Array 1 127241-126969 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZWQ02000022.1 Escherichia fergusonii strain GTA-EF02 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127240 29 96.6 32 ............................C GAGGTGCCGCCAGTGTTATTTGATGCGATTTT 127179 29 100.0 32 ............................. CGCCATATCCCATGCCATGTATTCTCTATCGC 127118 29 100.0 32 ............................. CATATCAGGTATATCGTAACGGCGGGGCCGAC 127057 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 126996 28 79.3 0 .T..........T.........-.CT..C | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTAGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : AGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154366-152748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZWQ02000022.1 Escherichia fergusonii strain GTA-EF02 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 154365 29 100.0 32 ............................. CGAACGCATGGTCCACACAGAGAGCCAGTGGA 154304 29 100.0 32 ............................. CAAAATTAATTTTGTTTTATCCTCGTCCAATG 154243 29 100.0 32 ............................. ATCAGCCGGAATCTCTCGCCCCAACAGCAGCA 154182 29 100.0 32 ............................. TATTTGTTATAGCATAGCGAGACACAAATTAA 154121 29 100.0 32 ............................. GCGTGAAAGTTAAATTCCTGCTGGACCAGCAA 154060 29 100.0 32 ............................. TTATTTTTGCTTTCTCTGCGCAATACGTTCGC 153999 29 100.0 32 ............................. CATCACGCCTCACTAATTGAAAAGCTAATATT 153938 29 100.0 32 ............................. TTGCCCAGGCTTTTGCGAAAATTTGTGATTTG 153877 29 100.0 32 ............................. GCTGGGTATGTAGATGGCTGGAACGCCTGTCG 153816 29 100.0 32 ............................. CCAGTCGCTTTCAATTTTCGGCGTGTAGCCTT 153755 29 100.0 32 ............................. ATTTGCCTCATATGCCTCTGAGTCAAAGTTCG 153694 29 100.0 32 ............................. CCCTGTTTTCACATGTTTTGTCACGGAAAAAT 153633 29 100.0 32 ............................. CTGGGCGCTCTATTTATTGCACGGATGTTATG 153572 29 100.0 32 ............................. AATATTAAAACTCAGCGGAGTGCATGGCGATC 153511 29 100.0 32 ............................. ATTGCTATTTCAGCCAGCACAGTGCATCACAA 153450 29 100.0 32 ............................. CCCAGCGGAGTGATCAAGGTTCCTGGCTCGAT 153389 29 100.0 32 ............................. GCAATTTTCACCCAGGGATACCCGCTAAACCA 153328 29 100.0 32 ............................. CGACGCATTATTTTGGCTGGATGAATTAAACG 153267 29 100.0 32 ............................. TAACTGGTTTTGCGATGGTTGCGCCAGTAACG 153206 29 100.0 32 ............................. CTGAAACGCTCTTTAGCCGGTGCTTCTTTTTC 153145 29 100.0 32 ............................. GCAATTTTCACCCGGGGATACCCGCTAAACCA 153084 29 100.0 32 ............................. CCGACGGGTCAGATCGTCGCGGGCCGGATCAT 153023 29 100.0 32 ............................. GTTATCTTCTTTTTCAATCCATCCACCGACAT 152962 29 96.6 35 ............................A CCGTTTATTCTTATCGCTGGCGTTAACGTCCACAA 152898 29 93.1 32 .........A..T................ CCGAAAGTGGGCGACTACGCGGTCAACGAAGA 152837 29 100.0 32 ............................. GACACAGAGCGCCGCTATAGCGCCTATGCCAA 152776 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= =================================== ================== 27 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTTCTTTAGGATAACGGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATGAATCTCGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGATTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTACGATTCGCGTAGTCTTTTATTCTAAGGACATCGATTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGGACTTGTTATAATTCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //