Array 1 109022-108017 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZM01000088.1 Gluconobacter thailandicus strain LMG 1741 LMG1741_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109021 29 100.0 32 ............................. ACCGAACACCGGTGAGGTCAAGGACGTGGAGA 108960 29 100.0 32 ............................. GCGTTCGGCTATCCCAGATAACTTTTCTTCTA 108899 29 100.0 32 ............................. GATCGTGCTTTAGTATTGCTCGTCCTATGCAA 108838 29 100.0 32 ............................. CCGCTCGCACGATCGATGCCCAGGCCGCCAAG 108777 29 100.0 32 ............................. CTGGTCTACTCTGCTGCCGTCAGTCGCCAGCG 108716 29 100.0 32 ............................. TCCCAGCCAAACTGGTAGTTGAATACGTTGCA 108655 29 100.0 32 ............................. TCCCGGCCGCTTATCTGCCCATTCTGGAAGGG 108594 29 100.0 32 ............................. AACTTGCAGGCTCGCAGCAGAGCGCGATCGGT 108533 29 100.0 32 ............................. ATGCTGTCCGAAACGTCAATGTTGCCTCCAAC 108472 29 100.0 32 ............................. ACGATCTGTCAGCGCTGCAATCTCACCGTCGC 108411 29 100.0 32 ............................. TGTATCCGGCACTAAGCTCTCGCTTGCCGTTC 108350 29 100.0 32 ............................. GCTATTTCGAGGCCCTGCCCGCTTCAGAGCGT 108289 29 100.0 32 ............................. GCAAACGTCGGGGATTATCTTGCGCCGCTCTA 108228 29 100.0 32 ............................. GAATAGCCAAGGGCGCGAGAACGGCCTGAGCC 108167 29 100.0 32 ............................. TGGTCCCGCACCTCCTGGCAGATGCCACGATG 108106 29 100.0 32 ............................. TCCGGCCCACTTGCTCGTCGCTTCCGGGGGCT 108045 29 89.7 0 .......................A..T.T | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CGCCTCGTCCCCATGATCGAAGATGTTCTCTCCGCAGGAGGCCTGTCACCCCCTGAAGCACCGGAAGAGGCCATGCCCGTGGCCTTTGAAGACCCGGAAGGATTGGCCGATGCTGGTCATCGTGGTTGAAAACGCCCCACCACGACTGCGAGGGCGGCTCGCCGTCTGGCTGCTGGAGATCCGCGCAGGAGTATATGTCGGTACCTATGGCCGAAAAGTACGCGAGATGATCTGGCAGCAGGTCTGCGCCTATATTGAACAGGGAAACGCTGTCATCGCATGGGCTGCTCCCAATGACGCAGGCTTCGAGTTCGACACCTGCGGCGCCAACAGACGATGCCCCGTGGACCTTGATGGATTTCGTCTGGTCGAGTTCGGTCCAGAAGCTGCCCTCCCCCTCCTGCCCGGCCCCCTCAATTCACCACGAAACCGACGCTGAAAAATCGGTAGCTTTTTGAAGTGGAAGATTTGCACCCATAATCATATACTTACAAACAAGG # Right flank : TTACCGTCAGGCGTCTGAGCCCTGCACAACCGCACTCATTCTCCCCACATTCTTGCACACAAGGAGACAGATCATGAGCAAGCTCAGTAAAGAGGAACGGGACAGCCTGCCTGACAGTGAATTCGGGCTTCCTGAAAAACGGGCCTATCCCGTCGATACAAAGGCCAGGGCCCGGAATGCAAAAGCTCGTGCCACGCAGGAGCTGGAACGGGGGCTGCTGACACAGGAAGAACGGGATGAGATTGACCGGGCAGCAGATCGTAAACTGAACGAAGACTAAGCCAGAATCAGAAACGGCCCCGGATCACTCCGAGGCCGTTTCATCATTCAATTCCGCAGTCAGTGAGCCTGTGCTGCCCGCAATGGAGCATCTGCCGGAACATCCTTGAGCGGGATTCCCTGATACTTACCCGTCAGGGTTTTCAGGAACGCAACGATGTCTGCAACATCCTGATCACTGATATCATGATCGGGCGTTTCGTAACGCGCCATGGCACGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183335-182813 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZM01000088.1 Gluconobacter thailandicus strain LMG 1741 LMG1741_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 183334 29 100.0 32 ............................. GCCTTTTCCTCCGCTTTCTGGGCGGGCCGGGG 183273 29 100.0 32 ............................. AATCAACATTTCCTTCGCCCCAGTTATAGGCC 183212 29 100.0 32 ............................. AAATTCCTGTTCAGTCATCGTTTACCAACCTG 183151 29 100.0 32 ............................. TTGTAACGACGCTGCGGAAACTTGATGTAAGC 183090 29 100.0 32 ............................. CCCTTAGGGCCTTCGAGAACCAGCATGGAGTC 183029 29 100.0 32 ............................. ATGATGCCTGCCGCATGGATGCCCACCTGACG 182968 29 93.1 32 ...........G..A.............. TAGTCCCGTACTTCCTGGCACATGTGGAGGTG T [182942] 182906 29 82.8 35 .............AG.......C...GG. ACTACTGGTGGCCGCAACTTCGATCTCGCCAAATA 182842 29 72.4 0 ..CC..G....T..G...T....CT.... | T [182833] ========== ====== ====== ====== ============================= =================================== ================== 9 29 94.3 32 GTGTTCCCCGCATGTGCGGGGATGAACCG # Left flank : TCGGGAACTGCGCGTTCCGTTCCGGACGGCTCATCATGTCACGGGGCGTCTGGTCGGACTGGCCGAGCAGCGCGGTTGTGATCTGGCGGATCTGTCCCTTGAGGACATGCAGGCCGTGGAGCCGGGGATCAATGCTGGTATTTTCGATGTTCTGACGGTTGAATCCTCACTGGCTTCCCGCACCAGTCTGGGTGGAACTGCTCCGTCCAACGTGCGCCAGCAGGCTCAGGCCTGGCTGGAGAAACTTGGAGACGCTGCATGAAACGTTTTCTGCTTGTTGGCCTGACCCTCGTAGCGCTCAGCACTGGCCTGAGCGCCTGCGGGAAGAAAGGGGCTCCACACGCACCCGGCCCTGCTTCCGACATCACATATCCCCGGAGTTATCCGCCTGAATAACGGGCTTTCAGATAAGTCTTACAGGGGCCGAAAACAGGCCATAAAAATCGGTAGATTTTTGAGGGTGGAATTTTCCCTTTTCTGTCAGTACCTTGCCAGGAAGA # Right flank : GAAGAAGCGATTCCACTTTCTTCAGCCTCAGCGTTTTTCTGAAAACTTTACAGATGCAACAGCCGCCATCAGCTGTCCGCCAGAGCCTTGACTACCAGCGGGTGTGTCAGAACGTCCTCTGCAGGCCAGCCCATCGCCCTGAGCGCTCGAACCCCTTCTGCACCATCCCTTTTGGAAAGCTTCTTTCCGCTCTCATCCAGAATAAGAGCGTGATGCCTGTACTCAGGTTCAGGCCATTTCATCAGGGTCTGAATTACACGATGAATGGATGTCGCAGTGTAAAGGTCCTGCCCTCTCGTGATGCAGGTCACGCCCTGAAGGGCATCATCGTGGGTGACGCACAGATGATAAGACACGCCCGTATCTCTGCGTCCCAGAACAATATCACCAAATCCATCCGCACGCCCCGCAATCCGACCATGACCCGCTTCATACCAGGACGGCACACCGTGAATTTCGTTCAGAGCACGCTGCATATCGAGCCGCCATGCCGGTGCACG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //