTTGAAACGTGATATTCTGGAAACAACCCAAAGGGAAAAAGCTTGATTTGATGCGCATGGTTTGG # Right flank : TTATCCAACTCCCCGTCTTCCACACATATCTGAATCGCGTTTTCACCCACGCAATTTGGTGATCTTTTCTCCTCTTGTGCTGTCTTCGCTGGCAATGTGGAGATGACCCACCATCTTCCCTTGATCCTCGCCACGCGCAAAACTTCTTCTTCGTTCTGTTTTTCTCGCGGCAGCTTTGTTCGATGCGCTATACTTGGATAGAAGGAGCAACATTTGTTTGCTTCCGGATGGGCGTTTGTTTTTGCTTTTTCACGATGGGGGCAAGCAAAGGAAAGAAAGGGGAACGGTTATGCGCTGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAATCACCGATGTGCCCGGGGTAAGGGTGGGGCATGTGACGATTCGCGAGGACATCGATGAACGGACGGTGATCCGCACCGGGGTGACGGCGGTGCTGCCGCATGGGGGCAACTGGTTTTTGGAGAAAGTGCCTGCGGCTTGTTTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 26530-26100 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAGF01000033.1 Geobacillus zalihae strain SURF-189 scaffold_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 26529 30 100.0 35 .............................. TCTCGTTTTGTTTACTGTCATGATTTCTTCCATGA 26464 30 100.0 37 .............................. TGAACGCGAAGCGAAAAGCACAACAAGAGGAGCAAAC 26397 30 100.0 39 .............................. CTTGTACATATCTTGATTTTTCTCCCTCGATAACTTCGG 26328 30 100.0 37 .............................. CAATTAATTTATTTTCTTCTTTTACGCAAGGAAAAAC 26261 30 100.0 39 .............................. CCTTTTTCAATAAAATAGTCCAAGTTTTTCATTTTTTTC 26192 30 100.0 33 .............................. TTTTTGCTTGCGGCGGTCAAGCCAATCTATGAT 26129 30 76.7 0 ............T.C.CA...A.C....C. | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 96.7 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CCCGGGGGATCGACGACAATGGTTTTTGGTGGTTCAGACTTACAGCCATCGAGGTTGAAGGTTATTGACAGAATTTTTGAAATGTGGTATTCTGAAAACAGCGCTAGATCGAAATGCTTGATGCAACAAGCATTTTTGG # Right flank : CTCTTCATCTTCGCGCGCAGGTGTGATGGGGGGCTCGTTGTTGTCGCAGAGTTAGTTCAGACCACATCTCTCATTTGCTTCGTTTGCGGTGATGAAGCATTGTGCGTAACGGATGGGCGCCTGCGGAACAGGCAGTACAGCATTCTAAGTTGGGCAAAGGCATTTCTAGTCTCACGGGTTGCCTTTCTAAGTGACGGGAGAAAAAAATAAGATGGCAGCGATCTATGTTGGCGGCATCTTTCGATCGAGGGAATCCCTTCTGAGCAGGGGATTCTTTTTTTGTGTTTCGTCCTCCGACGTTGTTTTGCGTCGCTCCTTAAAAGGGGGAAGCAACGGAAAAACCAGCTGGAAGAGACGCTCTTTTACTTTCGAGGGCCCTTGTTATTTTCCATTCGCCTTCGTGAAGTTGGGTGGAAAATTCGTTTTTCACCCGTCTCTTCAGTGGGAAAATGTTTGAAATTGTTAAAAATATCCTCCTCTATAATTGAAAAATAGGATAT # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 13559-13326 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAGF01000058.1 Geobacillus zalihae strain SURF-189 scaffold_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 13558 36 100.0 30 .................................... TAACTTTTCGGAAGGAATGATACGCCGCGG 13492 36 100.0 30 .................................... GATCGTGGTGTATTCAATGGCCTTCATTGG 13426 36 100.0 29 .................................... CGATACCCTGCGCTATTTCTCCGTTTGAT 13361 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Left flank : AGAAACAGCCCTCCCAAGATCTGTTTAAGCTTAAAGGAGAGCTATTTCTTCCTTAAAGATTAACGAAGTCTTTTGGTTTCCTCTAAAATTCTTTTCAGTTCAGCTACTTTCATACGAAAAAACCTTATCTTTCCTAGAGTGATTATGTTTAATATTGAGTAGCAAATAAGGCTTAGGGAATACTCTTTATCCTCATTAATATCGTGAAAAAACTTCACTCAAACACTCCCTTGCTAAAATTTATTTTAAGTATAAGGCATACACTCCAATATACATTCTTTCTTTACATAGGATGCTACTGCTCTGCATGTTCTGTGCTTTTTAATCACCAACATACAAGCAAGATATTTTGAAATACTAAACGCCGGAACATTTTTGCATATTTGACTTGGATAAGTACCTTTTGGGCAAATAGCGCTTGCTCTAAAGATGATATTCTCCGCATTATTCTCATTATTTGTATTACTTTGTGTATCTAAAATAGCATCTATTTCGTTTTG # Right flank : ATTAAAGCAATGACATACTACCGATAAGCTATAGGAAGAACAGGTGTCTTCATTCCTCATAGGCACGATAAAAACACAAAACGACCCCGAAGTAGGAATGGGGCATCGTTTCAATCCCTCATAAGGTATGGTAAAAATCCAAAAAGCGTTGCCATATCAAGCTTTCTCCCGCAACCGCAACTTCAGCATAACGCGTCCCGAATATTCTGTCAACCAAGCCCATCCATGATGGCTTTAGAGATTAAGCGATCAAAACCAATGTCGTCGATCCCCCGGGGTTTTTGCACGATTGGGGGTCGACGACAATGTGAGATTCGACGGCCAAGGGCCGCTTACCCTTTCATCCTTTCAATCTTCTCAATCGGCAGTCCGGTCAGTTCGTGGATCGTGTCGACATCGTATCCTTTCATTCCTTGTTGGATTCCCTTTTCCAGCCCCCGCTGTTCGTATGAGACGATGAGCTCCATCACACGCTTTGCTTCCTTCGTTTCCATTTGGCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 6035-7205 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAGF01000009.1 Geobacillus zalihae strain SURF-189 scaffold_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 6035 30 100.0 38 .............................. CAGGCATAATATTAAAAACAACCAATGCAATTGGTTTA 6103 30 100.0 36 .............................. CTCGTCGAGTTGGCTAAAGCACTTTGAGAAGGAGGA 6169 30 100.0 37 .............................. TCAGATGTCATCAACGGGGCGCCTAACGTTCCGCATC 6236 30 100.0 38 .............................. AAATTATAAAAGTAAACGGCTCTGTCACGCATGAACTT 6304 30 100.0 38 .............................. TCATTTTCATCCGCCAAAAATAGGAGATATTGTCATTG 6372 30 100.0 37 .............................. CAAAATGGATTTGTTGGTCATTTAGGTGGTTTTGTAA 6439 30 100.0 37 .............................. AACGAGGGGAGAACCACCGACCATCACGACATCAACG 6506 30 100.0 38 .............................. AGACAATGTTCGAGCAACTTATCCAGTTCCGACTCTGA 6574 30 100.0 37 .............................. CTCCCACTTTGATATGGGCGTGAGCAAAACGCTTTTG 6641 30 100.0 37 .............................. AAATTGCGGTTGAATTTGCCGAACAATCAAGCCGAGC 6708 30 100.0 34 .............................. CCGAGAGTGTTGGCGGAGGCGCAGCGGGCGGCGC 6772 30 100.0 36 .............................. CCAAATGGATAGAAAAAGATTTGACAGCAGATAAAT 6838 30 100.0 39 .............................. TCCAAAACAACCCCAGCAGCGCCATCATCTGCATGAAGT 6907 30 100.0 40 .............................. ATGGTGTTGATGCATGTTTTGTAAATTTTAAGCTTCCCGG 6977 30 100.0 37 .............................. CCCGAGAAAGCCTTTTTGTGAGTGGAGTAATAGTTAC 7044 30 100.0 37 .............................. ATGTGAAGGAATCGGTCCATGAACGCTTTGTCCTGAT 7111 30 100.0 35 .............................. TACTCACTCGTACCGTTCCAATCGGACTGTTTCAG 7176 30 83.3 0 .C.........C..C..C..T......... | ========== ====== ====== ====== ============================== ======================================== ================== 18 30 99.1 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAACCCGGCGCTGTCCGACGACATCATCCGTGTCGCCCGCTCGCCGATCCGCAAACTTGGGCCGAACGACCGCCTCGTCGCGCCAGCCGTGCAATATTGCGCTTTATTCGGCAACGTCCCGCACGGCTTGGCTAAAGGAATCGCCGCCCTCCTGCGGTTCGATGACGACCGCGACGTGGAAGCCGCCGCCCTTCAACAAACAATCGCCCAACATGGAATCGAAGGCGCGCTTCGGCAATACGCGGGGCTTGAAAGTGGGCACCCGCTCGTGGCGGCGGTGAGGGAAGAGTACGGGAGAATGGAGAAAAACAAAAGCTGACCGCCTTTCAAATGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCAGCAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCTCAGAGAGAAAAAGCTTGATTTGATGCGTATGGTTTGGG # Right flank : CACTGTGTAGTACGGCACAACTTTTTCTGTCTCCCATGCAGGATTTTCACCCCCTGCTTGCGAATGGATAGAATCGAACACGTTCAAAGAGGGGTGATCGAATGGCCATTGACCATGACCGATTGTTCAAAGAGCTGATTCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTCCCCGACATGCACGAACACATTGATTTCCGCCATTTGTCCTTCCTGTCCGAAGAACTGTTTACCGATGTCACCGCAGGTGAAAAATACCGCGTCGATCTATTGGTCGAGACGAAACTGAAAGGAGAAGATGGGCTGATCATCGTTCATGTGGAGAATCAAAGCTATGTGCAACCATCGTTTCCAGAGCGCATGTTTGTCTATTTCAGCCGTCTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCTATGAGGCCCTTCGCGAGGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 15197-15690 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAGF01000009.1 Geobacillus zalihae strain SURF-189 scaffold_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 15197 30 100.0 35 .............................. CTGTAAGACTCGGGAGCACCGCCGAGTCTTTGCGA 15262 30 100.0 38 .............................. TCTTTATCACAGACCATCCAGTTTACGATTTCTTTTAC 15330 30 100.0 36 .............................. TTGCGTTTTTAATAGTTCTAATCTCTTCCTCGACAT 15396 30 100.0 36 .............................. GCTACAACCGCCATATCGAGTTCCGTTGCTACCGTT 15462 30 100.0 38 .............................. AGAAAGCAAGTAAAGCGGCTTGCCGTTGTAATTCCTCC 15530 30 100.0 36 .............................. AATTGCGTAGAATGGCTCGCCAGTTTGTTTTGCTTT 15596 30 100.0 35 .............................. AATCAAACCGAAGAAGATTTTGAACTGATTATTGT 15661 30 96.7 0 ............................C. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 99.6 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGGGAGCGCAAATCGCCTACGCCCGTTTTACTGCCTTGCCGCCGCTTGTGTATGTGAGTGTGTTCGGGCGCTTGATTTTGTCGCCGCTGTTGGCTGCGTCTTTGATCTTTCTATTAGGAATGGATGGAGTGACGGCTCAGGCATTGCTCATTGCCAGTTCCTATCCGTGCTCGCGCAATACGGCGCTGTATGCACTCGAGTATGACTGCCACCCAGATTATGCCGCCCAGGCGGTGTTGGTGTCGACCTTGTTGAGCGCCATTACCGTGACAGGCGCAGTATATGCGGCCCGGCTGCTGTTTCCGATTAGCGGATGAAAACGGGGCAAGCTGTCGTCGATCCCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTCTTTTCGCGTCAAAATCCTACAACCAACACGGCTGAACAGTATTGACAGAATTTTTGAAACGTGTTATTCTGAAAACAGCCAAAAGGGAAAAAGCTTGATTTTACGCACATGGTTTGGGG # Right flank : CTATCTCCCTGCCACAGCTGAACCACTGCTGAGTTCAGCTTGTTTTACCGCTCGACATAGAAGACCGGTGAAAAACGGTGGCTTTCGCGTAATCAGCGTTTTGGGGCGCGAGAGAAGGCCTAGTTTTAAAAGACTTATCCACTTGAGAAAATAGTGTTTTTCGCGGTTTTTTCACTACATCACCACCCTTATAGGAAAAGGACGAATGCGAAATGGCGCATGCCAAAAAACGTGGGAGGGATAAGGAGGAGTTCGGCCGCGAAGGGCGAATACAGTACGGTGAATCCGACATTGCCGGGAGGGAAAACGTGGCTAGGAAGCGAATCGATCATGACCGGTTGTTCAAAGAGCTGCTGTCGACATTTTTTGAGGAGTTTTTGCTCCTTTTCTTTCCCGATGTGTACGAGTACATTGACGTTCACCATCTCTCTTTCCTCTCCGAGGAACTGTTCACCGATGTGACGGCCGGAGAGAAGCACCGCGTCGACTTGTTGGTCGAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //