Array 1 2209-2536 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASV01000064.1 Gilliamella apis strain N-G4 NODE_64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2209 28 100.0 32 ............................ TGCGTATTCCCAATAATCGGTATTCGTGATGC 2269 28 100.0 32 ............................ TTGAGGCAGAAACCCCCGATATTAAACTACGT 2329 28 100.0 32 ............................ TGTAGAATATCCCGCGCTGTACAGCTGGGGCT 2389 28 96.4 32 ........C................... ACCAGAATTAGTTGAACCATGTATTCTAAGTT 2449 28 96.4 32 ........C................... AAACAAGAAATTAACAACAATCCAAATTTTAA 2509 28 85.7 0 ...C...AA...G............... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTTACTGTCGTATAGGTAGTTTAGAAA # Left flank : TAGGTATTGAAGCTGAGGATAAGAAAAATAATGTTAGGGCGATAAAAGCAATTTTGTGGTGCGACATTGGCAATGTGCTGACAACAGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACGCAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTATTCACCGTATAGAAACAACCACCAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAATTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAACACATTGAAAAATAGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : ATACACTGCTTATTGAGTAGGTTAAAATGGTGATTTTTTTAAGAGGGGGATAAAGGGTCTATTATTTCTAATAAACAACAAATAACCAATGCTGTTTTCGAGCTATCAGTATTCTTCTTTACAAAAGTTAACAATAAAACCATCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTCATACCGTCGGGCTTGAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAAATTCACCTTTCTAAAGTTAATCTCATATCGTTCATTATTTCACAGTAGTTTATTATTTCAGCAATTTCCCAAATTTCCGAAATTCCGGCAAAATTTTTCAAAATTTCTTAATTTAGTCTGTTTATCCCGGCAGATGGTTTTGGTATTAACCATGGTTGTTTTACAGTCTATC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGTCGTATAGGTAGTTTAGAAA # Alternate repeat : GTTTACTGCCGTATAGGTAGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTTACTACCGTATAGGTAGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4903-5291 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASV01000064.1 Gilliamella apis strain N-G4 NODE_64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4903 28 100.0 33 ............................ CAACCACTTTCCAACTTTATTTTTTGATTTAGA 4964 28 100.0 32 ............................ TCCGCATTACACTTTTCAATAACATTTAATAG 5024 28 100.0 32 ............................ GCCGGCCTTGCGACCCGTTAATAATTGTGACG 5084 28 100.0 32 ............................ CACACGCGATATTATCCCCCTCGTCGGCTGAA 5144 28 100.0 32 ............................ TACTACTATTAAACGGTGTTGTTAATTTATCT 5204 28 92.9 32 ...C...A.................... TAGCGAACAGCGGTTTTTAGCTTCAGATCGAA 5264 28 75.0 0 .......A.........CTTT....TT. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 95.4 32 GTTTACTGCCGTGTAGGTAGCTTAGAAA # Left flank : TTAGATATTAAAGCTGAGGATAAGAAAAATAATGTTAGGGCGATAAAAACGATTTTGTAGTGCGACATTGGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACATGGATGTTTGGCAAGGCTGTGTTTTGTCAGGAACAAATCACAGTCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGACATAACCGCAAAACAACAAACGTCCGAAACTCAAAGAATAAAAAATTTTGAGGAAAGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATTTTTAAAAATCAATATGTTGAAAAACCGCTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : AGTAATTAAAATGGATTTTTAGTATTTAAAACTCGCTGTTCTCAAATTTATCTATGAAATAATTAAAACGCTTATATAAGCGTTTTAACTCTGATTAATATCATTATATCTACTATAAACTATTAGAACATTAATAGTTGTACAATTAAATTGCAGTCATATAGACCTGATTATTCAGTAAGTTTTTAGGATCAAACTGTTGTTTAATTGCACGCATTAATTGGCGATTTGCTTCAGGAATGGCAGCATTGTAATAACTTACTTTCGCCGTTCCGATGCCATGTTCCGCTGAAGGCAATCCTCCTAATTCAAGACATTTTTGATAAAGCGCTTGGTGAACATTTTGCAGATCAGATTGCCATTGTTTGTCATCACGATTATCACGCAAAATGCATAGATGAATGTTACCATCACCAGCATGACCAAAGGCTAACATGCGCATTTGAGTTTGTGCTTCTAGCTGTTTGGTGAAATTGATAAAATCGCTAATGCGATTTATT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTTACTACCGTATAGGTAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 864-1190 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASV01000069.1 Gilliamella apis strain N-G4 NODE_69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 864 28 100.0 32 ............................ ATCGGCATCGAGTATATGAATTAGATTGTTAG 924 28 100.0 32 ............................ ATTTATGCCGGGCAAACGCATTGTTGCTACCA 984 28 100.0 32 ............................ TGCTTTTTTGGATTTCCTTAATTTGCTTTCTA 1044 28 100.0 32 ............................ AATCCGCAGTCCAGCAGTCACCGAAAAATATA 1104 28 100.0 32 ............................ GCACTCTAAACATTGAATTAAATCATATTTAA 1164 27 78.6 0 ........A.........-.GCC.A... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTCACTGCCGTGTAGGTAGTTTATAAA # Left flank : CAGGTTTCTTTTCGGAGTGGGGCGACGTAAAGGGCTACACTGATGCTGGTTTCTATTATGGTTATTGGACTAGCGACCCTGGCCGAGCTAGTAATTATACTGAGTTTGTCGTGTTCACCCATGTTGGCAGTGCATCTAGTGGCTTTATACCCAATGGAGGTGAAAAACATGCAGGAGTTTGTGCCGCAGCCCCTTTAAAGGATGATTAATTCAATAACCAAGCGAATTATGACGTAAATGGCTAAAGCAATGTTATGGCGACAGCCTTCCGCCCCAACTGGGGCGGGGTTATTTTTGAGGATTGGGATTTTTAAGATAAAAAAGTTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTTGACTTAAAATAAATTATTTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTAACAACTGCATTTATAGTATATTCGATTCTA # Right flank : ATCCATACAAACCGCCTTCTGACGGTTTTTTATTGCCCCTAATTCTTAAATAACATACCATTACAAAAAAATTCAAAGGAAATAGCATGAAAAGAATTGCATTATTGGGGTTAACTTGTTTTGCGTTGTTTGGTTGCGGTGAGAAAAAAGTAACCGAAGAGATGCTTCTTGGGGAGTGGAATTGCACAGTTAGCACGCAAAAAGCAGACTCAAAGAAGGGTAAGCTGCAAGATTTCGGTGACCCTGAAGTTGGTGAATATAAATATATCTTCACCAAAAAAGATGGAAAACTTTTTTGGAGTTCATCTTTATTCAAAGAATATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAAAACTGAGTATGTTGTCGATGACATGCAAATATCTCATAAGATTGAATATCTATCCAAAGATAGTTATAGTATTACTAATATATATATAACCATCGATAAAAACAATAAACCAATTAGCAAATCTAAAGATGAATTTGTTTGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7398-7914 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASV01000017.1 Gilliamella apis strain N-G4 NODE_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7398 29 100.0 32 ............................. CCATTTAAATGATGTGCTAGAAACGGGCACAC 7459 29 100.0 32 ............................. ATAGAAACATCATCATAACAGTAGCTGAAAGG 7520 29 100.0 32 ............................. CCGATTATAAACGGCTTGGGATGATTAGAGGA 7581 29 100.0 32 ............................. AATTGGAATTTGATTCATATATAGATGCAAAT 7642 29 100.0 32 ............................. AAAACCTAGTCCCTGCATTTATTATGATGTTG 7703 29 100.0 32 ............................. AATAAAATCGAACAGCTACAGCAAACTATCGA 7764 29 100.0 32 ............................. GCATCATCAAGCATGGTTTGCGTGGCGTATGG 7825 29 100.0 32 ............................. ACTTATCTATGAGTTGTTGAGCTGTGAATTGA 7886 29 82.8 0 .....................C..TTGA. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTCAACGATGATGGTGAACCAACCAGCACAGCCGGCCGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTAGTGGTGGTCACCCGCTACTTTGGTGGCATCAAATTAGGCACAGGTGGACTCATTCGAGCCTACGGTGGTTCGGCTAGTCACTGCTTACAACAAGCAGAATTAATCGAACTTATTGCTAGAACATCATTACAATTTCATTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAGATTTTGATGCTGAAGGTGTAACTGTCATTATTGCTATAACACAAGATAATGTAGTCATACTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGTAAAAAAATTGGTAGAATTTGTAGACTGCGTATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : GTTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCGGGTGGTTTTTTATTGCCCCGAATGCCTAAATAACTTACTATTGCCTAAAAAGGAGATGGCATGAAAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAGGAGATGTTACTTGGTGAGTGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATCATCGATAAAAACAAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20089-19755 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASV01000014.1 Gilliamella apis strain N-G4 NODE_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20088 29 100.0 32 ............................. TACCATAAAATGCTCCAGTAAATTGATATAGA 20027 29 100.0 32 ............................. CTTCTTGCTGTTGTTGAATCTTATTTCTTAGG 19966 29 100.0 32 ............................. GTACAATAATGTCGATACTTGAATCGCTGGGT 19905 29 100.0 32 ............................. CATCACCATATACCACACCCTAAAACCTAAGC 19844 29 100.0 32 ............................. CAATCATTGGCGTCTTTGCATCCTTTTGGCTA 19783 29 89.7 0 ..............T.........C...T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : CAATTAGGACAAAGTTCACAAGCTAAAAGTATTATATTGAATTTTAATAAATGCTATAGCCGTGAACAGTTCAATGGTGAATGGGATAAGGAAATTGAAGTTTCTACCCGTTTATCAAAAGATAATATTGATCTTTATTTAGCATATCAACAAGATGGAAAAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATGTTACAATTAGTGCATCTAAATGGGCTAGAGTTAAAAAAGCCGTCCCACAACTTGACGAACAGCATCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTTCTTATTGAAAAAGAGTCTTCTTTTTATTCTAAGGAATTAGGCTTTTATCTAAATTAATTTAAAGTTAAATATTAATAATTTTAACTTGCAATAAGTTGAGTGAATTTCATACAGAAAAAATCGGTAAAAAATTACTCCCTTATATTTCAATTATAAAACAAATGGTTATAATTAGG # Right flank : TATTACTGGCTAATTCGTTAAAACTGCCTGGCTAGATTTGGGTGAGGATGGAATACTTTGATCATCTGCAAAAATCAGTAGTTCGCCGTCGCTATATCTAACGTTTTATGATTGATGGTGAGGTTAAGCCAATGTTAGCTGTATTAGAGTATTTAAATGAACATAAAATAAAACCCAACCGCCGACACGTTGGGTAGGCTGCGCGTGGGATTGGAGGTCCTGTCGGAGACTGCCCGCGAATACCTTTTAAATAGTATAGGTAAAAAAATGATTGGCGTAAATATTGAATTCAATGTACAAGACGCACTAATCAACATAGAATTTGCTTTGCTCGATACACATGGTTTATTCAATCATATAAGTGGAACATTACTTGATATTTATGAAGCACGCTTTAATGCACAGGAATCACCAGATGGTATAACACCATGGCAAGCATTATCACCATGGTATCAAGAAAGTAAGCCAAAACAAAAAAATAAAATCTTAACGCTCGATAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 37811-39364 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASV01000014.1 Gilliamella apis strain N-G4 NODE_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37811 29 100.0 32 ............................. CAACACCTCACCAATATGATTAAATAATCCTT 37872 29 100.0 32 ............................. TTATTTACCGCAAGTGGATAACATAGTGATCT 37933 29 100.0 32 ............................. CGCAGCGATTCGCTGATATGTTGCTAGATCCA 37994 29 100.0 32 ............................. CTCTCCAGTATCAACAACATCAACAGTTGAAA 38055 29 100.0 32 ............................. CTCTAGCACCCTGCCGAATTGACGCACGGAAT 38116 29 100.0 32 ............................. ATTTAGGAACTGGAATAAAAAATAGCATCGTT 38177 29 100.0 32 ............................. CCGTCATACTCGGCCTTTAAGTCACCGTTTTT 38238 29 100.0 32 ............................. AATCATTTTAACGAATTCCTCAGATGACATTT 38299 29 100.0 32 ............................. CGAGGGCTTAATAATTATTTTGAAACAAAATC 38360 29 100.0 32 ............................. ATATTTTCGCTTTATTATCTTTCTGTTTTCAG 38421 29 100.0 32 ............................. AAACGATAAAGACGATTCTAACGAAATACAAA 38482 29 100.0 32 ............................. ACCCAATAAAGATAAAGAAAGCTCAGAAATTA 38543 29 100.0 32 ............................. CAGTCGAGGAACGTTATGTGAATTAAAAGTAG 38604 29 100.0 32 ............................. TTCCTCACGCTCAAATCGTAATTTAGACGGGG 38665 29 100.0 32 ............................. AAAATGGTACATGCGAATTTAATAATTTTTTC 38726 29 100.0 32 ............................. AGCGCTCTGAAATTTCGCATTGTTCGGCTATA 38787 29 100.0 32 ............................. TAATCGACTAGCGCCTTCTCGTCTCAAGTCAT 38848 29 100.0 32 ............................. ATACAACACCAGTTGTAGAGGTAATGGAATTT 38909 29 100.0 32 ............................. AGACATTAACGGGAATAACTCAGTAACTTGAC 38970 29 100.0 32 ............................. TTTTTAGAAACCGACGAATTTAAGTTAAGTTG 39031 29 100.0 32 ............................. AAAGCGATAGAAAACATAGGTACAGCAGCTGC 39092 29 100.0 32 ............................. CGCTAACGCAATATTTTCAATTGACCAATCTT 39153 29 100.0 32 ............................. AACAACCACCGGTTAATTCATCTCAACAACAA 39214 29 100.0 32 ............................. GCAGCGGCCGAACGCAAGTAATTAGAATGATA 39275 29 100.0 32 ............................. AGCAATAAAGATTAATAAAACATTAATGGAGA 39336 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTGTCTGCTGGTGGTATTGAACCGCCACCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCTCCAAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAAATATCTATATTTAGA # Right flank : TTTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTTAATATTTTTTACAAGGCTGTAATGATAGCGTTTTATAAAAATAAAAACTAATAATCATATATATCGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAACATTAATCATCAATTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCTGGCAAAACAACAGCCATCAATACTGTTGCACGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACCCGCGAACCTGGCGGTACTCCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACTGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 348-615 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASV01000028.1 Gilliamella apis strain N-G4 NODE_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 348 28 100.0 32 ............................ AAAGCTTGATAAGAGATTCGCCAGTGCAATAT 408 28 100.0 32 ............................ CCTAGCATATATTGTGATGCTAATCCTGCCCC 468 28 100.0 32 ............................ AATAGCCAGATAAATTAGCCTTCAATTGCTCT 528 28 100.0 32 ............................ AAGCCTTTTAAAGATGCAATCAAATGGATAAA 588 28 78.6 0 .................CG....TTTT. | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.7 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : CGGTGCGTTAAGACCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTATTCACCGTATAGAAACAACCGCAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAATTGAGGAAAGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTAATCCTTTTTTTTTACTTAAAATAAAGTATTTAAAAATCAATATGTTGAAAAACCGCTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTAG # Right flank : ATGCCTGTCATTCGACCACTCAGCAGATGAAGTAACCAAACTTTTACAAAGAGCTAAAATTATCATTGATGTACAAAAAAGCAACGATAAGCTACGTAAAAATTGTAGGTAAGGATTATTTTAAAGATGATTATGAGAATGATTGAATTAATAACTTTTATTGCACTTGGCTAACAAATTTTATATTATCTATCAAAATTATTTATAGGAGAATGGGGTGAAAAAATTATTATTATTAACGTGTTTAGGTTTTGTTTTCTCTGGTTGTAGTGTTCATCATCAATTTAATGATAGGTTGTCTTATCAATCATTAAAGCAAATAAAATCAGAGATACATATTACTAAAAAACAAAGCTTAGATATTACATGGATCCCTAGTGATTTTACGTCACGAATTGATATACAAGGGGCCTCAGGATTTGTTGGTGGTGGGACTCGTACTAGAATTCCGATTGGAATAGGTCTTTCATCAAGAATTGAAGAAGCAATTAGCACGTACG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 86677-85509 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASV01000003.1 Gilliamella apis strain N-G4 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 86676 28 100.0 32 ............................ CAAGTCGTGACATGTTAGCAGAATATGTACGA 86616 28 100.0 32 ............................ TTGAGGCAGAAACCCCCGATATTAAACTACGT 86556 28 100.0 32 ............................ ATAATAGCTCGCTGACTGCGATTCATAGCGTC 86496 28 100.0 32 ............................ TCTAACATGTATACGAGAAATTAGCTAATTTT 86436 28 100.0 32 ............................ TGGTCGCATAACACGACCCGCTAACGCAGTCC 86376 28 100.0 32 ............................ ATCGCAAAACTTCGCTCGTTGTGATGTATTTT 86316 28 100.0 32 ............................ AACTTAAGGGAAACACCCCGCTAGCCAAAGAA 86256 28 100.0 32 ............................ TTTAAGAGCCACGACATCGACATCTGTGCTGA 86196 28 100.0 32 ............................ TTGAACGAGAACTCACAACCACAATAGAATGT 86136 28 100.0 32 ............................ ATTTTATCAACTAATCTGGCTCGATAGAAAAA 86076 28 100.0 32 ............................ TAACGAAATAGTATCCAACAAACCAATATCAA 86016 28 100.0 32 ............................ TCAATCAAAATACGTCTAGAACGCATATACGG 85956 28 100.0 32 ............................ AAAAGAAAATCGTTTACAAAAAATCTTAAAAA 85896 28 100.0 32 ............................ ACCATGCCCCGTGATTGGGTGCAAGAATTTTA 85836 28 100.0 32 ............................ AACAAACTGGACGCATTTTACTAATAAAGAAT 85776 28 100.0 32 ............................ ACCTTCACAGACCCAATGATTATGAACATAAT 85716 28 100.0 32 ............................ GATAGGTGCAGGGGATGGGTTTATAAATTGGC 85656 28 100.0 32 ............................ TCTAGTGAATTTTTCGAGATAAATAACTCTAT 85596 28 96.4 32 ....................C....... TCTAATCAAACGTTAAAAAATGGCGGTAAAAT 85536 28 82.1 0 ...........CG...A...A...A... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.9 32 GTTCACTGCCGTATAGGTAGTTTAGAAA # Left flank : TAATAAAAGTTTATTTTTATCAATCAGTTTGATGCTTCTCATTTAGCGACATCCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTAGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGGCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTCAAAGAACTAAAAAATAAAGAACTAAAAAATTTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACATAAAATAAAATAATTAAAAATCAATATATTAAAAAATCACTTAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTGCCAACTGCATTTATAGTATATTCGATTCTA # Right flank : TTAGCAAAAATTAATAGGTCCGAAATCCACCAAACTAAAAAAGTTTAGCAAAGGAGTTTTTTAGGTGAATAAATTCATCACATGTTATAATTATGTTTAATTATAATTAACTCTGTAAATATGATGAATAATAGTACAATTGATAACCAATTAAATGAAAAAATGGTGCTTATTTTCAAAGCATTATCTGATCCGGTTAGAATAGAAATCATTAAATATTTAAAAAGTATAGAAACAGAGGTTATCTGTGGTGAAATAGGTCAAGCGGTTGGTATTAGTAAACCTTCAGGAACTTATCATTTTAGGTTATTACAACAAGCAGAATTAATTAACGTAAGAAAGAGTGCTAGGGAAAAATACGTATGGCTTAATAAATCAACATTTGATAAATATGTTACAGGCTTTTTTGATAGTCTTTAATATATTTAAATGTTGATTTAATCTTGAGTTTACTACTGGTGGTTAATTAACTATAATTTGCGCCTTTTCGTTAATTTGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 92520-92071 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASV01000003.1 Gilliamella apis strain N-G4 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 92519 28 100.0 32 ............................ TAGAGAAAAAACTTCGGGGTCGGGTTGAGTTA 92459 28 100.0 32 ............................ GACCGAAAACATTGCAGCCGCTCAACTCGATA 92399 28 100.0 32 ............................ CTGATCTGAATCCCAACTTGTAAAACTGTAAC 92339 28 100.0 32 ............................ ATCAATGTACATAGCGGCTTGGACGTGATAAC 92279 28 100.0 32 ............................ AGAAACGCCATTTAACATACGAGTTGTTAGAA 92219 28 100.0 32 ............................ GCTCAGAAACGGACTTGTCTCATTTAGCTTTG 92159 28 100.0 32 ............................ TTGATATTAACACTGTCGAGCAACACACTTCA 92099 28 85.7 0 .......G....A.........A.A... | T [92074] ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.2 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : TTAGCTAAGGAAGCAGGCTGACAAAGTGTGCGATAAAAAGTGATTTTGTGGCGCGACATTAGCAAAGTGTTGACTCTCGAGAAAGATTAGTATGATAAACAGGCAAACAGGGGAGTTTGACAAGGCTGTAGTTTGTTAAGGAACAAATCAAACCGATGCGTTAAGAGCGAACGAAGACGGAAGGTAGTTACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATGGTAAAGAGGGTTCTCGCCAACCCTCTTTACTCGGACGTAATCGCCGAATAGAAATAACCGCAAAACAGCAAACGACCGAAACTCAAACAACCAAAAAAATTTGAGGAAAGGGGGTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTGAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTGCCAACTGCATTTATAGTATATCGGATTCTA # Right flank : AATTCACACAAACCGCGTAATGGCTTTTTTATTGCTCAAATTTCTTTAATAACATACCATTATAAAAAAATTAAAAGAGATAGTATGAAAAGGATAATTTCAATTTTTTAGTCGGAGTAGCTTTATTTGGCTGTAGCGAGAAGAAAGTCACAGAAGATCTTGACGCAATCGTCGATATGAATTTCGAATTAGCTGATGACGTCGCTACTAATGATAAACTATAAGCCCGCATTGCGAGTTAAAATCGTTTAATATTGCTAATCATCAGCCCATCGCATATATTACATAAAATATTTTACTTCTCTAAAAAGAATAGTCATGACACAAAATATCGATTTAAACGAAATAGATAAGTTTGCAAAACTTGCTTCGCAATGGTGGGATCCCAATGGTCAATGCAAACCATTGCATATTATTAATCCTTTACGAGTAGATTATATAAAACAACAATCCGGTGATCTAAACGGAAAAAATGTATTAGATGTTGGTTGTGGCGGTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //