Array 1 431610-434323 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134524.1 Peptoniphilus harei strain NCTC13077 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 431610 29 100.0 32 ............................. ATGACGACATCGAGTTTATACCAGGAGAAAAA 431671 29 100.0 32 ............................. AAATTTGCACCAGTCGGAAGACCTAATCAACA 431732 29 100.0 32 ............................. AGAGACGGCTACAAGTTGATAAAAATCGCTGA 431793 29 100.0 32 ............................. TGCTTTTCGTAGTCATCTGGATAGTAATAAAA 431854 29 100.0 32 ............................. CTGGAGAGAGGCAGTCCTTGAAGATTTAAAGG 431915 29 100.0 32 ............................. AGCAATCCTTTTTATCTTTTTGTGATAAGTCG 431976 29 100.0 32 ............................. TAACATAAACAACCTCACTAAAATTTTATTTG 432037 29 96.6 32 ............................C TATAGACTGGATAAATTTTTCTTCGGTAAGTT 432098 29 100.0 32 ............................. AAGGGAGGACTAAGCCTCCCAAATTATTATGC 432159 29 100.0 32 ............................. TGAGTACTTCGGATTAGAAGAAGAATTTGAAA 432220 29 96.6 32 ............................G GATAGGTTTGTAATATTTTTTTTCGGCAGCTT 432281 29 96.6 32 ............................C AATGAAGCATTTGGAAATTACATGAGCAACAA 432342 29 96.6 32 ............................C AACTCATCTGGAATTAAGGGTGTACAGTTAGC 432403 29 100.0 32 ............................. CGGTCTGCAACTTGGCAATCTCGACTTTTAGC 432464 29 100.0 32 ............................. GAAATTTACACACTTGAATTTCAAATTGATGG 432525 29 96.6 32 ............................C TCTGCCACGGAGTGGGCCAGTGTTTCCTCTTT 432586 29 96.6 32 ............................C TGCAGGGGATAAGATCCCTGATGATGTAATCA 432647 29 100.0 33 ............................. GATTGAACTTGATAAGAAAAAATTTAAAACTAA 432709 29 100.0 32 ............................. GCTTAATTCCCAATCTAGAATTGAGTCTAGTC 432770 29 100.0 32 ............................. GCTTAATTCCCAATCTAGAATTGAGTCTAGTC 432831 29 100.0 32 ............................. GGACATAATCGTGGTAGTTGCAAATGTTGAGA 432892 29 100.0 32 ............................. CTACAATGCTCTCCCTCTTTTAAGTCATCTGA 432953 29 100.0 32 ............................. ATGGTAATTTTACAGTTGAATATAATGCTAAA 433014 29 100.0 32 ............................. CTACTTCTGAACATTATTGGGATATGGTTATG 433075 29 100.0 32 ............................. AGGAACAGCTACAACTGGTAAAGCATAAACTT 433136 29 89.7 32 ..............T..A..........C TTGTTGTGGCTCTCCAGCGACCTCGCCCTTAA 433197 29 93.1 32 ..............T..A........... GATATAAAGGTTAATTTAAAGAATTTATCTAA 433258 29 96.6 32 ..............C.............. TAGCAATAATAAGACCAATTGCTACTGCTGCG 433319 29 93.1 32 ..............C..A........... GAATTGCCCAACATGTAATCAGCCACTGCCAG 433380 29 82.8 32 ..............C..A........GGA GAAGTAATAAGAGTCCCAGGAGCTGTTTCAAG 433441 29 93.1 32 ..............C..A........... GCACCAGATGTAGTATTAATTGATTATAAAGG 433502 29 89.7 32 ............T.T..A........... AGATTATAAAGGCAATAAAAAATTTATAGAGA 433563 29 89.7 32 ............T.T..A........... CATATTAAAGGTGTAGAAAATCAAACTCTTGT 433624 29 93.1 32 ..............T..A........... GTCGACTGGTCCAAGTATTGCATAATCTCGTC 433685 29 96.6 32 ............................C ATCAAGATTGATAGGTCAATGATTTGTGCAAG 433746 29 93.1 32 ..............T...........T.. GTTGATTTAGTCCTTGATAATTTAGATATTAG 433807 29 89.7 33 ............T.T..A........... AATACAGTTAAATTAGTATATAAATTAATGAAA 433869 29 86.2 32 ............T.T..A..........C AAAATATAAACTATTTCCCTTCGCCTGATCCT 433930 29 93.1 32 ..........................TT. TAAGGGTTGCTATCTGCTTCTTATTAATGGCT 433991 29 93.1 32 ..............T..A........... AGATACTGGCTAATTCAAAGAGCCAAAGAAAG 434052 29 93.1 32 ..............T..A........... AATATTCACAATTACACCTCTATTTCATAAAA 434113 29 93.1 32 ..............T..A........... CCTAAGGCTTGGTTATGCTAAGAAAAACATGA 434174 29 93.1 32 ..............T..A........... GAAATTGAAGATGAATTGGTGGAGAAAGAATA 434235 29 89.7 31 ..............T...........T.A CCCCATACTCTAATAGACGGTAGAAATGATA 434295 29 75.9 0 ..............T.TA...T.A..TT. | ========== ====== ====== ====== ============================= ================================= ================== 45 29 95.5 32 GTAGTCCCCGCACAGGCGGGGGTGATCCT # Left flank : AATCCGGTCCATGACAATATAATAGAGATTGGAGTAGTAAAAGTTGGAGAAAAACAAGAAAACTTTCAAAGATTTATAAAAATTGAAGGAAAATTACCAGAAGAAATAAAAAAATTAACAAGAATTGACGATGAAATGCTAGAAGAAAAAGGAATTCCATTAAAAAGAGCATTAGAAGAGTTTATTGATTTTATTGGTGACACAAGAATACTAGGTTATAATGTTGCTTTCGATATAAAATTTTTAAACTCCTCATTAGAAAAAGAAGGTTTGGCAAAAATAAATAATAAAGTTTATGATATCATGCAGTTTGTAAAAAAAGATAACTTATTTTTGAATAACTACAAGCTGGAAACTGTTTTGAAATCCTATAGCATTGATGAAGAAGTTCCTCACAGAGCTCTTGAAGATGCAATTCTGGAAGAAAAATTAATTCATAAAGTGAATAAATTATGGGATATTTTATAATGAAAATGAGATAGTTACGGGATCTTTTAAGT # Right flank : TACAAAAATGGAAGTTGTTAAAGTTATCTCCAAAGAAAAAAAAGAAAGGTGAGAAAAGATTATGAAAAAAATAATTGATATGTTCATAAAGAAAATAGAAGGCGGTCTGGAAAGATTTGATAATGAAGATGCAGTCCGTAGCATTGGCGGGCTTGAAAGCTTCTTTTTAGATAACTTCGATGAAATTAATAAGAAAAACGACGAGGTGGCTCAACTAGGTTTTGATCTGCAAACAGAAATAGTGGAACTAGAATCAGGTGGAGATAATCAAGAAAGATTAGTCAGGATAGAGAGGATACTAGACAAGATAAAAGAAGCTAATAAGGTACACTAACATTTAAGTTGGGGTGTTTTTGTTTTAAAGCTTATATAGTAAATTTTGTTTTCAGGGAGGAGTGCAATAAGCTTATGAGTATAATTGATGATTTTTTTAAAGAAATAGAGAAGGTCTTATTTGCTGAAGCTTCCAACAATGATTGGGATTTATTTAATGATTTAGA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCACAGGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGATCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1591813-1589037 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134524.1 Peptoniphilus harei strain NCTC13077 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 1591812 31 100.0 36 ............................... CTATTACTACAGATGAACTTGAAGAAGTATTTAATG 1591745 31 100.0 36 ............................... TTTATCCATATAATCACCCCTTAAAATGGAATGTCG 1591678 31 100.0 36 ............................... CTATAATAGAAGAAATTGTTATTAAATCTATTATAG 1591611 31 100.0 35 ............................... TTGCAGTTCCTAAGAATTATTTTATGAGTTCTAAG 1591545 31 100.0 35 ............................... TCTATGTCTTTTTCTAACAATCGTCTCTCCTCAAG 1591479 31 100.0 36 ............................... GTTTCAAAGCCTTTTTGTTTGCCAAATGCTCCATAG 1591412 31 100.0 37 ............................... AGAGGTGGACCTTGGGAAGTCTGGGCTTTACAAGTAG 1591344 31 100.0 35 ............................... AATCTTAGCAGAAGAAAGTGAACTAGAAGACGATG 1591278 31 100.0 35 ............................... ACATTTAGTTCTCATGATTTCTGCTGTATCTACAG 1591212 31 100.0 37 ............................... TCCGACTAAGGCCATTTGAGGTCTAGTTACCAAACCG 1591144 31 100.0 37 ............................... ATCAATCCTAGAATATAAAAAAAGCCTTGGTATCAAG 1591076 31 100.0 36 ............................... AAATTCCATATTAGCCTCCTATAAAAATAAGAGCCG 1591009 31 100.0 36 ............................... TCCTATCTTGTCTTGCCTTGCGTCAAATGATGTTCA 1590942 31 100.0 35 ............................... CCAGGGATCCTATACAGAAAGGCGAGAGAGGGAAG 1590876 31 100.0 36 ............................... CGAAGATTTTGAAAGTTACACACTATCAGAGTTTAG 1590809 31 100.0 37 ............................... ATGAAACAATTTGACTCATCTTACTCGGCATCAAGGG 1590741 31 100.0 36 ............................... TGACAAGGCGGGCCTTGATAAAGAAAAGCTACTCCG 1590674 31 100.0 36 ............................... TAAAAACATATTGTCTTTGTTTAAAGTCCAAACCTG 1590607 31 100.0 36 ............................... TTGGTCATGGGCACTCTCCAAGTAATCAATAACCCG 1590540 31 100.0 36 ............................... TGCTTACTCCATAGACTTTGGTCCAGTTGAGGTGGG 1590473 31 100.0 37 ............................... ATATCCTTATCATTAATAGCCTGGTCTTGAATATCAG 1590405 31 100.0 37 ............................... CAATTGAGACCAAACCAAATGACATGATTACCTCCCG 1590337 31 100.0 37 ............................... TCGTCTTTTAAGACCTCAACTCTCGCACCTAAAAGTG 1590269 31 100.0 35 ............................... TGGCATGGCATAGATCCTCATACCTTTTGTATGCG 1590203 31 100.0 35 ............................... TTAAAAAATCTTTTGTATCTACCAAAATATCAAGG 1590137 31 100.0 35 ............................... AATGATGCCTAATAATTGGCTTAAATGGATTGATG 1590071 31 100.0 35 ............................... CAATAAAATTTCTTCTAATTCGTCTTCTGTTATAG 1590005 31 100.0 37 ............................... CATGTTATCCACTCCATATAGTCCATTATACAGAGAG 1589937 31 100.0 35 ............................... AATGTCTTTCTTGTTAGCTACTGACCTTCTAGATG 1589871 31 100.0 36 ............................... ATAATAGAGGTTTTAAAAACATTCCAGGATTTGAGG 1589804 31 100.0 36 ............................... AAAATAATCAATTAACTAGCGTAATTATCCCAAATG 1589737 31 100.0 38 ............................... CATAACTACAAGGCCCATGATGTCGGATATTTTCCAGG 1589668 31 100.0 36 ............................... ATAATAGAGGTTTTAAAAACATTCCAGGATTTGAGG 1589601 31 100.0 37 ............................... ATATCTTTGGATAGTAGGGGCTGAAACCCCGACCAAG 1589533 31 100.0 35 ............................... CAATTCTTTCCTTGCCGTCCCATTCAAGACCTAAG 1589467 31 100.0 35 ............................... TTACGTATCGTGCATCTTTGCGCACGAAAAGTCAG 1589401 31 100.0 36 ............................... AAACTATCAAAAAACAGTTAATAACACAATAATATG 1589334 31 100.0 37 ............................... GCGGTCAAAGAGCCTTATAAACTACGAGTTTTAGGCG 1589266 31 100.0 35 ............................... TCTAATAACATCTGCTACAACTGGTACAATGTATG 1589200 31 100.0 35 ............................... ATATTCGCTTTTAAAACTTGTGCTGAATAATTTTG 1589134 31 100.0 36 ............................... TCTAATATACATTAGTGTAGTATTATAGGACTCATG 1589067 31 90.3 0 ........TTC.................... | ========== ====== ====== ====== =============================== ====================================== ================== 42 31 99.8 36 TCGCACCCCATACGGGTGCGTGGATTGAAAT # Left flank : ACAGGCCCTTTTATTAAACTCTTACTTGAGAGGAGATATAGAAGCCTATCCACCCTTCATGATAGGAGGCTGAAATGCAAGTACTAATTACTTATGACGTAGAAACAGTAACACCAGCTGGCAAAAAAAGATTGAGACAAGTAGCAAAAGTTTGCCTTGATTATGGGCAAAGAGTACAGAACTCAGTATTCGAATTAAACATTTATCCAGCTGACTTAGTAGAAATAAAAAATAAATTAGAGAAAATAATTGATCCCCAAAAAGATTCCATAAGGATTTATAATTTAGGGAAAAATTGGGAAAGAAGAGTAGAGAGTCTGGGAAGAGACGACACCTATAACCCAGAAAAAGACTTGTTGATATTGTAAAGCTTATGAGACTTGGACCTGGACATAAAAAACCTAGACCTAACTCACAAAAAACAAAGAAAAAAGAGACAAAACTCTTCAAAAAATGATTAGCTGTATTTTTTAGCAGGAGATAATGGCTAAAAAATGCAG # Right flank : TTGGGTTCAAGTCCCATCCTTAGCACCATTTTGTCGCAAACTTTTTTATGGAGAAATTAAAATATTTTAAAAATATGCCTATCCTAAAATTTTTAGGTTAGGTTTTTTGTTGTTAAAAATTTTAAAGATTAAATAGAAACTAGCTAAGGCTAAGTAATATTAGCTTATGAAATTTATTCTGGAGAAGCTAAAATTATTTCAAGTAAATAGTATAAAGGTAAGGATTTTTACTAAGTCATTAGGAGATATGATCTGTGAAATTATTATGATGTTGAAGGTTATTAGGAATTTGTAAAAAATTATGAAGTGGAAAAATTTTATGAAGTTGCAAAAGTTTATGACGTAAAAAATTACTATGAGGTTGTAAATAATTATGAAGTTGAAAATAATTGTGAAGTTGAAAATTATTATGAAGTCATTAAAGGATAAGATGTAGAAAATTTTATCATTTTATAAAAATTATTAATTCATATAGAAGAAAGTCACAAGGCCCTATAAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //