Array 1 15655-13659 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZMU01000019.1 Helicobacter cetorum isolate 138563_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================== ================== 15654 37 100.0 41 ..................................... GTCGTTCTAGTCTTAATTCTTTTTTTATAAGCTCGCTATTG 15576 37 100.0 39 ..................................... ATCAAGTAAAGGTTTATTCAACGATATAGAAGAGGATAA 15500 37 100.0 42 ..................................... TTTCATTAATATCTTCACCATCTATTAATACTTTAGTATGAA 15421 37 97.3 40 .......G............................. TTCTTGTCGACGCTAAATTCATTTATAGCCCTTCTATAAT 15344 37 100.0 40 ..................................... TTCTTGTCGACGCTAAATTCATTTATAGCCCTTCTATAAT 15267 37 100.0 43 ..................................... AGTAAGATAGTCTGAATTTTGAGAGATGAATTTTCTGAAATTT 15187 37 100.0 38 ..................................... TAGCAGTCTCATTATCCAATTTTAATGGAGATTGGAGA 15112 37 100.0 39 ..................................... GGGTATTTTGAGTTGGTTTACTAGCAACAAAAATGGTAG 15036 37 100.0 46 ..................................... GAAAAAACGCCTTATTACAAATCAGTTTTTAAATATTCGCCCGAAT 14953 37 100.0 38 ..................................... CTAAAAACCATGATAGAGAATCGCCCTGATTGGTGCTT 14878 37 100.0 37 ..................................... ACAGGTTCGAGATTCCATAAAGCAATTCTTTTTTGAT 14804 37 100.0 39 ..................................... TTGAATAACTTCCTTTACTTGAATGCCCTTTTTTACGCC 14728 37 100.0 43 ..................................... TTAAAAGAGCATGTGATTGATAAAGCGGATAAAGCCCTAGCCT 14648 37 100.0 44 ..................................... CTACCTTATTTAGTAATTCGTTTGAATGAAGACCAAAAGCGTTA 14567 37 100.0 41 ..................................... AATCTAACGATTAAATGAATAGTCTGCTCTTCGTTTCTAGG 14489 37 100.0 41 ..................................... ATAATAATTGATCAAACTTTAAGAATGGATGCCGGTCATAT 14411 37 100.0 40 ..................................... CATATAAATGAGAAATAGCTTTAATGCATCCTAAAGTATA 14334 37 100.0 43 ..................................... GCAAGGTTGCATTTTTCGGTTACCGATATTTTGAGAATGAAAG 14254 37 100.0 39 ..................................... TCCACATCCTGTGTTTTTCTTTTTAATTAATGAATCAGT 14178 37 100.0 47 ..................................... CTAATAAAGCGTATTTTAAATTTTCACCGCTCATCTTATCTCCTTTC 14094 37 100.0 40 ..................................... GATGATAGTTTTACTACAACAGGTGGTAATCAGTTTAGAT 14017 37 100.0 53 ..................................... TTATTAGAAGCATTTGCTTCAGCCTCTTTTCTTGCTTTTAATCTTGCTTCAAT 13927 37 100.0 42 ..................................... TAATTTCATACAACCACACTCCTTTTCTATGCTTATATATAT 13848 37 100.0 40 ..................................... TTTTATTAGCGATATTTTCCATATCTTTCTCCTTGAAATA 13771 37 100.0 39 ..................................... TTAATCCGATCTCTATTAGCAATAAAATAGTTTAATTCT 13695 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================================== ================== 26 37 99.9 41 ATTTATTACAGATTGACCCGTTCAAGGGGATTGAAAC # Left flank : GCTTTGAGATTGGCGAAAAACGAGGTATTTTTAAACCCTATGATGATTTCATTTAAACACTTAATGATTGCCGAAATGATTTGCAAAATGACAAAGGGTTTTTGCGAACTTTTTAAGCTTTATTTGCAAGCTTGTGGTGTAAAATAAGAGCATTTTAACCTAAAGTATTATATTTTATGATTTAGAATGATAGGCTTTTGCGAACTTTTAGTTTTAATTAAGTTTTAAAAGGCGCTCTTTAGGGGTTTATGAACTTTAAAAAAGGCTTAAATTTCTCAAATCATTGCAAAATAAGCTTTTTAATGCCTTTAAGTTTCGTATTAAGAGGCTTAAAACTTTCGTATTTTAGGGGGTCTTTGAAAGTTTGTTGTTGATTAATTAGCAAAACTTTTATCTTAAATAGGGGGATTTGCGAACTTTTTCTAAAAAGCTCGTATTTTAGGAGGATTTAAGGGATTTTTGAATAGAATCAAAAGTCTTTAAACTCTGTGATAAAGGCT # Right flank : ATGAAATATTTAAGCAATTTTTAAGGAAAATTACATTTTAATCACGGCTAAAGATTTTTTTGTGTTGATGAGGCTAGTATTTATTCATTGGTATAATCAACTATGCATAATGTTAAATAAAGCCTTACTTATAGTTAGTTTGGTTGTTAAATCAACTAGATAAAAATGATTATAGAATATTGTAATATAGTAGGAGTTGTATGACTTCTATTTACTAATTTTATCTTTTATTGTTAAGGAGATCCTATGGGAATTTCGGGAAGATTTGGTTAGTAGTTCTATTATTGAACTTATTTGGAAATAGTTTAGTGGCTGATGACTTCAGTGTTGATGTGAATACTAATACTATTGTTTTAGAGATTATAAAAGATTTTCATGAAGATGGTCTTTATGATAAAATCGCTAATAAGTTACTTAGTAGGTTGGCATTAAATATTGATGAATATGAGAGCACTTTGGATTTCAATATCTATAGCAAGGGGAAAGTTAATGTTGACTTT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATTACAGATTGACCCGTTCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : NA //