Array 1 76502-76682 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAH01000066.1 Fischerella thermalis WC246 NODE_97_length_96756_cov_25.255384, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 76502 36 100.0 37 .................................... AAACCATCAACGACGGCAACACACCAAACGAAACCAC 76575 36 100.0 36 .................................... TCTGCGTGGGCCATGCTTTTGATTGGCTCCGCCTGT 76647 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 100.0 37 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : TGTAATATCTAATTCTCGGCTATATCTAAACAATAGTTCTGGCGAACAGTTACTAAAGAACAGCTAGGATTAGCATCACCCTGCTCTGGAATTCTACTCATTCCCTGTAAGCTTTGCGGCTTTGCAATAAAGAAGCCTACAAAATAATTTTGTACTGTCATTAGTTAATTTAAAATGCGGATGAAAGGACTTGAACCTTCACGCCTCGCGGCACTAGAACCTAAATCTAGCGCGTCTGCCAATTCCGCCACATCCGCATCAGTTCCTTATCATAGCATAAAAGTTGTCTAGAGCAATAATTTTTACGAATTAAGAGCAACTACCGAAGTTCAGCCCAAATTCTGCAAATGCCTATTTTTGTGTTGTGAACTTCGGTTGTTTAGTACATAAGGGTTTTAGGCTTTTTGTTTGGAGGAATTGAGATGTTTTTGTCTGTAAATTATCTGAACTTCGGAAATCGGCTCTGGAAATCTTACTGGGTAACGGTTTAAAATAGGACT # Right flank : CTGAATGGAAACAATGGGAACCTAAATTACACCGACACGAGGTAATCGATGCTTGAATCCGCAGAGAATTTCCCAAGAAATTGTGTTTAGTTGATTTGCCCAATCATCAGCGGAGATTTGTTGTTTGCCATCTTGACCTAGTAGGGTGACTACCTCACCTTCTTGTATATCTGGTAAGGCACTGATATCTACCATCAGTTGATCCATTGTAATTGCGCCGATCTGTTGTACTCTTTGACCACGAATTAATACCTGCATTTTGTTGGAAAGATTGCGTGGAACACCATCGGCATAACCAATGCCAACAACAGCAATTCGCATTTCTTGCTTGGCAATAAATTGATGACTGTAACTCACACCAGTCCCAGCAGCAATGGTTTTGACTTGGGTGACTCTGGCCCTGACTTGCAAAACAGGTTTCAGGTTAATTTGCGATCGCAAATGTGTGGCTGGGTAAAGTCCGTAAATGAGTAAACCTGCACGCACCATATCATAGTGTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 8992-5990 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAH01000070.1 Fischerella thermalis WC246 NODE_104_length_32001_cov_23.892628, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 8991 37 100.0 37 ..................................... GCGAAATCTCTGGCTGCCTATTCGTCGATGCCGCCAA 8917 37 100.0 35 ..................................... GATCTCCACGAATTGCTCCGTGGAAAAACCACCCA 8845 37 100.0 34 ..................................... CCGGTGCATCGAGCATTCTGATAGATGAGATATA 8774 37 100.0 34 ..................................... CCTTCTATATCAATGCTGTGAAGGGCTTGTCTGC 8703 37 100.0 33 ..................................... CGATCGTATAGGGCGGGCTTCGACCTGACTAGC 8633 37 100.0 38 ..................................... CAGGGTATCCAGTACGGAATAGTAGCGGATACTCAGGA 8558 37 100.0 37 ..................................... ATTCTGGGGAGTGGAAGTCTGCGCTTTGGCAAGGGCA 8484 37 100.0 32 ..................................... GAGACCTGGGCACTCTCGATCATCAGCATCGC 8415 37 100.0 33 ..................................... CGTGTGCCCAAGCCAGAGCAAGGGCTGATGCCG 8345 37 100.0 35 ..................................... TGGGAGCGATCGCTCTCTGCGCAGAACTCGACCTA 8273 37 100.0 39 ..................................... GCATCGAGGAACCATACGACCGCGACGCGCATCCTGATC 8197 37 100.0 33 ..................................... CAGGACATGCACTTTCCCCATCTGTGCGATCGC 8127 37 100.0 34 ..................................... TGCCGCCAGCCACGGGCACCTACCCTGCTGCCTT 8056 37 100.0 33 ..................................... GGAGAAAACTACACAGGACTTCCACTATATATA 7986 37 100.0 35 ..................................... TCGGATGGCTGTGGGCGATCGCTGCCATTGCCGGA 7914 37 100.0 36 ..................................... TGGCGGCTCCGGCGCCCCCAGATGCTGGAGAGCCGG 7841 37 100.0 34 ..................................... ATCATCTCCGACGTACTGCCAGAAACAAGCCCAA 7770 37 100.0 35 ..................................... AAGAAATTCGACGGGCACGTACTCTATATCTCCAA 7698 37 100.0 33 ..................................... CAGGAGCCAAATCCTCGTCCCTCGCTGGCATCT 7628 37 100.0 34 ..................................... CCTTGGGGGCGGTATTTCCTCTCCCAGGATGGGG 7557 37 100.0 33 ..................................... CCTAGCGCGATCGCTTCCTGCACACTTTTTCCT 7487 37 100.0 35 ..................................... AACTCGATATCGGACTTGGTTACGATGTCCTCGGA 7415 37 100.0 37 ..................................... GGGACTGCCTGCTGCGATCGCGGCAGCCCACATCCAG 7341 37 100.0 35 ..................................... CCAAGATATATGGAACCGGATGGAGGCAGGCTAGA 7269 37 100.0 42 ..................................... CTGCTCGATGCATCTGCGATCGCTGATTAGGTTTGGCATCCG 7190 37 100.0 33 ..................................... CTCATACGTGACGACTTTTGTTTTGAACCCGGC 7120 37 100.0 36 ..................................... CTTGGTATTATCTCTGGAGATGCCGGTCTCCCTAGC 7047 37 100.0 34 ..................................... GATGACGTAGCTCGATTTCACCGAGGGGATCCCC 6976 37 100.0 36 ..................................... TCGTGCGCGGCAGAGTATCTGCTCTGCGCCTCTTCG 6903 37 100.0 40 ..................................... CAGGACAAAGACAGTCTTCGACGAGGACAGCGGGATGGAA 6826 37 100.0 35 ..................................... TCTCCACCTCGCCAGAGAACCTATTGATACGTAGG 6754 37 100.0 37 ..................................... TAAAAGAAAAGAGCGATCGCCGTAGCGCGATCGCTCC 6680 37 100.0 36 ..................................... TTCATCCGCTCCGGGGAGATCGAGGAAGCGCGGGCT 6607 37 100.0 37 ..................................... ACTCTATCTTGCGCCACGCTTATGCCACTCTTGGGTT 6533 37 100.0 37 ..................................... GAGCATGGCAAGGTCTTGGGGCGACATCCGCCCCAAC 6459 37 100.0 33 ..................................... CGCTTTGGGCAAGAATATCGAGTAGCGATGAAT 6389 37 100.0 35 ..................................... CTGTGCAGCGATCGCTATTCTTCGGGAAGAGAAAA 6317 37 100.0 36 ..................................... GGCAGCGACGCGGTAGGACAAAACTAGAATCTAACT 6244 37 100.0 37 ..................................... GGGGATGACCTCTCCACAATTTTCCCGAAGTTCTGGG 6170 37 100.0 33 ..................................... TGTGCCCTTCTGAATGAGGGCTTGAATAATGGG 6100 37 100.0 37 ..................................... TACCGGCTCCTGCCAGGGAGTCTGCCAGGAAATGGGA 6026 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 42 37 100.0 35 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCCGAAGATAAACGTCGTACCAAAATCCACAATATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGCAACCTAACTGAAACTCAGTATGCTAAATTGAGGTCGCGGCTAGCAAAACTCATTAAACCTGATGAAGACAGCATCCGCTTCTATTTTCTTTGTGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTGGCGAAATGCCAATGGATACTACGGTGTTTTTTGCTTGATGATGGTGCAAACCAGTAGGTGTAGAAAAAAAGCAATCAATTTTTGGGGCTGAAATGCTGATTCTGTCTAAGTTAGAGACTGATTTGATGGCAAATGAGGTCTGCACCTTTTCTGTAAATCTTACCCTGACTAGATTTGAGCCATTTTATACTCGTTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTAATCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCC # Right flank : TTCGACTCTGTCGACGACACGCTGGCTATCAATCNNNNNNNNNNCGATCGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCAGTGTTGAGTAGTAATTGCCAAGTTCCCACAATGCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCTGGGTGGCTACGAACTTGCCTGCATCAGACAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAGTCTCTCTTCCATTGCCCGAAGCACACTCGCCTCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCATTTGGGATGTCCTTCTCAAGGCAGTTCTGCGGAGGGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTACGCCCGGCTGGATGCGAGACAGCGATCGCAGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTTCTGTTTCCTGGAGTAGGTTGCCAGAGTCTGGTTGCAACTTAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 82240-90090 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAH01000077.1 Fischerella thermalis WC246 NODE_123_length_90076_cov_23.273525, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 82240 37 100.0 33 ..................................... TTGATTTTATCAGACCAGTGCCAGCACATGCCC 82310 37 100.0 34 ..................................... GCCATACGCAAGCTGCGAAAGAAAATAGCTGCCT 82381 37 100.0 41 ..................................... GACCTGACCTTGCCGCCAGGCACTGCGGTGGGCGATCGCAT 82459 37 100.0 44 ..................................... GTTGCTCCCGTTCCTGTGCCTCTTTAAGCTGTTTCTCAAGGTTG 82540 37 100.0 34 ..................................... TCTGCCAAGAGCGATCGCCGCTCCGATCCCGATA 82611 37 100.0 35 ..................................... TCCATCGTAGCGCGATCGCTCCCCAAAGAAAATGC 82683 37 100.0 35 ..................................... CGGCTCAATGGCGCGATCGCGTACACTATCGAATT 82755 37 100.0 35 ..................................... GGGAGAATAGCGATCGCTGCTGCACAGACTTCCCA 82827 37 100.0 36 ..................................... GAGGGGTGGGACTGCCTCGCCATAGGAATGCACGTG 82900 37 100.0 32 ..................................... AAGATTCCACGCCTCGGTGGGATTGCGGCGGG 82969 37 100.0 35 ..................................... TTGTCCTACCGCGTCGGCAGCGACGCGGTTTTTTT 83041 37 100.0 35 ..................................... GGTAAGGAGGGGCTGATGCTTTTGGAAACCACTGG 83113 37 100.0 40 ..................................... ATCGTGGAGCAGCAGGGTGCCCTCTATCTGCTCCAGTTCG 83190 37 100.0 37 ..................................... CAACGCTTGCTGTTCGGATGGCTGCTCGGATGGCTGC 83264 37 100.0 43 ..................................... GGATGCTGCTAGGAAATGGGGGTGCGATCGTGTCGGATGCTGC 83344 37 100.0 36 ..................................... AAAGAGGCGATCGCGTGCCTCCTTAGTCCTCTCCCG 83417 37 100.0 41 ..................................... ACGAAGAAATCAAGGGCTGCTGCGACACCTGGACTATCCAG 83495 37 100.0 33 ..................................... ACAACAGCGCCGACAAGTTCGTGGACGCGATCG 83565 37 100.0 37 ..................................... CTGAGTGTGGCTACAAATGGGGCAAGCTGGATCTAAA 83639 37 100.0 32 ..................................... GGCGGCATTCCTAGCGGGGAGCAGGGACGAAC 83708 37 100.0 34 ..................................... GGCGACTGCCGGACGAGTTGCCCGGAGCCATCGA 83779 37 100.0 35 ..................................... CAATCGCTGGAGGTACACGGCTCGATTTCTCGGAG 83851 37 100.0 35 ..................................... ATCGGCATCCATGGAGATTGCATTAGCGTCCGGTG 83923 37 100.0 37 ..................................... CTGCATACCAGCGGGCATTGCCTGGCACTCTGCGGTC 83997 37 100.0 39 ..................................... CTCTGAGTACCTGCTGGATGACCAGGGTAACCGCTTCTT 84073 37 100.0 34 ..................................... AGGAGACTCGACCCGTCGGGCAGAAAAGTCAAGC 84144 37 100.0 33 ..................................... TCCCGGAGACCCGCGAAAATGTGACATATTACG 84214 37 100.0 36 ..................................... AGTCTTGCGCCAGTAGTTCGGACTTGGGCTGGATTC 84287 37 100.0 34 ..................................... TCTTTGAGCTGCCATCCTGGAGCAGAATCGCTTC 84358 37 100.0 38 ..................................... GCAACGCGATCGAAGAAAGGATCGGGGTAGCGATCGCG 84433 37 100.0 38 ..................................... ATTTACGGAGAGCGGTGTAGTGAAATCGCTCTCCCCCA 84508 37 100.0 32 ..................................... ATCACCATCGAATGCTCCCAGCAAAATGGTGA 84577 37 100.0 33 ..................................... CGCGACTCGCTCCTGTGCATCAGGCAGCTATTT 84647 37 100.0 35 ..................................... CTAGAGCGATCGCGCTCATCGCTTGACTCCCCCGC 84719 37 100.0 33 ..................................... AGCGATAACCAAGTGATCACGCTGGAAGACTTG 84789 37 100.0 36 ..................................... CAGTTCCTGGGAGCCATCTGGAGTAACGCCCCAGAG 84862 37 100.0 34 ..................................... AATATCTGCTGCCCATCGTAGCCAGCCCACAATC 84933 37 100.0 35 ..................................... CTCGGAGAGTACGCTGCCAGATTCTGCGCAGCGAT 85005 37 100.0 37 ..................................... ACTTGCAGAATCCCATCGAGGTAGGCTATCTGCAAGT 85079 37 100.0 41 ..................................... CGGGATCGAGGCAGGGAGGTTGGGGGCGATGGTCAGGGTGG 85157 37 100.0 43 ..................................... TGTGCCCTTCTGAATGAGGGCTTGAATAATGGGTGTGTCCCGG 85237 37 100.0 36 ..................................... CGCCAGCCAGCCAAATCAGCGACAGGATGTCGCTCG 85310 37 100.0 34 ..................................... GGGGAGCGATCGCAGCTTCGGACTGGGGAGCGAT 85381 37 100.0 34 ..................................... GCTCGCTGTGACCGAGAAGACCATATCTTCCAGA 85452 37 100.0 41 ..................................... TCTCTGAGGAGATGATTAATACTTGGTCTGGGTCTACCACC 85530 37 100.0 36 ..................................... CTGGGCGAACACCCCATCACCCGATGGGCACTGGGC 85603 37 100.0 35 ..................................... GCCCACCGAGATCAGTGCAGCATCTGATAGCGATC 85675 37 100.0 33 ..................................... CTTTCTATCGGGCAGACAGAGTCTTCTAATGTC 85745 37 100.0 34 ..................................... TGCGATCGCACCAAAAGAAAAGCCGGCTACGAGA 85816 37 100.0 35 ..................................... CGGCAGCTTTGGCTTGCTCTTTCGCTCCGAGGTTG 85888 37 100.0 38 ..................................... TGACGGCAGCTTGTCGGACAAGGGAGATCCGATTGGAG 85963 37 100.0 33 ..................................... ATGCGGTAGTAATCCTCCCTCGCGATCGCGGCG 86033 37 100.0 34 ..................................... ATCGCCGAAGCCAGCGCCACCGAACCGGGACTCG 86104 37 100.0 36 ..................................... TTCGCAAGAGCGCTTCAAATTATCGCAACCCCCCAG 86177 37 100.0 39 ..................................... TTGAGGAATTCGCCGATGAACGTGGAGATTGCCTTGAGT 86253 37 100.0 35 ..................................... AGAGGTGAAGTCTATGAACTCGACCTGGTCTCCTA 86325 37 100.0 44 ..................................... TCTCCAATGCGTGGGGCGATCGCTTTGGATGCGATCGCTCTGGG 86406 37 100.0 36 ..................................... TTGGAAGATGATCAGTGTATTGCCGATGATTTCAAA 86479 37 100.0 34 ..................................... CCCGCACTAGCAAGTACGGGCAACTAGCCCGCTA 86550 37 100.0 38 ..................................... AAAAGCCCTTTGACGAGTCGATATGGAAAAAATATGGA 86625 37 100.0 36 ..................................... GCGCCGCGGGCACCTTCGATGGCACGAACTATCCGG 86698 37 100.0 35 ..................................... TCTCCATCTCTTTGTTTAGCGACAATTAGTTCAGC 86770 37 100.0 34 ..................................... GTAGCGCACCTCCCTACCGTCGCGCCACCGGACG 86841 37 100.0 33 ..................................... AAAAAGAAATTAGCTGCATGAACACGGAGAGGA 86911 37 100.0 37 ..................................... GTCTTAGGGCAGACCAGACCCCAGAGATGCCAGAGGT 86985 37 100.0 39 ..................................... AGTATATTTGCGGCTTTGTTGGTCATCACGTACAGCAAA 87061 37 100.0 37 ..................................... TGGAAGTGGTCGACGATCATGTAGCGGCGCTCGAACT 87135 37 100.0 34 ..................................... CAAGCTCTGCCTTCGGCTTCGGGTCTGGCGTGCT 87206 37 100.0 35 ..................................... CCATAGAGATCGGGGTCTTTGACCCGGACGCGATC 87278 37 100.0 33 ..................................... AAGCAACGCCCAACCGCGCCTGGTGGTAGCCCT 87348 37 100.0 39 ..................................... AACCCGCCTTGCTCGATAGACTCCAGAACCCCTTCGACC 87424 37 100.0 34 ..................................... ATACCATCCCGACACCGTACCCTCAGATCCTCCA 87495 37 100.0 39 ..................................... GATATACATGTGCTATACTGACTATATACCAAGGAGGGC 87571 37 100.0 34 ..................................... GGCACAGCTAGGAATCGCGAAGCTCTCGACGCTG 87642 37 100.0 35 ..................................... GGCAGATTCCATCTTCGAGAACGTCCTCGGCTCGG 87714 37 100.0 35 ..................................... CCCGTCGACGAAGACGAAGTCGAGCCGGACTTGGC 87786 37 100.0 35 ..................................... ATCGGCGCCTCCGCCCTTCATAGCAAGGAACGAGA 87858 37 100.0 34 ..................................... TGCGCTCTTGGCAAGGGCAAGAGCGATCGCGCCA 87929 37 100.0 36 ..................................... AACGCCTCGTCTATGAGGCGCTGGTCTTCCGGCGAT 88002 37 100.0 34 ..................................... GCGCCATCCCGCCAGAAGAGCTTGCGCTGATTCT 88073 37 100.0 40 ..................................... TTCAGGAATTCGCCAACAAAGACGCTGATCGCCTTGATGA 88150 37 100.0 41 ..................................... CACGAAGGATGTGGCGGCTGCTACGGAGCAGTTCCTGAAGG 88228 37 100.0 34 ..................................... AAGGCGCGATCGCCCCTCCGGCACGCTTGCGCGA 88299 37 100.0 34 ..................................... CGCACCGACCCCACCTTTCAAGGTGCTGGCGATC 88370 37 100.0 36 ..................................... GGGTTTCTCCGGGCTTCGCACTCAGCCTCTTCGCTT 88443 37 100.0 41 ..................................... GGCGGGGAAATCGATGGAGGCGGGTGCTACCCTCTGGGCAT 88521 37 100.0 38 ..................................... TTTACAAAAATTGTAGCGATGATCGCGCTCACTCCACA 88596 37 100.0 42 ..................................... GAGGCGAGAGCGCAGGCATGAGAAGTCAGGAAGAAGATGAGA 88675 37 100.0 36 ..................................... TCCAGTCTGGCGATCTTTTGGATGTAGTCGGGATTT 88748 37 100.0 36 ..................................... TCGAGATCGAAATCGGGATCAATGAGTCTGGCTTGG 88821 37 100.0 42 ..................................... ACAGAATGAAGAAAACGCCATTTTGCTTGCAATGTCGGCATT 88900 37 100.0 35 ..................................... GGCATCATTATTAGAGGCGGGGAGCAGAGAAGAAG 88972 37 100.0 35 ..................................... GAAGAGATGTAGGAGCGTACGAGATTCCCACGCTC 89044 37 100.0 34 ..................................... GAACGCAAAATCGCCAAAGAGTACAAGCTGATTA 89115 37 100.0 34 ..................................... CGAGCAGAGCGATCGCCGACCCGGATCTCAATCG 89186 37 100.0 35 ..................................... GGAGATTTTCGGGATCCTGCGCAATCCCGTAGACA 89258 37 100.0 32 ..................................... TTCTTACAGACTGCACACTGCCCTAGTTGGTA 89327 37 100.0 35 ..................................... CCCGACGATCGCTAGCCTGTGCCCATTATCCTTGG 89399 37 100.0 34 ..................................... CTCTTATTTGTTTCTAGGTCATACAGATATGGGT 89470 37 100.0 35 ..................................... GACATCTACTGTGGGTAGATCTTCCAAGCCGGATG 89542 37 100.0 35 ..................................... TTGTAATAACCCTTACTCTCCACTAATGGCATTCC 89614 37 100.0 38 ..................................... GATGATGCTTTAAATTCTGCTAGGCAGATAGCCAAAAG 89689 37 100.0 37 ..................................... TTTTACTACCCCCAATAGAGAAATCGACTCGATCTTT 89763 37 100.0 33 ..................................... GCGCAATGATAGAAGTTAACCGAATTATCTCGG 89833 37 100.0 39 ..................................... TGGACTGGCAGGTACGGTGATTGGTTCGGTATGCTATGC 89909 37 100.0 36 ..................................... TTCATATAAGGGCAAGCTTGGAGACGTGATAGTAGT 89982 37 100.0 35 ..................................... TTCGAGTTTACTTGCCACCGCAGTTACGTTTTTTT 90054 35 83.8 0 .........................G.C.GC....-- | TT [90083] Deletion [90089] ========== ====== ====== ====== ===================================== ============================================ ================== 108 37 99.8 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : GTCCAAAAATTAACAAGGCGACGATCGCGATTACCCCTACTTCTGTCCATCCCAGTCCAAACATAAGTGTCTCCCGTGAAAAACTCTACTTAAAATATAGTAGGGTGGGGATGTATGGATGATGTTGTGATTTTATTTGGGGTGTGTGGTTGAGTATCTTTTTTGAACCACAAAGCCACAAAGACACAAAGAAAAATCGATTTTGAAGTCCTAGTGTTATGGCGATCGCCCTAGGCTACTTAGGCTTGATTGGTGCAAACCTGTAGGTGTTTTTTGGAGCAGGTGAATTTTAATCGCTGGAAGCCCTACCAGTTCTGCTTTTGAATGCTTCTAAGTCCAAAAGGGGTTTGCACCAATTGTGAAATGCTTGCCAGACAAGGTTTTGAGCCTATTTTTTCTTCTCCGCCCTTGACATTCCGATGGCTGAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCA # Right flank : TTTGGTCATGAATTATGTGTGCATACATTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 50837-49780 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAH01000088.1 Fischerella thermalis WC246 NODE_186_length_50880_cov_23.771620, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 50836 37 100.0 34 ..................................... GATTTTTTCGACGATGCCTTGTCCCCAGCGATTG 50765 37 100.0 34 ..................................... ATCCAGTGGCACAAGTACTACTACGCTTCCTCTG 50694 37 100.0 33 ..................................... GCTGCAAAAGCCATCTGCCCCGAAAGAAAGCGC 50624 37 100.0 38 ..................................... TGAGGGGACTTTCCTCCATTGGGGAGCAATATTCTCCG 50549 37 100.0 37 ..................................... GCGCCACAAAGGATGCGATCGCGCCCCAACTCCGAGT 50475 37 100.0 37 ..................................... CGCTATTGACTCATTGGGACTAGTGGGACATTTGTTG 50401 37 100.0 40 ..................................... ATACTCGCTCATTATTATGGAGGGGTTGTCGGTCACCGTG 50324 37 100.0 36 ..................................... TCCGAGGAGGTGCCAGTTGGTGGAACCCAGCCACGG 50251 37 100.0 35 ..................................... CTAGCTGATTAGGGTGCTCATCGAGCACCAGAACA 50179 37 100.0 34 ..................................... GAGATTCGATAAATCCAGCGATCGCTCTCCTTCG 50108 37 100.0 33 ..................................... ATGCCGCTTTCGGGGAGCACGCTGTGCTCCCTA 50038 37 100.0 40 ..................................... CAAATACGAGCAACGAGCACACTTGCCAGCGCTAACTTTG 49961 37 100.0 35 ..................................... CGATTGAGCAGAGTAATCCTCCTTCGTGCCAAATA 49889 37 100.0 36 ..................................... AGCGGCACTGCTGCGATATCTGCCGCCGGAATAATT 49816 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 99.8 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CACTCAAAAGCTCTTTAGATTTTCTTTACGAATCACCTCTTAGGGATTGAAACAGGTTGATTCCCAACTGATGGGCGCGTGCATTGA # Right flank : CCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGATTTTGTTTTATCTTTTAATTGACAAAAACTCAATCCTTGGCGCTCTTGGCGTCTTGGTGGTTCATTATATCACCGCTACGAACAGACCAGCAAGACTGAAACTAGCAGTGGTAATTGCAAAAGTTCCCGTTTGCAATAAATTAACTAAAGTTCCTCCGATGACTGCACCCACAATTCCTAACAGCATTGTTGCCAGGATACCACCACCTTGGTAACCAGGATAAATTGCTTTGGCGATCGCGCCAGCCAACAAACCTAATACAATCCAAGCAAGAAGATTCATGATTCGACTCCTTAATAGTTGCGAACAGAATATAGTTGAAGATAGAGTTTTAGAGATAATAAGGTTAGAGGTTTATAGACCCTAGACGTTCGCAAATTTCGACCGCTTTATCGAGGTTTTACCTCTCGTTATTTGCGACA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 2901-7565 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAH01000074.1 Fischerella thermalis WC246 NODE_111_length_7544_cov_20.544407, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 2901 37 100.0 33 ..................................... TCGGCATCAGTAACGACTGACCTGATTTTATCA 2971 37 100.0 38 ..................................... CGCTAGCCACCTCGAATGGGCTGGCATCGGGGACAATT 3046 37 100.0 34 ..................................... CAATGCTGAAGAAATACCTAATCAGAGGCAGGGA 3117 37 100.0 36 ..................................... TTTTTCGGCAGCAAATCACGCTTTGGGCAAATCAGC 3190 37 100.0 36 ..................................... GGGGAGTCATGTATCGCTTCATAAAAATGGCTCCAC 3263 37 100.0 35 ..................................... ATTTAGCTGCCCATTAGAGGCCTCACGTATCCGGT 3335 37 100.0 34 ..................................... CCGGACATCGTACTCGAAGCCGGCTGGTCTCTCG 3406 37 100.0 36 ..................................... GTATCTTTCCCCACCCCTGTCTTTGTGACAACTAGG 3479 37 100.0 34 ..................................... GAGGGCCGGCTCCATGCCGACCGGCTCATGATGG 3550 37 100.0 36 ..................................... CGGGACTAGGAAGCTCCAAGCATCCTTGCCCGACAT 3623 37 100.0 41 ..................................... GCAACTCGCGAGGAGTAGCTGCTTCCAGGGTGCGATCGCTG 3701 37 100.0 35 ..................................... TTTGCTCGCGATCGCGAATGCCTCAGATACGAGGC 3773 37 100.0 37 ..................................... GTTGGGTGCGTAGACGCGGAGCGGCTTCTCGAAGAGT 3847 37 100.0 39 ..................................... GCCTTGGCAGGAGCCGGTAAATACGCCGAGGGCATTCCC 3923 37 100.0 34 ..................................... GCGCTCGCCTTTTCCTCGGTATTGGATGGGCTGA 3994 37 100.0 33 ..................................... GCGATCCAGTCGGGGCGGTAAATCTCCTTAATG 4064 37 100.0 37 ..................................... CGCGAAGCGTGCCGGAGGCATTCGCCCCCCATTGTGG 4138 37 100.0 36 ..................................... GAGACCTGGGCACTCTCGATCATCAGGATCGCCAAA 4211 37 100.0 36 ..................................... CGCACAGCGATCGCACTCTCCGGGATGCTGCCAGAG 4284 37 100.0 39 ..................................... GAGTGTATTCGCTTCACAAATACATCGATGCGATCGCCC 4360 37 100.0 33 ..................................... TATATCCTGGCGATCGCGAGCTGCGCTTTTATC 4430 37 100.0 39 ..................................... TCCCTGGGGGAACTCCGAGACATGGATTGGCAGTGGCGG 4506 37 100.0 33 ..................................... CTCCTGCCGAATCGATACCACCGAGTACTGCAT 4576 37 100.0 38 ..................................... CTTGCAGAGAGAGATCCGGGACAGAACGACTGTCTGGT 4651 37 100.0 34 ..................................... TAGTGGCACTCCCACACCCAGCCAGGAGTTCGGG 4722 37 100.0 33 ..................................... GCGATCGCGCCCCATTTGCGAGCGCCGACCAGG 4792 37 100.0 41 ..................................... GGGGTGCCGAGGACTTGGGGTGTGAATGGGCTGGGGGTGAG 4870 37 100.0 33 ..................................... AGGCCAGGGCATTTACGCATAATGCGTGATAGG 4940 37 100.0 33 ..................................... AGGGTGGCTCCATCGGATGCCGTGACGGCAAAG 5010 37 100.0 36 ..................................... GTCGTAGGCAAGACAGTTGCATTCCAGGATGAATTC 5083 37 100.0 39 ..................................... CCACGCAAGAAGTCCATCGGAAACTCGGCGAATATTTGA 5159 37 100.0 41 ..................................... GATCGCCATTCCAATATGCTCTTCGAGAGCGATCGCGGTGG 5237 37 100.0 40 ..................................... CCGGACTCGCCAGCGAAGATGATGCGCAGCGATCGCAGAT 5314 37 100.0 35 ..................................... AATTCCCATCGGCGCAAATCATTTCTGATGAGCTG 5386 37 100.0 34 ..................................... CGATGTGGGCAGAAATGCACACACCGGTGCGGTT 5457 37 100.0 43 ..................................... GAAGCGATCGCCCAATTCCATCGCGATCGCTCCGAATGGGAGA 5537 37 100.0 38 ..................................... GCTTATATCTTCTGGCGCTGCCGTGCCAGCCCAGCCCC 5612 37 100.0 37 ..................................... TTTTGTGCGCGTACTCTTCGAGAAGCCGCTCCGCGTC 5686 37 100.0 36 ..................................... TACCGATTCCGGGGTGGGACAGCCCAGCACCGCCAA 5759 37 100.0 44 ..................................... GTTTTCTCTGCCCGGAGGATAGCGAATGCCTCCGGCACGCTTCG 5840 37 100.0 39 ..................................... GAGGCAACGCTAATGTCCGCGGCATCTTCGCCGACGAAG 5916 37 100.0 39 ..................................... CACGATTGGAGGGCTTGACTTCCCGCCGACTATTGCTCC 5992 37 100.0 34 ..................................... CGATGTCGGAGGCGATCGCTCTTCCCTCTCCCAT 6063 37 100.0 37 ..................................... GACCACGAAGATTCTCAGTGCCTCTTGCTGATAGTCC 6137 37 100.0 39 ..................................... TTCGTGACGATGATGTCGCACTTACTCAGCTCGCCCAAA 6213 37 100.0 34 ..................................... GGGGCGATCGCGGTTGGGAGCGATCGTTCTAGAG 6284 37 100.0 35 ..................................... GCCAAGCCCCATCCATCATCCAAGAAGCGGGTGAA 6356 37 100.0 39 ..................................... TCAGGGTCTTTGATTCTTACGCGATCGCCGACACCGATC 6432 37 100.0 35 ..................................... TGGATCGCTGGGATACCTGTAGTCCCATGTGAGGA 6504 37 100.0 40 ..................................... TTGATATCGATCTCGGTTCCGATGTACAAGGGGCCGGTTC 6581 37 100.0 35 ..................................... GTACTCGCCACGGCCGACTGTGGCGATTTCCCACC 6653 37 100.0 34 ..................................... CTGATATCTGGGTGGACGGGCACTTCAGGGAAGT 6724 37 100.0 33 ..................................... TTATCCAATGCATTAAGAGCCTTGAAAGTAAAA 6794 37 100.0 38 ..................................... ATTCAAAAAGAAGGACATCAAATTGTTTATGCGTACGC 6869 37 100.0 33 ..................................... GACCATCCGCCCAATCTTTCTTCTTTGTTCCCA 6939 37 100.0 36 ..................................... TGTCTAGCGATCGCTGCACACTTTTTCCTATATATA 7012 37 100.0 34 ..................................... AGGCATATTCTCCGACGCGATTGGATCGAAAAGC 7083 37 100.0 41 ..................................... GCTCGCGACGACGGCATGGCAACGTTCACCGTCGCCGAGGA 7161 37 100.0 33 ..................................... TCCGCTTTTCTTTTTGCTAGTAAGCGCGATCGC 7231 37 100.0 43 ..................................... TCCGAGCAGGCACTCAAGCAAAGCGGCTTAGGCGCGATCGCGA 7311 37 100.0 33 ..................................... GAGATTATTTTCACGACATTTTTTGGTTTTCAA 7381 37 100.0 35 ..................................... CGAACGAGATGCCATATATTTTCTGGCTAACTCTG 7453 37 100.0 34 ..................................... GTTCAGGAGTTAGTGACCTATAAAAATCTAGTCT 7524 37 97.3 0 ....................................G | A,CT,C,T [7551,7553,7559,7561] ========== ====== ====== ====== ===================================== ============================================ ================== 64 37 100.0 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCTGACGGTACAGCAGCAAATATTCAACGCACAGACTCAATCAAAGATGGTGTGATTACAAACTCTTGGACGATCGCAACTGGTGATCCTATGGGTAAGCATAAAATAGAAGTTTATATTGGCGATCGCCGTATTGCTACTTTTGAGTTCGAGGTGGTTCCAGCTAAACGGCAAAAGCCAGCTCCAAAAGCGTAGTTACAAGTTTTGCTATAGTCGATAAATAAAGATTAATCTCTCTTCAGCTTAGAGTTGGTGCAAACCTGTAGGTGTTTAAAAAAAGCAGTCAAATTTAATGGCTACAAGCCCTACCTGTTATGGCTTTGAACCCTTTTACACTCAGATAGAGGTTTGCACCAATTCTGAAAGTCTTACCAGCAAAGCTTTTGACCTATTTTTTCATAATTCATCTTGACACCTCGATGGCTGAAAAGCTATATTTTGTCCAGGTCTGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTCCTGAATCTAGCA # Right flank : TAAATATTAAATAGCCAATCGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 36952-32387 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAH01000100.1 Fischerella thermalis WC246 NODE_324_length_56773_cov_22.839325, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 36951 37 100.0 34 ..................................... ACCCCCATACCATGTCGTGCCCACGGCTAGCGGG 36880 37 100.0 35 ..................................... GCCGGTGTGTACATGGGACACACCTCGTACAAAGA 36808 37 100.0 36 ..................................... GTGGCGAGGCATCTCTCCCTTCTCCGCGACCTGCGA 36735 37 100.0 40 ..................................... GGATGGCACGCAGAAACAGCTTGCGATTGGGGATTCGAGC 36658 37 100.0 36 ..................................... GGCGGCACCCTGAATCTGGGCGTAATACACCTGCTC 36585 37 100.0 40 ..................................... ACGCAATGGCACAAATACTACTACGCTTCTTCCGCCGAAG 36508 37 100.0 37 ..................................... CCAGATTCATTGAACCATCTGTAGAAGGTCGATGAGG 36434 37 100.0 45 ..................................... CGCGGATTGGTATCGCCGATTCGCCGGGCAGTCGCTTTTGGGGGG 36352 37 100.0 38 ..................................... CGGGTCGGCGATCGCGATTACGTCGAAGCGGGAGTTCG 36277 37 100.0 34 ..................................... CGGTGCCCAGAGAGATGGGATGAAGTCTGGGTCG 36206 37 100.0 35 ..................................... GGGCAGGGCATGGTCGAGCAGTTGACCGAGGAATC 36134 37 100.0 36 ..................................... TGGCTCCTCCCTCGGTCTTGAGGAACTCGCCGATGA 36061 37 100.0 34 ..................................... GATAGGGTCTGGTCGTTGCCGGGTGTGGCGCGAA 35990 37 100.0 37 ..................................... TTGGCAGTTTGCAGCGATCGCATTGATTCCTCGGTCA 35916 37 100.0 36 ..................................... TAGGGACAGGTTGGTTGCTTATTCTTCCGAGGTTGC 35843 37 100.0 34 ..................................... TCGGCTCCGATGCGATACCCATTCGGCTTGGCTC 35772 37 100.0 34 ..................................... TTCGTCGTAACTCCTCTTCGCCCGGAACCCGGCG 35701 37 100.0 36 ..................................... AAGGAGGATAGCGCGCCCATGTACGCCGAACCCATA 35628 37 100.0 38 ..................................... GCCGGCTAGCCAAATCAGCGACAGGATGTCGGTCACGC 35553 37 100.0 34 ..................................... TCCCTTCGGCTTGGCTCGCCTCCAGAGCCGACGA 35482 37 100.0 35 ..................................... TTTAGAAATTCGCCGATGAATGCGGAGAACGCTTT 35410 37 100.0 37 ..................................... AGGCGCGTCCGGGTGCTTGGTGCAGCCCGGATCGGAA 35336 37 100.0 36 ..................................... TTGGCGATCGCGCCATTGATCGTGATAGGTGGATAG 35263 37 100.0 36 ..................................... AGCTTCTTGGGGAGCCATGGGCACCACACCCAAGCC 35190 37 100.0 35 ..................................... CCCTGAAAACCTACAGAAACTGGATGCCCGTAGGC 35118 37 100.0 42 ..................................... AGCTTCGCCGAGAGCAGCAGCCCGGCAAAGAGTTCGGCGGAT 35039 37 100.0 37 ..................................... GAAATCTTTGCTAGGCATCAAGCACTGATTCCCACAA 34965 37 100.0 35 ..................................... TTCGCGGACAAAAGAATAGACGATTCCACTTGGCT 34893 37 100.0 34 ..................................... GATATACTGTGGACAGCCTACCGCGAGCAAAAAG 34822 37 100.0 33 ..................................... ATCTGGTGCATGGTGCCTGGCGCTCGCGCCTTC 34752 37 100.0 34 ..................................... GCCGATGGAATAACGGAATCAAAGAGTTGCGCGA 34681 37 100.0 33 ..................................... TTGCCGGAACCCATGCCGGCATCCAGGACATGC 34611 37 100.0 34 ..................................... TCTTCCTCAGAGGAAGGACAAAGACCTTTTCCCT 34540 37 100.0 38 ..................................... CTCCTTCCCCTTTTCCTTGGGAGGGGTGAGATACTTGG 34465 37 100.0 34 ..................................... CGGGTGCCCGTGCTGCCTGCGTGCATCTGGGAGA 34394 37 100.0 41 ..................................... AGGTGGGCAAGGCATCGTCGTTTGCTCCTATTGTATGGGTA 34316 37 100.0 40 ..................................... GGTTCCTCAGCGACTGTAAAGGTTGCCATCCCATCATCGC 34239 37 100.0 35 ..................................... TTTCTAGAGCTAGCGATCGCTCCCCACTACTCGGA 34167 37 100.0 38 ..................................... CCAACACCCGCCCCAGCCAACACTACGGCGCTGGCAGC 34092 37 100.0 34 ..................................... ACGTCCCACGGTGGCGAACTCCCAACCCTCTTCG 34021 37 100.0 36 ..................................... CTCTCTGGTCGGAGAAATAGCGATCGCTGCTCAGAT 33948 37 100.0 34 ..................................... GCCGGGTGTGGCTCGAAGCTCCAGCAAATATCTC 33877 37 100.0 37 ..................................... CTGTGCAGTATTCTCCCATCGAAGAAATCTGCACAGA 33803 37 100.0 34 ..................................... CCAAGATAATGGCTCGGAGATCGAGGAGAGGCTT 33732 37 100.0 41 ..................................... GGACTGTGTCCAGATCTCTGTGCAGGAAAAGTCTCGGAGGG 33654 37 100.0 34 ..................................... CCGGTAGCGCAACAGAATACCGCCCCAGACCAGA 33583 37 100.0 36 ..................................... TCCGACATCTCTTTTTCACAAGCCTGAAACCCCAGC 33510 37 100.0 38 ..................................... TTTCTTCTACCGAGCGCAGCTATCGCCAGATCCCGGCG 33435 37 100.0 37 ..................................... TCGCGATCGCTTCATCTCCCACCGCTGACCATGTTTG 33361 37 100.0 33 ..................................... TCTACCAACAACTCGCCTCGAAGAAACCTCGTC 33291 37 100.0 37 ..................................... CGCGAAGCGTGCCGGATGGCATCTCGCTCTGCAATGC 33217 37 100.0 34 ..................................... TGTATTCTAGGGGGAACTAAACGCGATCGCAAGT 33146 37 100.0 44 ..................................... CTTGCAGACCGAGAGTATTGCCTCTTGGCAATGCCGAAACTCGT 33065 37 100.0 35 ..................................... TTGATCCTTCCCGGCTCGTGGCGCATCCGGTGGAT 32993 37 100.0 35 ..................................... TTTTAGAGAGAGCGATCGCACCTACTCATCGGAGA 32921 37 100.0 34 ..................................... TTCGGGGATCAGGGATTCTTCCTTGGGCTGAGGA 32850 37 100.0 37 ..................................... TTTCTTTTTGGAGCGATCGCCCCTTATCTCCGGAGCG 32776 37 100.0 36 ..................................... GAAGACACTCTGGCGATCAACCGCGATCGCTGGCTG 32703 37 100.0 32 ..................................... TCTGGCTGCTTTTCGCATGGAGCGATCGCGCT 32634 37 100.0 33 ..................................... GCGATCGCTGGCTGGCGATGATGAGGCGATCGC 32564 37 100.0 34 ..................................... GGCGGTGTGTAGCGCGATCGCACGCGCGATCTCG 32493 37 100.0 33 ..................................... ATTACATGTCGCAGTATCTGTCTGCGTCAAGCA 32423 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 63 37 100.0 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : TATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTAAGTTTGTAGCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCGATCGCGCCCCACTTGCGAGCGCCGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCAAGCGCACCTAACCCCTTACCGATTTCCTCGCC # Right flank : AGAGAGACCGATTCCCCTCGGAGATGCAATACTNNNNNNNNNNTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTCGTCGTAGTCGAAGGGCACCGCTGGGTAGGAGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTATCTTGGCGAAGACACGTTAGAACGGATCGAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTGTTCGCCGCAGATGTGGGTGCGAATGCCTCCGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTCACGCTGGTCAAATCCAAGAGCGCACTCTACGATCTCACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAGGCAGCCACCGCAACAGGCACAGCAACTCTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCGGCACCCGTGGGCAGAAGAAGATCTCCGGCTGGGTTGAAATCAACTAAAATCCCTATCAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //