Array 1 621485-623767 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQHH01000021.1 Pseudoalteromonas prydzensis ACAM 620 chromosome II, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================= ================== 621485 28 100.0 32 ............................ GTATCAATCTCTGATTTAGGTATGTAATCACC 621545 28 100.0 32 ............................ TAAAAAATGCAAAGTATGCTCGATTGATTTCG 621605 28 100.0 32 ............................ ATCACTACCAGACATGTTGCTAGTGCCGTTTT 621665 28 100.0 32 ............................ GCTATATAAAACTCAACAAACCCATCACTACC 621725 28 100.0 32 ............................ TTGCATGTGATGTCCGCCGACGTCTGAAATAA 621785 28 100.0 32 ............................ ACTATCACCTTTGTAAGTCAAACCATCAATAT 621845 28 100.0 32 ............................ TAGAGCTCCGCCTGTGCCTATTGATGCTAACC 621905 28 100.0 32 ............................ GTTTTAAAATGACCACAACAGAAATCCATATT 621965 28 100.0 32 ............................ TAATAAGCATTAAAGTTAGTGTGAATTTAATT 622025 28 100.0 32 ............................ TTTCTGGCAGCCGCTAACGATTCTTGAATTGA 622085 28 100.0 32 ............................ TGTGTGGCTCTTTCTAGCTGGGCGCGTTGTTT 622145 28 100.0 32 ............................ TGCAAGAGGCCCGTTACCGTGTCTCAGAGTTA 622205 28 100.0 32 ............................ TTCACTTCCAAGGGTGTTAGGGTTGGCGCTAG 622265 28 100.0 32 ............................ TTTCGGGTCATAGAACGCTTGAAAAGTAACGA 622325 28 100.0 32 ............................ TTCGGGTGGCTCTTCACCAATTTTGCTTATAA 622385 28 100.0 32 ............................ TGCAAGAGGCCCGTTACCATGTCTCACAGTTA 622445 28 100.0 32 ............................ AATCAATGGGCATGATTCGCCTGCAAGAGGCC 622505 28 100.0 32 ............................ TGACACTTGGTTGATAAATTGAATCTGAATAT 622565 28 100.0 33 ............................ GTAAACTCTTTTTGCTTTGTATTTTTGATAGCT 622626 28 100.0 32 ............................ TCATCAGTACAGAGAGCGCCTCCTGTAGCAAT 622686 28 100.0 32 ............................ TATGTGCAGGCATTTTATTTCTTTCAATTAAA 622746 28 100.0 32 ............................ ATCACAATCAACAATTCTGATAAAGTTATCCA 622806 28 100.0 32 ............................ ATTGACGTGTTTGAACTTACCATACGGTAATT 622866 28 100.0 32 ............................ ACTATCACCTTTGTAAGTCAAACCATCAATAT 622926 28 100.0 32 ............................ ACTATCACCTTTGTAAGTCAAACCATCAATAT 622986 28 100.0 32 ............................ ACTATCACCTTTGTAAGTCAAACCATCAATAT 623046 28 100.0 32 ............................ ATGCCATTCAAGCCAAAAAACAACTTGTTTAA 623106 28 100.0 32 ............................ TCTAGGGGGTGGTACGTTCAGCACCCTTGATT 623166 28 100.0 32 ............................ ATTTGTATCAAAGTTAAACTGAGTTTTTAGCG 623226 28 89.3 109 .........................GTG ACGAGGGACCGAAACGGAGTTTCGCAGCCTGAGGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTGTTAACACCGTGGTTTGTTTGAAATTCA 623363 28 89.3 109 .........................GTG ACGAGGGACCGAAACGGAGTTTCGCAGCCTGAGGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTGTTAACACCGTGGTTTGTTTGAAATTCA 623500 28 100.0 32 ............................ TTTATCAAATGTCACTTTTATAGAACAATCAT 623560 28 100.0 32 ............................ ATTGCATTAATAGCGTTATTGAAATGCTGTGT 623620 28 100.0 32 ............................ ATTGACGTGTTTGAACTTACCATACGGTAATT 623680 28 100.0 32 ............................ GCAAACTTATCATTGTTTGCAGCGCGGCGGGC 623740 28 85.7 0 ...............T.........GTG | ========== ====== ====== ====== ============================ ============================================================================================================= ================== 36 28 99.0 36 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGTTTAAATAAACTTCTACAAACTAACTGGTTAAAAGGGTTGCGGGATTATTGTGAAGTGAGCTCGATTTTACCTATACCAAGTAATGTGCAGTTTTGCATAGTGAGTAGAGTGCAGGCAAAAAGTGTATTCAACAAAAGAAAGCGCTCGGTAGCGAAAGGCTGGCTCACTGAGGACGAAGCAGCGGTTAAAGTCGGTGATACTCAGCAAAAAAGACTAAAGTTACCTTTTTTGCTGATAAATAGTTCATCGACACAGCAAAATAATGTAAAGCTTTTTATTAATCACGGAGAATTACAGCAAACACCAATATCTGGTGAGTTTAATTCATATGGATTAAGCAAAACCGCTACCGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATTTGATATAAAAACAATGAGTTATAATAGGTCGTTTTTTATAAGGTAAAATAGCAATATTTAACCTAACGGCTTGTTGTAACTTATTATTATGCTGGTATTCTATA # Right flank : GACGAGGGACCGAAACGGAGTTTCGCAGCCTGAGGAAGTGAGGTCATGGCAGATTTTTGTTCCCGACAAAATCTAAGTACCTAAATCCATTTAGGCAATGACCGATGTAACCAAGCTCCATGGATGGATTCAAACGCCGATGTTTTTTTTCGCGCCAGCAAGCTTAGCGCCTACGACACAGGCAGCTTAGGTGGCGAGGCAGTGAAACGAGTTTTTTGATCACTATTCGGCGCTAAAGCGCTCTTCTACAAGCCACACTACGGATGCTTACGGCGACGATATGCTTAACGTGCTAAGCACGAGCTACAAATTATTTCATGGTTTCTCATTTACCCTCATAGTCTGCTCTTTGTGCAAAAAATAGTTAAGTTCTAGGAAAATGACTAGGAGATCTGCATATTAGGAAACCTAATGAGCTGTTTTTAGCGAGTTTGGGTGATTTCTGATTGCTATTTATATTACATTTTGAGATATTATTTATAATATAATATTAACAGGAT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 234331-234539 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQHH01000014.1 Pseudoalteromonas prydzensis ACAM 620 contig014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 234331 29 100.0 31 ............................. AAAACGTTCTTTGCTCTGACTTGCTGCGTGC 234391 29 100.0 31 ............................. TTCTGGGAATTGGGCTTGATCAGTCATGGTT 234451 29 100.0 31 ............................. TCTATTATCAAAAAAACTAGAACCACAGAAA 234511 29 89.7 0 C..A......................G.. | ========== ====== ====== ====== ============================= =============================== ================== 4 29 97.4 31 AGTGACCTGCCGTATAGGCAGCTGAAAAT # Left flank : TTGTGGCTTTTTTAAAATAAGCCAAATTTTAGCCGTTCCTGACAGCTGCCAAGAAATACGTTTTATACGTAATCAGGCGGTAGCAAAAATATTTACAGGTGAAAGTAGAAGAAGATTAAAGCGTCTGCAAAAAAGAGCCTTAGCAAGAGGTGAAGACTTTAACCCTAAAAAGCTCGCAGCCCCACGTGAGGTTGATATTTTTCATAGGGTAGCCATGACTAGCAAGAGCTCACAAGAGGATTATATTCTTCATATTCAAAAGCAAAATGCCGACTGCCAAGCAGAGCCAGTCTTTAGTAATTATGGTTTTTCATCAAATGAAAAGTTTAAAGGCACGGTTCCTGATTTATCACCGTTTATAGAAAGCAATTAACCTTTATTTTTGTCACAATTATAAGTTATTGATATTAATGCGATATAAGCAAGCATTTTAAAAATGGGTAAAATTGAATTTGCTTTTTAATTATATGAATTATATAGATAAATTTAGCTATTTTGAT # Right flank : TAAAAACAATCGATTCGATGTTTAAGTTAATGTAATTCTGCCGAAAAGGCAGTGAGTAGTAATTGAAAAAAACAGTCTTATATTTAAAGGCTGGTTTTATATTTTTATTTAATAAGTAGATTTATATTTAAGGTTATTCACTCTGTTTTTAGAGAGTATTAAGTTTCCTAATTAATAACGGTAGGCTAACATCCTGTGAATAAGTAAAACATATTTGCTAGAAGTACAAATCAGTGGCCAAAATTAGTCGACCGCTAAACTACAAATTTATGATTAGCGCTAGGTTTAATATCGCTAGTTATACACATCTCTAAGCTTGCTAAAGTTATATTTAATATGGCACCTCAAGTAATTGGCTGATAGTCGGTTTAGAGAGAAAAACCGGTCATTGAAAAGTTAAACTTATTCCTGCTTTGATGAATAAGATTCTAGTTTCGTTCAATAACATTTTTAACCGCCGTTTTGGTGAAAAATAACCCTGTTAAATTTTATCTATTTTA # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGACCTGCCGTATAGGCAGCTGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.20,-8.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //