Array 1 14165-15405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPXK010000024.1 Faecalibacterium prausnitzii strain DFI.5.40 KFMDPPGG_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 14165 33 100.0 34 ................................. AACCGCGCCGTCATCGGTGGCGGTCATGCCCTGC 14232 33 100.0 35 ................................. CTGTACACCGCGCCCCTCAAGGGAAGAACAGGAAA 14300 33 100.0 34 ................................. GCTTGCTGTGGCTTTACTCTAGCACGTACACGTG 14367 33 100.0 35 ................................. TTCCCCGGCTTTGGTGTTGTGTTCCGGCCACTCGG 14435 33 100.0 34 ................................. TACAAATTGGCCGAAAGGGGCTTGACTTTGTAAC 14502 33 100.0 33 ................................. GGCTTACTCGCAACCGTCCGGCTGTTGTCCGGC 14568 33 100.0 34 ................................. TCAAAGTACCAGCACATGGAAGAGTCCTGACTGC 14635 33 100.0 34 ................................. TACGCCAAGAAGTACTACGAGGATATGTCCATGG 14702 33 100.0 34 ................................. TTTTCCGCTTTAGCGTGAGGGGTGATTTTGATAC 14769 33 100.0 33 ................................. AAAAGAAAAACAGCCCGACTCTCAAAATGAGAA 14835 33 100.0 35 ................................. ATTATGGCAAGACTCAAAAAAAGAAAAGATGGCCG 14903 33 100.0 34 ................................. CTGCAGGGCGGGGTTTACGGCCACCGCCGAGGTG 14970 33 100.0 34 ................................. TTAACAGTAGCCTTGTAGCCCAGCCGGATACCGC 15037 33 100.0 34 ................................. CAAATGCTTGAGCAGCACATACTCTATGTAGTTT 15104 33 100.0 34 ................................. ATTGCAAGACAACCTAATGGTCTGCTGTGCCGGT 15171 33 100.0 35 ................................. CGATACCATCCGCGCCGAACTCAACGCCCGCCACG 15239 33 100.0 34 ................................. TACCGTTGCATATACCAGACCGACACAAGCAGCT 15306 33 100.0 34 ................................. AATGCGTAAATGTCCTGCCATCCGGCATAGATGC 15373 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 19 33 100.0 34 GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Left flank : CATTTTTCTGGAAGTGAGGGATGTGTATGCTGGTCCTTATCACCTACGACGTCAACACCGAAACTCCTGCCGGGCGCAAACGTCTGCGCAAAGTCGCCAAGCGCTGTGTGGACCACGGCCAGCGGGTGCAGAACTCCGTGTTCGAGTGTCTGCTGGATGCCGCGCAGTATGCCGTTCTCAAGGCGGAGCTGACGGCCCTCATCGACCCCGCGCTGGACAGCCTGCGCTTCTACCAGCTGGGCAACAACTATAAGAGCAAGGTGGAGCATATCGGCGTTCATCCGCCCTTCGAGCAGGACGGCCTGCTGTTGTTCTGAGTTTTGCGCCCCGGTGCGAAGGGCGAGTTCTCAGCATTTTTCCGGCACCTTCGCACCGGATTTTTGTGTCATTTTGCATGATTAGGATAGCTCTTTGACCCGTTGTAAATCAAGGCTCTTCTAAATTCGTGCAGAATGTTGTATAATTTGTTTGAAAATAGAGATTTTGTCTCTGTTTTTGCT # Right flank : CCAAATGCCCGGACGGTGAGCGCATTTTCAAACAGGTCGCCCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCTCCACACGGAGGGCGTGGATAGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 45-1330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPXK010000022.1 Faecalibacterium prausnitzii strain DFI.5.40 KFMDPPGG_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================================================================================================================================================================================================== ================== 45 33 100.0 34 ................................. TTGTACGGCTGCACGCGGATCACGTCAAGTTTTG 112 33 100.0 36 ................................. TCTCCCTGTCATTGCCGCCGCCAGACTAGAGCAGTT 181 33 100.0 34 ................................. TGCACTATCTGGATACGAACGGCCAGAAGTACAA 248 33 100.0 35 ................................. CCGGCGAGGAAGCTCCGCGCCCGGCAGCACCGCGC 316 33 100.0 35 ................................. CCATTCGGCCCGGTCGCGGATCAAGATTGTACAAG 384 33 100.0 33 ................................. CCGGCTACGGCAGCTATGGTGACTGCGCCGGAC 450 33 100.0 35 ................................. AGGTTTATGTGGAACGGTATGCTGCAAGGCAAGAG 518 33 100.0 33 ................................. AGATTCCCGCTGTTGAGGTATCGGCATGAACGG 584 33 100.0 34 ................................. CATCATGGCTAAGGTATACGCTGATCTGATCCGC 651 33 100.0 34 ................................. TCCTTTACAGTCGGATGCCGCCACGCGACGGCTT 718 33 100.0 34 ................................. TCGTCCCACACCATCCCAGCGTGAGATTCATCCC 785 33 100.0 35 ................................. TCCTGCCGGGGGAACTCTCCGGCGACACGAACACG 853 33 100.0 35 ................................. GGCAAGAAGTTTGGCTTCGCACTGGATGTTCTCAC 921 33 97.0 34 ......T.......................... ACCGCATAACCCCACTGGAAAACGCCATCACGCA 988 33 90.9 211 ......................CA.G....... CGACACAAAAATATGGTAAACTCTTATTAAGTTGTTGCCATGCGCTCTCTAAGGAACTGAGTATTTTGACCTACAATTCCGTCTCTTAAAGACGTTGGTTGAAATCAGTTTGTGTTCCCCGGTGCATTCTTCGACTTGAAGTCGCTCCTATTTGAGGGGTGTGGATAGAATAACATAATAATCATATCGCGGTTCTCAAAGGCGTAACCAA 1232 33 81.8 33 .A..T....T..A.C........A......... TGTCACAACCACGCCGATCTTTTCAGCATCAAG 1298 33 78.8 0 ..T.......C...AA....TAC.......... | ========== ====== ====== ====== ================================= =================================================================================================================================================================================================================== ================== 17 33 97.0 45 GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Left flank : GATAGAAATGTGATCCAGGCAAGCGTCTTTTCGGGGATGCCCTCG # Right flank : TCAGTTTCCACCTCGAATCGGGCATCGCCACAATTTTTTCAAAAAGGAGTTTTCCATGCATACCGTTCCCCTTACCCATCAGCTCGTCACCATCCAGGACGACTTTGACCTCGACAAAATCATCGAAAGCGGCCAGTGCTTCCGGCCGCAGAAACTGGCCGACGGGCGCTACCGTTTTCTTTCCGGCGGCGCACTCCTTTATCTGACTCCGCTGGGCGCTGGGCAATACGACGCTGCATGGTATGGCTCAGATTGGGAGTGCTGGGCCAACTACTTTGATTTGGGCCGGAACTATGCCGCGCTGCGGTGCAGCTTGGCGGGACAGAGCAGCTATCTGGACAAATCGCTCGAATTTGGGCAGGGCATCCGAATCCTGCATCAGGACCCATGGGAAATGCTCATCACCTTTCTTATCTCCCAGCGCAAGAGCATTCCGGCCATCCGCACCGCCGTAGAACGCCTTGCCCGGTGCTGCGGCGAACCGCTCAGTGCCGAAGGCG # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-1.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCTCCACACGGAGGGCGTGGATAGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 32480-32909 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPXK010000004.1 Faecalibacterium prausnitzii strain DFI.5.40 KFMDPPGG_4, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 32480 31 100.0 35 ............................... GTGATGACTTACGACGAACAGAAAGCACTTGCTCG 32546 31 100.0 38 ............................... CCGTTCGTGAAGTATGCACTCACTGGAGACGTCTACGG 32615 31 100.0 33 ............................... CAAAATGTTCCTGGTTACTCTGTTCGTCCTGGG 32679 31 100.0 35 ............................... GTCCATTCGGCTCGATATGCTGCGGCTCATCGGCA 32745 31 100.0 35 ............................... TTTTTCACGATTTATAACATTTTTTACACGTTCTA 32811 31 100.0 37 ............................... GACGGCTCCTGTTCTTGCGGGCGTTGTCATTGCAGAA 32879 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 7 31 100.0 36 TTATCGTCCCCTTGCGGGGATAAGCTGCAAT # Left flank : CAGATAAACGATATAGGCCGGGGAATCGGCTGGCAGCGCCTTTGCTGCACCGCGCAGCGCGGCGGAGTGGTGGTAGCGCACACAGTCCAGCGCCGGTGCCCAGCCTGCACCGGGCAAAACGCCGTGCAAAAACTGGTAGCCCTGTTCACTGTGGCTACCGCGCTGCCCACCGGCACGGTACACCGCTTTGCCGGTGTCGTGCAGCAGCCCGCCATAGGTGGACTGCAGGGTGAGAACGTTCAAAATACCATCTCCTTTATGAATTATGGAAGAATTGCACAATAAACAGAAAACGTATTTGTTAATTTTGTAAGAGATGCTTGGAATTGGCTTTATTATAACACATTTTGTCGCCATGCAAAAGCCGCAGCAGAGAAAATATCACAGCAGCTGCGATCGTTCCGTTCATAGAGGGACAGCCCACGGAAAACAAAGAGTTAAGGTTTGCAAAAGAAAAACTCCGCATCTTTTTTGATGCGGAGTTTTTTGCTCCCTCGCGG # Right flank : TAGCAGAACTGCCCCAAAAAGAAACTCTTTTCCTGCGTTTTTTAAGGCGTGTTCTGCAATCACAAGATAAATATAGCACATTGACTGCAAAAATAAAAGATATTTCCGAATAAAAAGTTGGAAATTGGTGGTGCGAACCCTGTGCCAGATTGGGGAAAACTAGGCGGTAGAAAAGGAGGTTCGCCCCCCGAACTGTTGACTTCAGGGCATCGGGCCATATCGCCGGAACCCGGCAAACACAAAAATGCTGCGCTTCAGGGTGCTGCCGTCCGGGTAGGTGGTCTCCTGACTCTTGCGGCGGGAGCAGGCGGCCAGCGTGGGGATGCCCGCGGCTTCCAGACGCTGGACTACCCGGTACACAAAGGTGCACTCGCCCTGACAGAGCACGGCGTCCGGGTTAAGGTGCAGGATGTGGTCGGCGTATACCGCGGCAAGGGAGTCCAGTGCGGCCTCGTCGGCGGCGGGGTCGATGGCGGGAAAGGCAAGATCGACCACCTTGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTATCGTCCCCTTGCGGGGATAAGCTGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 37031-37262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPXK010000004.1 Faecalibacterium prausnitzii strain DFI.5.40 KFMDPPGG_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 37031 31 93.5 36 ...TT.......................... TTGCATGGTTCTGAAATGGAGATTTCACTCCCGCGG 37098 31 100.0 35 ............................... GAAAGAGATTAAGACTGTCGCAGCTGTTCTGGAAG 37164 31 100.0 35 ............................... AGGCATACGACGAGATTTACATTTCGGTCTACGAG 37230 31 83.9 0 ...................G..TT..A.T.. | T,G [37249,37253] ========== ====== ====== ====== =============================== ==================================== ================== 4 31 94.3 36 TTTCCGTCCCCTTGCGGGGATAAATTGCAAT # Left flank : TTCTGCCGCCTGACTTTGATGCAGAAGGAATATCCCTATACAACAGACCTGCGCCTGACCCTAAGCCGGGACGATGCAGAAGGCAATATGCTGTTCGGCGTAGCAAATGATGCAGAAATGCACGACTATCTGGATATGGTGCTTGCCTCTGGGCAGCTGGTCATCGACCCTGCCATCCGCCCGCAGCTGGAGCAGGCTGCCCTGCTCTATCAGCGCGTGATGCAGTACCGCAACCAGATCAATCACGCCAGCGCCAGCGACCTAGGCTTACAGAGCGAGCGCGTTCTGCCGCTGGATACAGAGCACATTAAAGAGACCCTGCAAAAGATCGCCGCCTACCTGCATGAGATCCGCCCCTTGAAGCGGAACGTCCCGCAAGGCGTCAAGGCGCTGCCTGTCACAAAGACGATTCCGGCAGGCGCAGTTCCCAACCTGTAAAATAGAATATAAGAAAAAGCAAAGCACCTCCGCTGCTGGCAAATGCCAGTGGCAGAGGTGCT # Right flank : TACCACACATTGAGTCAAAAGAAAAGAACTATACACCGGAGAAGCGCGGATGGAGCAGAAAAGATAAGGCATAAAGATCACCTCGATTCGGCAGAAGGAGCGTCAAAGCCCTGAATGGGCAGGCCGAGAAAGTATTCCTCGATGCGGTCCCAAAGCTGCTCGCTGGAAAAGCCGCTGGTAAACAGCCAGCTCATCAGCCGCACAGCATCGGTGTGGCGCTGGGCAATGCGCTCCGGCAGGTGGTTGCGGTAGAACCCGCGGTCAGCCAGCTCCAGGGTCTGGGTCTGGTTGACGTAGAGGTACAGGCGGCTGTTGGAGCCGCCCAGAAGGGCAAAGTGGAGCAGGTCCAGCTCTTCCAGAACGCCCAGAGCCGGGGTCAGACGCTCGCTGCCCTGCACAGAATCGTTCACCGGCAGATAGCGGCAGGTCTCGCCGCTGTGCAGAACAGCAAAGCTCTGCTCCAGCCACTGGAAAAACTCGCTGATGAACGGGTCCACGAC # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCGTCCCCTTGCGGGGATAAATTGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //