Array 1 2379-3140 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAITR010000042.1 Fusicatenibacter saccharivorans strain MSK.13.41 NODE_42_length_9553_cov_280.224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2379 36 100.0 30 .................................... TGATAGATTGCCATACCTAATACCTCCATG 2445 36 100.0 30 .................................... AGGTTCTAATATTATTCCACTTGCAGGAAA 2511 36 100.0 30 .................................... TGAGGACGATTTCTATTCTGCAGGCATGAA 2577 36 100.0 30 .................................... ACCCTGTCCAGAAAAGCCTTCATCGACGAT 2643 36 100.0 30 .................................... ATCAGGAACAAACGTGAAAGTCGAAAACCA 2709 36 100.0 30 .................................... TACTGTATATGGTGCGAATGATGGTTTTAA 2775 36 100.0 30 .................................... CTGAAAACGTCATATGACGGCGTAAAAGAC 2841 36 100.0 30 .................................... ACGATTTGAGCGCGTAAATGACAGCTTCTA 2907 36 100.0 29 .................................... CGCTCGCTGCTCACTATCCATCACCGCCT 2972 36 100.0 30 .................................... TTTCCACCTCCCCTAAATCTGTAAGTAATG 3038 36 97.2 30 .........................A.......... ATTTTCAGGGCAAATTCTGCTAAATCGTAC 3104 35 80.6 0 ...............-.....T...TT.TG.G.... | AC [3137] ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.1 30 GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Left flank : AAAAACGGTTATTTACAGAGCTGGTCAAAAGTGCGCAAAATGAAGAAATGTTTCTGGAAACGCAGAGAATTATTGCGGAACTGAAGAAATACATCTATCAATTGGAAGCTGTCAGTGGGTACGAATTGGAACAAAATGAGGAAATCGATTTGAGCGCACTCCTAAAATTGATGGGAGTTCAGACAGAAACCGAAAAAGAGATGGGGCTTCTGGAAAAATTAACGCAATATATCAAAGTTATGGCCGAACTTCTCCAAAAAGAACTGGTGATTTTGGTCAATATTCGATCCTATCTGAACGAAACACAAATAAACAAACTCTCCCAAATGGCATGCTACTATGAAATATCCTTGCTTTTCATAGAAAATATACAAAGGGACTTTTCGAATCAGAGAGAATATTATATAATTGACAAAGATGGATGTGATGTCTATTAATATCCATCGGATGTTTGAGTACCTGTTTTGTGCAGATGAAAGCAGTTCATTTTTAAATTTGAG # Right flank : CAAGAATAGATAATTCAAAATGAAATATTCAGAAGACAGTATGAAATCGACTTAATTGTCTTTTTCTTGCTGTCTTTTTCCTTGTCTCAAAGCGCCGCACCATGTATAATAAAACCACAAGAATTTCATTTCATAGTTTTTACAGGAGGAACCTGAATCATGATCCTTGCAATAGACATCGGCAACACGAACATCGTCCTTGGGTGTGTGGAAGGGAAAAAAACATACTTTATCGAAAGACTCTCCACGGACAAGGCAAAAACAGAGCTGGAATACGCAGTCAGCCTGAAAAATGTACTGGAACTGTATGAGATTCCGGTGGAGCAGATCGAAGGAGGTATCATCTCTTCCGTTGTTCCGCAGGTGACAGAGCTCTGCCGGAGTGCGGCAGAAAAAGTGATTAAAAAGCCGGTCAAAGTTGTCGGCCCCGGTGTGAAGACCGGACTTAATATCAAACTGGACGACCCCGCAACGGCAGGAAGCGATCTTGTTGTTGTAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 1027-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAITR010000008.1 Fusicatenibacter saccharivorans strain MSK.13.41 NODE_8_length_146095_cov_321.73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1026 32 100.0 35 ................................ ACCTCGGACAATCCGCGGGATGAGGAACCACAGGC 959 32 100.0 33 ................................ TTTTGCAATGTTGTTGAGAAGCCAAGCAACGTC 894 32 100.0 34 ................................ ATATGATGTACCACATAAATATTCGAAAGATCTC 828 32 100.0 35 ................................ AGCAAAGGAGAGACACCAGTCATTGCAATCAGCGC 761 32 100.0 35 ................................ AAAGAAACAGAGACAGAGCAGCAGTACAGAAGAGG 694 32 100.0 33 ................................ CGTCCATCTGAAGACACTCGATTGCAAGATCAC 629 32 100.0 33 ................................ GATCACGTTGGAGGCGAACAGAGGATGATTACC 564 32 100.0 36 ................................ ATACGAGGCAACGAGCCGCGATATGTCCGAGACAAA 496 32 100.0 35 ................................ CGTATGAAATCAGCATCGTGAGCGTTCCGGCAGAC 429 32 100.0 35 ................................ TGGAAATATCGGGCGGTCAGATCGAGAGCAGACCA 362 32 100.0 34 ................................ AGACCTATTTCGAGAAGGTCGATGACCCGATGAA 296 32 100.0 35 ................................ ATTTGCATCCATAAGCGAACGCTGCAGGCGATCGT 229 32 100.0 34 ................................ AAAAAATGTATCTTATGCAAATGCTCTACTTTCC 163 32 100.0 34 ................................ CTATTCGTGTTGAGTGTTGGATGGACGAGTTTGG 97 32 100.0 33 ................................ TTTTGCAATGTTGTTGAGAAGCCAAGCAACGTC 32 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 100.0 34 GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Left flank : AGCTATCCTGTATTTTTGTGGAAGTGAGGTGGGAGGATGCTGGTATTGATCACATATGATGTCAATACGGAAACTGATGCGGGGAAAAAACGTTTACGTAAAGTCGCCAAACAATGTACCAACTACGGAAGACGGGTGCAAAATTCTGTATTCGAATGTATATTGGATAATGCACAGTGTATTGTATTAAAATCTATTTTAGCAGACATTATCGATGAAGAAAAAGACAGTCTTCGGTTTTATTATCTGGGAAACAATTATAAAACTAAAGTTGAACATATCGGTGTAGAACGTGGTACAGCTATAGATCAGGTGTTGATTTTTTAGGTGCGAATCGGTAGTACACAGAAAAAGCCCGGGAGATTCGCACCTGAAAAAGTGCACAAAAGGTGCTGGAATTGAGAAGATGGGGAAGAAAAGAATGGAAAGGGAAGGAGGAGAAAGATGAAGCGTTGTGAGAAATGGTTAAAAACATAGGGTGAATTTTAGATAAAATTGAA # Right flank : T # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 245964-244597 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAITR010000003.1 Fusicatenibacter saccharivorans strain MSK.13.41 NODE_3_length_245986_cov_299.124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================================================================================== ================== 245963 32 100.0 35 ................................ TTTATGCTCGCACCCCTACGGGGCAAGGGGTTGAC 245896 32 100.0 35 ................................ AACTGCCCGCTTTTGCTATGCGAAATAAGCTTCTA 245829 32 100.0 34 ................................ GCGCTGCAATATAGCACGCTTCTGCGCCTGCATC 245763 32 100.0 36 ................................ AAAGATGCGGCCGGAATGCTGCGTAAGGTTCCGAAC 245695 32 100.0 34 ................................ CACATGATCGAGAGAACCGAAAAAGGGATCTACA 245629 32 100.0 33 ................................ ACACGTTTTCCGGACACCTGGTTTGTGGCAAGT 245564 32 100.0 35 ................................ ACGGGTACGGTCAAAAGCGTAACGTCCGAGGGGCC 245497 32 100.0 35 ................................ TCCGAGTATTAAGGAGGGCGAGCAGATGGCAAAAC 245430 32 100.0 35 ................................ TTACAAACCTCGCGAAACCGACCGACGCGGTCGCA 245363 32 100.0 33 ................................ TTTTTTTCCGCACGTCAGTCTCAGCTCTGGCAT 245298 32 100.0 36 ................................ ACCTACAACAACGAGAACGTGCCGGAAACGATGGAG 245230 32 100.0 36 ................................ CCATTGCCAAGAGTTGTGCCCATGGCTGCCATACTG 245162 32 100.0 33 ................................ GATGATATCCTTGCCGGCGCGGACTTCTCTTTC 245097 32 100.0 35 ................................ GTTACCACATAGAATGGAGTCTGATCCAGAAAAAG 245030 32 100.0 35 ................................ CATATCTGGAATGATGACAAGAGCTATGATAAAAC 244963 32 100.0 38 ................................ AATGTTAAATTTCCAATAAGTTATTACCGATGTACCAT 244893 32 100.0 35 ................................ TTGTTTTTTCCGGCATCATTCCGACAATAGAGACT 244826 32 100.0 35 ................................ CAAAATACAGTAGGTGTCATAAACTCGTTAGGACG 244759 32 71.9 99 .........T.TAG....A.AAA.G....... ACGCCATACGGTAGCACAATATCAGATACGATCGCTGCTATCTTAGCAGAAGAAAGAATGGAAATTTGACGCGAGTCATCGGAAAAGAAAAAGGAAATG 244628 32 78.1 0 ...A...A.....T......A..AG..A.... | ========== ====== ====== ====== ================================ =================================================================================================== ================== 20 32 97.5 38 GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Left flank : TTGTTGAGAAGCCAAGCAACGT # Right flank : AAGGAGGTGCGCGAGGATACTGCCCTACGATTGCAAAGTGTTCTCTAAGGAGTGAAATGTGTTTGACACGAAAGGCAAACAATGTTAATCTATAACTAGCGTAAGTGATAACTAACCGCTCATGTATTCGCCAAGAACCATGGGCGGCTATTTTTCTATTTATTATTCGATAAGAAAGGAGGAAAATGATGAGAAATCCACTGACAATTTTTTGGATTATACTCGGTTTTCTGTGCCTGGGATTTGGCACCATCGGCATTGTGCTTCCGATCCTGCCGACAGTTCCATTCTATATGGCGACCCTGTTCTGCTTTGCGAAAAGTTCGGAACGGCTGCACAGCTGGTTTATTGGAACTCAGTTATATAAGAAGCATCTCGACAGCTTCGTACAGCATCGGGCGATGACGGTAGGAACGAAATGTAAAATTATCGGGATGGTAACGGTTGTGATGGCGATCGGCTTTTTTGCTATGAAGAATGTGCCGATTGGAAGAATCTGT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //