Array 1 38262-36296 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQHW01000003.1 Haemophilus haemolyticus strain M28908 M28908_HUY4067A67_cleaned_ctg_7438, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 38261 32 100.0 36 ................................ TTTGAGTAAATCCCCACATTGAATGAAATATTTATC 38193 32 100.0 33 ................................ CCGACAAAGGGAATGATAAGAAAAAAGAATTCG 38128 32 100.0 34 ................................ AAAAGTTTTGCCTTTTGAACAAGGAGAAAACATA 38062 32 100.0 34 ................................ TAAATCACTGATTAATTTAGCATCATAATCTCTA 37996 32 100.0 33 ................................ TCTAGCCTCTGCTGTACCGCTTGTTAATACATA 37931 32 100.0 34 ................................ ATCTTTACGTTGTAATCGTCCTTTTCGGCCTAAA 37865 32 100.0 34 ................................ TGATGTGTCATTACAACGATACATTGTGGCTGTT 37799 32 100.0 35 ................................ AATTAATCTCTATTACTCTTCCAAGTATTAGTGCC 37732 32 100.0 34 ................................ CCTCTCGATAGAAAATCGGTATAAAGTTATTGCC 37666 32 100.0 35 ................................ TGGAATATGATTTTTTACGGCTTTTGCGTAGTCAT 37599 32 100.0 35 ................................ TGTAATTAATCGTAAAGAGGAAATTACAGATGAAA 37532 32 100.0 34 ................................ AAAGCCTTAGTCAATGCAATTAAACATAAAATCG 37466 32 100.0 35 ................................ TCTACAACAGGATTCGCTATTGCCGCCGCAGCATT 37399 32 100.0 34 ................................ CACCTAAAAATGTTTCCAACACCATAAAATTTAG 37333 32 100.0 35 ................................ GGTATGCCCTAACGAATAAAAGAAATCAGGCAATA 37266 32 100.0 34 ................................ TTTTGGTTATGAAACACCTGACGGAATTAATAAG 37200 32 100.0 34 ................................ GATTTAGCCCTAGAAACGACTTGTCCGCAATGTA 37134 32 100.0 34 ................................ CATTAGATGCTGGCAATCCAGTAGCCGGATTAAT 37068 32 100.0 37 ................................ ATCATAGGGATGATTTTGATCTCGATATTCGGGGGCG 36999 32 100.0 35 ................................ TGAGGAACGCAATTTAGACGACAGCCAAAAACGAG 36932 32 100.0 35 ................................ TCCAATAAAGGCGGAGGAAGTGCGGGTGCAAGCCT 36865 32 100.0 34 ................................ ATCGGATTAAGTTTTTTGCCATAACTTATGTCTC 36799 32 100.0 35 ................................ CCGATGTGTGAATGATAAAAAATAAAAATTCGTTT 36732 32 100.0 34 ................................ ATCTAATCGTTGCGCAAGTGAGCTGTGAGATAAG 36666 32 100.0 35 ................................ AGAAAAGTCAGCGTAAAATCGCAATCTTCCGAAAA 36599 32 100.0 35 ................................ ATGATCTAAAATGGCGAGAAGTGGAAAGAATAGAC 36532 32 100.0 37 ................................ AGCTTGTTTGATGATGACACCAATCGAGCTGTTGCAG 36463 32 100.0 35 ................................ GATGTCTGGCAAGAATACGGCACATTTTTTCGTAT 36396 32 81.2 37 ......A...T..G.T.....A..A....... AGCTCATACTTTCGCATACGTTGGTTGGCAAGCTCGA 36327 32 78.1 0 ......AG..T..G.TA.A............. | ========== ====== ====== ====== ================================ ===================================== ================== 30 32 98.6 35 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACTATGTTAATTCTGATTACTTACGACATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGCCGCATCGCAAAACATTGCTTAGATTACGGGGTTCGGGCACAATATTCGGTATTTGAATGCGATGTCACGCCTGATCAATGGGTTATGTTGAAAAACAAACTGTTGGAAACCTACGACTCTACATGTGACAGCCTGCGTTTTTACCATTTAGGAAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTGGATGTATTTAAAGATGTGCTTGTCATTTAGTTCGCTAACCTGGTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGACGATATGGCCGTTATACTTACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACGGTGTTTAATACGCTGATTTTTCTTGCTTTTTTATGTAGGGG # Right flank : GCTCACGCATTAAGCCAAGGGCAACCCTTACAACGCAGCTGTTTTAGCCAGCGTGCGTTAAAATAGTTCTGTTTTTTATTATTCAAATGTTATTTTTTTGTTAAATATATTTTACTTGAGTATAATGCTCAACATTATTCCTCACGGAAGAGAATCCGTAGAATAATGAGATTAATCGTAAATATAAGGAATAAAAATGGATTTCAATAGAATTATCGCTCACATGAATGATCATCACCAAGATGATATGGCTGCCCTTTGTAAAAAATTTGGTGGTGTAAATGAAATTACGGATGTGACATTAGTTAATGTAGATTTTGGTGGTTTAGATTTTAAATATAATGATGGCAAAACATTACGCGTAGAATTTCCGCAACAAGCTGACGAAGGTTCAATTAAACAAGCGATCATCAATCTTTGTGTAGAAAATAAACCAGTTGCAAATTACGATCGTATCAAAGCTAAAATTGATGAATTTCGTCAAGAGTTTAAAAGCTGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //