Array 1 1678-89 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFO01000140.1 Pseudomonas aeruginosa strain TUM17826 sequence140, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1677 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 1617 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 1557 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 1497 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 1437 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 1377 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 1317 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 1257 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 1197 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 1137 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 1077 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 1017 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 957 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 897 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 837 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 777 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 717 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 656 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 596 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 536 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 476 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 416 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 356 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 296 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 236 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 176 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 116 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 60143-59215 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFO01000005.1 Pseudomonas aeruginosa strain TUM17826 sequence005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 60142 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 60082 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 60022 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 59962 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 59902 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 59842 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 59782 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 59722 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 59662 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 59602 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 59542 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 59482 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 59422 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 59362 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 59302 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 59242 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9801-8456 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFO01000053.1 Pseudomonas aeruginosa strain TUM17826 sequence053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9800 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 9740 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 9680 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 9620 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 9560 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 9500 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 9440 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 9380 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 9319 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 9259 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 9199 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 9139 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 9079 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 9019 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 8959 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 8903 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 8843 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 8783 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 8723 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 8663 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 8603 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 8543 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 8483 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //