Array 1 242320-243669 **** Predicted by CRISPRDetect 2.4 *** >NZ_VATU01000001.1 Escherichia sp. E4385 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 242320 28 100.0 32 ............................ GTCGCAATAATTGATATTGTTATTTTTCCAAT 242380 28 100.0 32 ............................ GGCAGTTCGGGAACAACTGGCGGCGGGAGTGC 242440 28 100.0 32 ............................ ATTTTGAATTATTCCTCTCAATGCCGTTTTAA 242500 28 100.0 32 ............................ GAGCAGGCGCTCAAATAGCGCGACACCACCCA 242560 28 100.0 32 ............................ ACGAGGAAACGAATATGAACGGCGCTTTTACT 242620 28 100.0 32 ............................ TGTTCCAGCGTGTTAATTCCGTTTTCGTGAAA 242680 28 100.0 32 ............................ CGTTAAATCGGAACTATTAGCAGAATTACAGC 242740 28 100.0 32 ............................ GCTGCTGTATTGTTAATGACAATATTTACAGG 242800 28 100.0 33 ............................ GACTGAATCCGCGTCGGTTGCCTCAGCGATCAC 242861 28 100.0 32 ............................ TGGCGGCGACGGACTACAACCGCCGCAACTCT 242921 28 100.0 32 ............................ GAATAAACTTCTTCCAGTTTGGCCTGGTCAGT 242981 28 100.0 32 ............................ GCGTAGCCCGTGGCTTTTTTCATATGTGCGCC 243041 28 100.0 32 ............................ AGTTTATTGGCCTCGTCCCGCGCCTCCTGAGA 243101 28 100.0 32 ............................ AGAATGGCAAGGATGCTATCGATAAATTTAGC 243161 28 100.0 32 ............................ ACAAGCCGGGCATTTAAGGGCGTTGTCGCTAA 243221 28 100.0 32 ............................ CCCCTGTGTGCCCATGAACACCCACACGACAC 243281 28 100.0 32 ............................ GGATCAATCCAGATGTCGTCAGGGAACTCAGC 243341 28 100.0 32 ............................ ACCTGGCTTGCTGCGCGTAATTCAGTACAAAC 243401 28 100.0 32 ............................ GCGCGGCTTCACGAGATATCGACGCGCAATCA 243461 28 100.0 32 ............................ ATCATAATAGACGGTAAAATTAATGCGTTATT 243521 28 100.0 32 ............................ GGTAGTTTCTGTCCCGGAGCTGGCTGCTGCCG 243581 28 96.4 32 ...........C................ TGTTGAGCAATGTAATCGGGGTCAGATACATC 243641 28 89.3 0 ..........C.........T...C... | C [243664] ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTTATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCGATGGGCGCGCGTCCGATGGCACGTGTGATTCAGGATAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGTGGCCAGGTGACAGTCGCGCTGGATAAAGATAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGAGGTTACGGACTTTTTGTTTATGGGGTGGGGGAAGTTCGGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCCGCAACGTGCAATAACAATTGTGATAATTGCGATAGAAATCAATTTCTCGCACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCCAATTACCTTACTCCATCTGACCTCAAGACCATTCTCCACTCTAAACGCGCCAATATTTATTATCTGGAAAAATGTCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATATTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTAACTCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 258117-260006 **** Predicted by CRISPRDetect 2.4 *** >NZ_VATU01000001.1 Escherichia sp. E4385 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 258117 28 100.0 32 ............................ GTGTATCCGTCGGGAATACCGCGCGTTTTCGC 258177 28 100.0 32 ............................ GATAAGTTGTGCCGGCCTTAAACACGTCTTTG 258237 28 100.0 32 ............................ TGAATTTAAGCAGACTCGCCAAAATTATCTGG 258297 28 100.0 32 ............................ CCGGCGAGCAAAAGATCGCCGTATTAGTCAAA 258357 28 100.0 32 ............................ CGAATCCAACGGACGGCCTGACCAGTTCCGCA 258417 28 100.0 32 ............................ AACGCGACAAACAAAAATTTCACCCTGGCTAC 258477 28 100.0 32 ............................ GCAGCGCGTCGATATATTCCTCGCTAATCAGT 258537 28 100.0 32 ............................ CAGTTCCGACCCGCACGATCACGTAACGGCAT 258597 28 100.0 32 ............................ AGAAAAAACGGTAGCGGAGCTGGTGGACACTA 258657 28 100.0 32 ............................ TCGTTGCGTGTGTACTCACGGTGATGGCAATG 258717 28 100.0 32 ............................ CGCCCGCCCCATTTTGCAGCGCCCTTTATTTT 258777 28 100.0 33 ............................ GCAGCGAGGAAAAATCGGAATGAGCACAACAAT 258838 28 100.0 32 ............................ TGTACTGTGTTTGTCTCTTCAATCGCGAGAGC 258898 28 100.0 32 ............................ TGGCCGATTAATCGCAATTTCTGTTAATCCTG 258958 28 100.0 32 ............................ GCAGCGGCGGCCATCACGTCATCAACCACGCT 259018 28 100.0 32 ............................ CACAATATTAAAATAATCCACATAAGGAATAT 259078 28 100.0 32 ............................ TCGAGCGGTATTTTTGGCAGCAGGCCCCTTGT 259138 28 100.0 32 ............................ AGCAGGGCCAGTTCCTCGTCGGACACGGTAGT 259198 28 100.0 32 ............................ GAGATATGCACCTCTGGCAGCAACGACGTAAA 259258 28 100.0 32 ............................ AAAAGGTGCAGGCGCTCGCCGCGCGGCGCATG 259318 28 100.0 33 ............................ AGGATAACTGGATTCGGTGCCGGTATTCGTCGT 259379 28 100.0 32 ............................ GTATGGACTACGGGACGGCTACGGGCGCTAAC 259439 28 100.0 32 ............................ GTTTTCGGCGTCATTGCAATCTGGCCCACGGT 259499 28 100.0 32 ............................ CCGTCCTGGGTGCACATCAGGCGCACCTCGTT 259559 28 100.0 32 ............................ GACGAACGCGGCACACCAGGGTGTCTCGTCGT 259619 28 100.0 32 ............................ AGAAAGCGGCTGCTGGTATTGCTGGAGCAATG 259679 28 100.0 32 ............................ ATGCCGCCCAGTTCGGCTCCCGAGGTCGTACA 259739 28 100.0 32 ............................ TGTCACGATTAAAGTTAAAAACGTACAGTATA 259799 28 100.0 32 ............................ CAATAGCTAACAACGCAAACACAACCGCTATA 259859 28 100.0 32 ............................ GATACGCTCAAGGTCAATGCGCGGGCGGCGGA 259919 28 100.0 32 ............................ GCAGTCGGGGCGTATTTCCGCGTTAGCGGGTC 259979 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCACCCCGCTAGGACGGGTCACATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTCAGAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATGGATTGATTCGTTTGGTTACGCAATGAACATACTGTTCGCGCCCGGAGATTTTGACCGTATGTGTTCTGGTCAATTGTTTATCAAAATCTATGCATAAAATATGAGATTGAAGAAGTACCAAATAGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTTTTTTGATGTCTGGAAAAAGGGTTTAAATCTGCGACTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCAG # Right flank : ACACAACACTCCATCCTCCAATATTTATTCCCCGTAACTCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //