Array 1 6763-6002 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYY01000017.1 Haloferax sp. Atlit-4N P_contig000017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 6762 30 100.0 37 .............................. GGGTGCAGTGGGACGCGGTGAACGAGGTTATCGGCCC 6695 30 100.0 37 .............................. ATCTCCCGACGGCTATCGTCTCGCTCTGAGTCCCCGT 6628 30 100.0 34 .............................. CAGTTCGTGCCGTCGTTCTGTATTTGGAGCGTCT 6564 30 100.0 36 .............................. GCCCGCCGGAACGTCTCCCACGACTCCCAGCCGCCC 6498 30 100.0 37 .............................. GGAGTCTCACTCATTTTCGGGTCCTCCGAAGGTCGTT 6431 30 100.0 38 .............................. AAAGACTCGGCTGACGATGGTTCAACGTGGGGGGCCGA 6363 30 100.0 35 .............................. ATCTCGAAGCGAGGCGTCAACACGGTGAGCGTTCC 6298 30 100.0 37 .............................. TCGGCTCGGGTTGAGAAGGGTTCGGCGACGGCGATTC 6231 30 100.0 37 .............................. AATGCTCCACGAGCGAGATCACTCCGGTTCGAAGGTG 6164 30 100.0 37 .............................. GGCGGCGTCGACGAAATCGCCGACGGCGTCCGCGACC 6097 30 93.3 36 ......................T......T TGGTAGCCGAGGGTCAGGAGAGGAGCCGCACCGATA 6031 30 76.7 0 ............T.T.....A..GC...CA | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 97.5 37 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : C # Right flank : AATTTCGGCTGTACCTCCCTCGCTATGAGCTACTTATTTTTCTGCGTGGCAGTTGTGTACGCGAATTCGTTCTGGGAGACCTTGCTTCCCGCATTGTGAACAAGTCCGGAGCTCTTCTTCGACAGCCTCGAACACTTCAAGTGCTGCTTCTAAATGCTGTTTGACCGCTGGTTCGTGTGTTCGAGTGTACGCTTGCGTGACGTGCATGCGAAGCTCCGCTCTCGGCGATTCACTCATCGGTGATCCCCGTACAATGCGCACAGCATGGACGATCACTCGAACCTCGAACCATTGGTTGCCCACAGTACTGACAGAGCGTTCCGTATACCATCAGAACACTCCTCCGAATAGTTCGTGTGCCGTGATGAGGACACGATTGTCCCAACCGATTTGTGAGTCGACGAACCCGACGTAGGTCCCAACGCTGTAGTCTTTGAGAGGAGTGATTCGCTCGATGTCTCCATGGGCGTCAAAGCGCCACACCTGACGTTTGAACGGAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 970673-968514 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYY01000002.1 Haloferax sp. Atlit-4N P_contig000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 970672 30 100.0 36 .............................. GGACTATCTGCCGAGACGCTCGAATCCGCTCGCATT 970606 30 100.0 37 .............................. TCCTGCTTGTCTTTGGCACGGGCGAGGTCGAAGGTCG 970539 30 100.0 35 .............................. ATCGACGCGCTGGAAAAGGCCGCGCGCCACCGGCT 970474 30 100.0 37 .............................. GCGCCCTCGAAGTGCTCGCCACAGTCGAGGCAGACGA 970407 30 100.0 37 .............................. TGCCCGCGGAAGGACGAGGCCGACGACGAGGTCCGGT 970340 30 100.0 37 .............................. TGAGTGAGGGGGTGGTGCGGAGTAGTGGTATGTCGTG 970273 30 100.0 38 .............................. GACGACTTAGAAGAGTGGGCGACCGAGGGCGTCAATTT 970205 30 100.0 37 .............................. GCCATCAGTCGGACCTCCCGAAGCGCGCCTGTTTCTC 970138 30 100.0 35 .............................. GAGAGCCAAGACGGAAAGAAGGTGTGGCTCACCAG 970073 30 100.0 37 .............................. CCCATAATCACAACTTATGACCGGCACCATCTTGGCG 970006 30 100.0 35 .............................. ACGATTTACCACATCCTCAACTTCTGCGAGTTCGA 969941 30 100.0 38 .............................. ACTCGGTCTTTTTATGTCGAGTGCTCAAATCGGAGACC 969873 30 100.0 36 .............................. GACGACGTGAGTCGTGAGGTCGTTGAGAGCGACGCT 969807 30 100.0 38 .............................. TCCCTGACTTCCGCCGACGCCATCCACTTCTCTTTCTC 969739 30 100.0 34 .............................. TCGTCGTCGTCGTTACATTCCGCTTTGATGAGTT 969675 30 100.0 36 .............................. GAAGTCCAAGAGTTCGTATCGTATCCTCTCGCGCCA 969609 30 100.0 36 .............................. GAGGCATGGCAACGGCAACGAGACGCCGAGGAACGG 969543 30 100.0 38 .............................. GATTCGTATGGCATGGGTCCGGTATATGTCGATGCCGC 969475 30 100.0 38 .............................. TTATCGCCGTACTGCACGTTCATCGGCGTGTACGTCTC 969407 30 100.0 34 .............................. ACCACGATTTCGTGGGACACGACGAAGGTCACGG 969343 30 100.0 37 .............................. TCCCGTCGTCGTGTCGGCCCGTTGCTAACTGAGGGAC 969276 30 100.0 34 .............................. GAAGGCGGTGATACTTCGCAGGACGGCGGAGACA 969212 30 100.0 36 .............................. TTCGACACCGTCCGCCTCCAAGACGACGCGCATTGC 969146 30 100.0 36 .............................. GCGTACCCCGAGACACGCCTCACTCGACGAGGAACG 969080 30 100.0 36 .............................. AGCATCCACCCCACGGCGAAGCCCGCGGTGGTCGTT 969014 30 100.0 37 .............................. AAATGACTCCGCCTCCATCGCCAGAACTCACCTGGTC 968947 30 93.3 38 ..............TT.............. CGGATAGAACCGCTGAACTTGCGGCCGAGTGCCGTATA 968879 30 93.3 38 ..............TT.............. AAGGAATTGGACACACCAGCGGTTGAATCGATTTCCCC 968811 30 100.0 37 .............................. ACCTCGGGCGGCTCTCCCTGACCGTTGCCCCACGAGT 968744 30 100.0 37 .............................. GGGAACAACCCGCCGCGCGACGCGGTGCGCGACTTCA 968677 30 93.3 35 ...............T......T....... TCGGGAGTCCGCGACGAGGAGCTGAACGAGCACAT 968612 30 93.3 38 ...............T......C....... ATCGTCATGAAGCTCAGTCCGTTCATCGGCTTCAACAA T [968593] 968543 30 86.7 0 .............T...C..A.....G... | ========== ====== ====== ====== ============================== ====================================== ================== 33 30 98.8 37 GTTTCAGACGAACCCCTGTGGGATTGAAGC # Left flank : TTCTTTGAGTTGGTTACAACCCTGCCATGATCTGCAATCGAATTGGGGCCCTCCCAGATGACTCGAAAGCCAGAGCCAACTTCAACAGCACAAACCCGCTCGTTCTTTCCTTGAACCTTCGCTAGGATGTTTCTCTCCTCTCCATCAAACGGATGTTTTGTTCTCCAGTCGGGGAAATCAGTGTCCATTACTCAGATATTAGCCAACTAGTACATAGTTTCGAGCTTATCTCTCGTTACCACTCGGAACTGCTAACCCCACAACTGGTCGCTTGCTGTGAATACGGTGCGTATAATCACCGTCGTGCTCTCGCGTGCTTCGTTGATATCCTCTCTGCGCTAAAGCACGGGGCTCTCGACTACTTACGTGAACAACATTCGGTAGGGGTGAGAGGAGTTGGTTCCGTCGACCCCCCGGGGGTTTGGGGGGAATTGGGGGTCGACGGAAACGTTGATAGGAATTCGGGATGTACGGGTCTCTATACCCGTGAATTCAGACGG # Right flank : CGCTCGATCACGGTGAGCATCGGGTGTTCTCATTTTCGACTACCAGTTCCTAGAGCAAATTGCGATGTCGGAGTGAACATGCTACGAACTATCTGTGATTCCTTGCTTGAGTCGAATATCATCGCTACTCTCAGACGCAACTGCTTAGAGACTCAATTCTTCTCTTCGAGAAAATCCAGGCGTGTGCGTACAGTCTCAAATCCAGTTTTAACGACCCAGAATCCGATACCTGTTAAAACTGAGATGACCCCCGAGAGAACTCCAATACACACGTATATACTCACTCCAAACATCATTTGATCACTCATCGCGTGGTTTCCCCAATAAGTAACCAAGTCTAGCTACTGTAGACTATCTCTCTGAACCCGTTTTTCTCAACCACACCGTCATACTCTACGTATTATCTCTGATCTCCGCCGAGCATCCCCGTTGATATGTTGATGATTCTTACTCTCGTTTCAGAACCTCGATTGCTCAGCTCTACAACGCTCGAATTCCTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCCTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 973473-971392 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYY01000002.1 Haloferax sp. Atlit-4N P_contig000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 973472 30 100.0 34 .............................. ACGTACAAACACCTTCGGAAAACTTTCCTCGCCG 973408 30 100.0 37 .............................. TGCCCACCGTCGGTCACCAGTTCCCGAAGGTCTGCCC 973341 30 100.0 37 .............................. GGGTCGCGAACCGCCTGTCCGGGGTCGGAGAGGAAGT 973274 30 100.0 36 .............................. ATCGGAACCGGCTCTGGGACCGAACAGCCACAGTCC 973208 30 100.0 38 .............................. CCCGACCACTCCGTCGACGCCATCGGAGGTGGGTCGGC 973140 30 100.0 36 .............................. GACGAAGAGCACTGCGCGGCATGCGCGCACAACATC 973074 30 100.0 35 .............................. CCTCCCGCGTGCCGTCCGTCGGTTTTGCCCGAGTA 973009 30 100.0 38 .............................. GGGCGTCGTTGCGGTGCCGCACGGGGCCGCGAGAAAAG 972941 30 100.0 37 .............................. CTCGGTGTGATGGAGGCGGTTGGTGCGAAGTCCCTCG 972874 30 100.0 35 .............................. AAGCTTGAAGACGCCCGAATCCACGATATTGGGGA 972809 30 100.0 36 .............................. GCGACGCGGAGCGACCTCCCCGACGAATCGACGCTC 972743 30 100.0 37 .............................. CGCGTCCCGTCCGGTCCCGATCTCAACGACTTCTAAT 972676 30 100.0 37 .............................. CGCGTCCCGTCCGGTCCCGATCTCAACGACTTCTAAT 972609 30 100.0 37 .............................. GGTATAAAAGCCCTCGATGGGTCGTCTCTTAACGTTT 972542 30 100.0 36 .............................. GGATTGACGTGCCCATTCCCGAGGAGGTCCGGGTCG 972476 30 100.0 34 .............................. ACTCGGTCTTTTTATGTCGAGTGCTCAAATCGGA 972412 30 100.0 38 .............................. TCACGACCGAGTGAATCGCTCTCACTCGTCTCACACCA 972344 30 100.0 35 .............................. GGGTGGTCAGCGAGCTGCTCGACGGTGGTCCGGGT 972279 30 100.0 35 .............................. TTCGGGACCGGCGCGGTCAAACCCGGTTGGGGCGA 972214 30 100.0 37 .............................. ATCGTGAGGATGAACGTCCCGTTCGTGAATCGCCAGT 972147 30 100.0 34 .............................. TGCAAGCCGAGATATGCACCGCCAGCTAACGCTC 972083 30 100.0 36 .............................. GTAATGGTCGGTGGCGAGTGCAAGCCTATCGACGAC 972017 30 100.0 37 .............................. GGGCTTGACATCGGCCACCGCAACCCGAGCGCGCTCA 971950 30 100.0 37 .............................. GGGCTTGACATCGGCCACCGCAACCCGAGCGCGCTCA 971883 30 100.0 33 .............................. GATGTCACTCGCGTCGCGGTCCTCCTCGACGGC 971820 30 96.7 37 ...................A.......... CAGGTGGGCGTCCGCGTAAAGACCGACTCCGGTACCG 971753 30 83.3 36 ACC........C..........C....... AGGCTGATGTCGAAGACCTGGTTCCCGATGACCAGC 971687 30 83.3 37 ........G..T.....TC..........T GTTATTGGCGTGAACGCGGGAACGGTCTTCGTACTGT 971620 30 86.7 36 A.....A.G.........C........... CACATAAGGACAGTAGCCCGCTTACTGTTGGCTATC 971554 30 100.0 37 .............................. TCGCTGCCCGACCGGAGATTCGAGACGGCGAACATGC 971487 30 93.3 36 ...........C......C........... GGGTCGCTCGTCGACGAGTGCAACAAGCGGATTCGG 971421 30 93.3 0 .......T.....T................ | ========== ====== ====== ====== ============================== ====================================== ================== 32 30 98.0 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : GATCAAACAGACTTTCGCGGACGGTTGTGAGTACCTCATCACTCTTCAGCCCATCATCAAGATCGCGAGTCGCAATACTTTCTTCGTGTTTACGAAATGCCCCTACGAGTTCAAACGCAATCTCAGGCGGTTTCTTTGTCCGGGGATAGTAGTGAAAATGAATTGTAGAATCAGTCATGTAGTTAGCATTAGAGACACCACTGATAGATTTTTTCACGGATGATGGCTCACCCGGGACGTGTCTGTGAATAAGGGTGAAATTGGGCAAAAGCCCCTGAGAAATACGTACGCTGATTTCACTGTAGCTCCACCAACCTATCCACAGGTGAGATCAATCGAGATGGCAATCGACGTACTATTGTTTGAATAACCGGTTCTCGGAAGATTTGAGAGGAGTTGGTTCCGTCGACCCCCCGGGGGTTTGGGGGGAATTGGGGGTCGACGGAAACGTTGATAGGAATTCGGGATGTATGAGTCTCTATACCCGTGAATTCAGACGG # Right flank : AAGCAAGCGCGCGGACGCCTCGACGGTTCTGGGTCCCTGTTTCAGACGAATCTTTCAGGAAAGTTGATCAGCTTCTTCAGTCTCTTCAACCACTCGTCCTGAATGAACTGTTCTCGGCTTCAGGTAGCTTACTCTTCTTCAAGTAGATCGTGATTGAATTGCACTTTAACCGACATCTGATGTTCTTGGGCACAAGTTGCGAGCGCGGGGAATGTGGTATTCTTTGAGTTGGTTACAACCCTGCCATGATCTGCAATCGAATTGGGGCCCTCCCAGATGACTCGAAAGCCAGAGCCAACTTCAACAGCACAAACCCGCTCGTTCTTTCCTTGAACCTTCGCTAGGATGTTTCTCTCCTCTCCATCAAACGGATGTTTTGTTCTCCAGTCGGGGAAATCAGTGTCCATTACTCAGATATTAGCCAACTAGTACATAGTTTCGAGCTTATCTCTCGTTACCACTCGGAACTGCTAACCCCACAACTGGTCGCTTGCTGTGAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 854-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYY01000023.1 Haloferax sp. Atlit-4N P_contig000024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 853 30 100.0 37 .............................. AGTTCGTCGACGACCCGAGGGAGGACGGTGATGCAAA 786 30 100.0 35 .............................. CACTGGCTGAGGGGTTATCTCGTGGACCCGCCCGT 721 30 100.0 37 .............................. GACTCGACGAACGCCTCGGCGCTCGCCGACGAACTCG 654 30 100.0 37 .............................. GGCGGGATTCGGATGCCCGAGATCAACAACGAGACGG 587 30 100.0 35 .............................. TCGCCGTCGAGCCACACGTCGCCCCAACCGGGTTT 522 30 100.0 36 .............................. GCCACCCACCACTTTTATCACTAGAGCTTCGGTCCG 456 30 100.0 36 .............................. GGCTTTGCACTCGCCATCACGGTGGGTTCCTACCCA 390 30 100.0 38 .............................. CTGCCGCTTCACACAGCCGGTCGACGCGCCTGTTGATG 322 30 100.0 35 .............................. AATCCGTCGCGTCGAGCGAGCTTGCGGTGCGCGTC 257 30 100.0 35 .............................. TCCCTGACTTCCGCCGACGCCATCCACTTCTCTTT 192 30 100.0 36 .............................. TGGCGTGTATGACAGTGCAACTGTGCAAAGTACCGC 126 30 100.0 36 .............................. AAAGCGGAGGGTTCTCCCTCCGATGCCCACGACGAC 60 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 100.0 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CCTCGATCAGACGGTAGAACATCCACGCCTGAAACGGAAAGTGAGCTTCAAGACGCTTATCCAGACAGACGTGTACAGCCTGAAGAAACACCTCCTAACTGGAGAGCCGTATCACGCGACGGAAAAGTGGTGGTAAGATGCACGTTATTGTTGTCTACGACGTCCCTGCCAAGAGAACCCGGATTTACCGTAAGTTACTCCGACGACGGTTGGAGCATCTCCAGTATTCAGTCTTCTTTGGTGAGCTCACAGAAGGCCAAGTTACTGCCATGAAAAACGAGATCGAATCTGAGCTTGAACCAACAGATTCGGTTGTCGTCTTTGAATTCAATAATCCACATGCATTCGAGCACACAACGTACGGCGATGCAGATGAGCCAGGTAGCCGGTTTACTTGATTTCCGTCGACCCCCCGGGGGTTTCGGGTGAATTGGGGGTCGACGGAAACACTCTTTTGAATTCAGGCGATACACGCTATTGTACCCGTGAATTCGGACGGG # Right flank : CTCGACACTGTGTTCCTCGCTGTCGTCTCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4685-4455 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYY01000025.1 Haloferax sp. Atlit-4N P_contig000026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4684 30 100.0 36 .............................. TCGACACCGTGTTCTTCGATGTCGTCTCTGAGGACT 4618 30 96.7 37 .........................A.... TCATCGTCCATCCACTCCACGCGCTCCAGCGTTTCCT 4551 30 100.0 37 .............................. GACCGATCCGCTCTCTCCGAGTCGTAGCGACCCGCAC 4484 30 90.0 0 ...........T.............A...G | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 96.7 37 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CACGACGA # Right flank : ATAGTCAGCGTTCCCAGTTATACTAATGCATCCAGCTACCAATTCTAACGCTGTTGTCAGAAACAACAGTATACTGTTGAAGTAATAGAGGCATGATTGATTCGCCTCCGATCAGTTAATGCCACCTGACATATAACTCATTGACAAGCAAATAACTAATCATGGAAGTACTCATTGACACAAATATATTCATTCATCGAGAAGATGATAAGAAAGTTCCAATTTCTCTACAGAAACTTGAGCGGGCACTTAATGAACAGGGGCACATTAAGCTAATTCATCCACTTTCAGCGAATGAAATTAGAAATGATCCCAACAAGAAGCGCCGAGAGACGTCGACATCTAAGCTTGAGACGTACCGTGAATTAGAATATCCGGAGTACCCGTCTCCTGATTCGGAATTTCGAGAGACAGTCCCAGCTGATAGTGGGAACGGAAGAGTTGACAACATGTTGTTATATGCTGTGTATAACGATGATGTCGATTTCTTGATCACAGAA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6-431 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYY01000029.1 Haloferax sp. Atlit-4N P_contig000030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 6 30 100.0 38 .............................. CGGGATTGCGGACGCCGCGATGGGGTACGGAACCTGAA 74 30 100.0 37 .............................. TATTTCCATCCACAGAGACGGTGATGTTTTCCGAAAC 141 30 100.0 34 .............................. CGGTCGCATCACGGGAAGAGAGTAAGCAGTCGTT 205 30 100.0 39 .............................. CTTTCAGTGACGCTCGGTGCAGGCCGCCCCAGAACTTTC 274 30 100.0 34 .............................. TCGTCCGAGGCGCTATGGCTCGCGTATGCCGAGA 338 30 100.0 34 .............................. GAAACAAGCACAGCCGTCGTTGTCCCAGGGACGG 402 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 100.0 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CGGCCG # Right flank : CGTCCTTCGTGACGCCCGCTTCGAGTGGGGGACATGAGTTTCAGACGCGTCCCTGTAGACGAAGTGCTTTCCGAGTTCTCAGGACAACACACTGACTATACTGAGTGTGAAACATTATATACCTCCAATACCGTTCTAGAACCACGATGGCTTACCCACAACCCGTTCCATCCCTTACTGAAGACGAGTTCGCCCGTTTCCGCGAGGAGATGAGCGAATTCGAAGCCCCACAGGAGATGGAAGATGACCTCGCCCGGCACCGCGAGGCACTCCAAGAAGAGAATTAACTATCTTTTTAGCCGTCTGTTGCTTTCCGGCTCATAGTGAGTTCAAATTTCAAGAAGATCCACCCACGGGTGGACATCCGCCCGTACAAATTGGGTGAATCACTCCCAGAATTTGATTGCGGGAAATCCTGGTTTAACGACTTCATCAACACAGACGAAGTAGAGAACTACCAACGGGAGCGCCTGGGGAAAACGAAATTAGTGTATTTCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1080-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYY01000030.1 Haloferax sp. Atlit-4N P_contig000031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1079 30 100.0 38 .............................. ACCCTGACCGCGGGCTCGGGCGAACCCGTGCGATTCCA 1011 30 100.0 37 .............................. GTCCTCAGCGGGCGCGAGGACATCCAGAACCCGGGTG 944 30 100.0 38 .............................. CTCTGGTCCGGTGGCATGGGTTCGATATCGGCCAATAA 876 30 100.0 36 .............................. CGCGAGTTCCCGAGCGCCTGCTTGTCGTAGGTCGTC 810 30 100.0 36 .............................. GTCGGATTGCGGGCTGAAACGCTCATAAACCCAATT 744 30 100.0 33 .............................. GATTCATCGTCTGGACCACGCGGCGCTCAGCGT 681 30 100.0 35 .............................. GTGATTCGCGAACGCCGTCACGTCGAGCGTCGCGC 616 30 100.0 37 .............................. ACGCTCCGCGCCGAAGTCTCGTCGGAGGCGGCCGACG 549 30 100.0 36 .............................. ACCGAAATCTCGCCCGTCACGCTCTTGCCGACGCCG 483 30 100.0 37 .............................. GTCAAACTCCGCAACGACGGCCGCGACGAGGACTCGC 416 30 100.0 38 .............................. GCGCCCTCGAATATCCGCAGTTCGTCGGCGATTATGTC 348 30 100.0 35 .............................. GCGGCGAGGTCGTTCTTCACCAGCAAGTCCACGTT 283 30 100.0 37 .............................. GGCGTTATCACGATGTCGGAACTCGCCGCACAAGCGA 216 30 100.0 40 .............................. GATGTTCGGGTGTGAAGCGGAAGCGACGGAGACCTGCATT 146 30 100.0 35 .............................. CTCCGTGGAGTACGCAGAAGGCGTCTCCGACGATA 81 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 16 30 100.0 37 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CCTCCGCGAACGCCTGTTTCACGCCGCTG # Right flank : CACCATGGACGAGAGTACCGGGGCAGATTTCGTCGTCTCCGCGTTTCAGACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 34547-33054 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYY01000005.1 Haloferax sp. Atlit-4N P_contig000005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 34546 30 100.0 37 .............................. GGCGACGCCGCCCCTCTCGTCGGTCTCTCGTCCTCGT 34479 30 100.0 37 .............................. GTCCGTCGTCCAAACCGTCGTCCACCGTCGGTTTGAG 34412 30 100.0 37 .............................. GTCCGACTCGCCGGGAAGCGTTTGGATGACGCATTCT 34345 30 100.0 38 .............................. GGTTTAAGTACGAAACCGGGACTTGGTGTAGTAGGCGA 34277 30 100.0 35 .............................. GTCGAGAAGGGCGGGAGCTACCGCCCGGAGACGGC 34212 30 100.0 37 .............................. ACCCGGAGGAACCACACGCTGGATGACGTGTGAGGCA 34145 30 100.0 38 .............................. ACGCGGATTACCGTGTCCGAGATGGTTCGCCACGCATC 34077 30 100.0 37 .............................. AGCCGCTCCGCATACCGCGCGGCCGTCGAAGCCGGGA 34010 30 100.0 35 .............................. GCGCGGTGTGTTCGACGTTCCCGGCTTCGGGGCGC 33945 30 100.0 35 .............................. CGACAGCGCTGCGAGGACTGCGTTCCGTACCTCGG 33880 30 100.0 35 .............................. GGGAGAGCGCGACGATTCCGGAATTATTCGAACCG 33815 30 100.0 38 .............................. ATTTATAGTATCTCCACAGAATCGGTAATATGAGCATG 33747 30 100.0 37 .............................. CGCAAGCTCGTCCAGAACGAACGCGACGAACACGGCC 33680 30 100.0 36 .............................. CGTTCTCTGGGCTGAGCCTGACGCTCTTCCGGTCGT 33614 30 100.0 36 .............................. AATCACCTACTCCGAAGTCGGGGAAGTGTTCTCAGA 33548 30 100.0 37 .............................. TCTGGCTCGCCGCCGTCTTCCAGCTCGGCGAGTCCGT 33481 30 100.0 35 .............................. GACCTCGTTTTCAGCTACGACGAGAGCCTCAACGG 33416 30 100.0 37 .............................. GAGTGTCAACACGACCGGCGTCTGGGACTCTATCATG 33349 30 100.0 38 .............................. GTGACTACCCTGATTGTTGATAATTGAGATGCTGTATG 33281 30 100.0 35 .............................. TCTCCGTCGTGGTCTCTGAGATTGGAGTGATTGTC 33216 30 100.0 35 .............................. GTTGCGTTCGTGTTAGCCGTCACGGAATCAAGAGT 33151 30 100.0 38 .............................. GACCCCCAGGCGGGCGTCGTCATTATCGACCTGCCAGA 33083 30 90.0 0 ....T........T..............T. | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 99.6 37 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : TGCAGATGTGACCAGTCACTCAGATGCTGCCCGAACGATCGACCTGGTCGATACCGTTCTTCGTACTCTTGGGGTTGCTCCTGACGCTGGTTCGTTTGATGGTGAGCTCATTAAGACTGGAGGTGATAGTGGGGCGTCTGGGTCGACCGTTGCGGAGTTCCCAGACGTTCCGGACGAACATATTGACCAGGTTACTGAGACTGTCGGTCGTCTCCAATCGGAATTTGAGGACGGTGCTCCCGAAGCGGAGGTTATCTCTCAGTGCCAGCAAAGCGGACTTAGTAGTGCGGCTATCGAGAGCGCACTCGACGCGTGCAAAATAAGGGGTGCGGTGTATGAACCACGAGTCGATGTCTACCGGACGACGTAATCGGGTCGTAGGTCGGTTGTGCGGTGAAAGTTCCGTCGACCCCCCGGGGGTTTGGGGGGAATTGGGGGTCGACGGAAACGTTGATGTGAGTTCGGCATGTACAGCCGCCTACCCCCGTGAATTCGGACGG # Right flank : GACGTTCTCGTCTGCGTGCGCTCCTGCTCAGCTGCGTCGGGAGTACGAGGGAATTTGTCTATTCCATACTGTTCGTGTTTATCGACGTAAATGAGAGCAGACACTACTATCGAGAACACTAGCACTACTGCGATAGCAGATAGTGCTATACCAACCGAAAGCTCGTAAGCGAAGTATAGCATTGCGACACCCGCCCAAAGTAATACTAAAAAAATACTGCTGGTGATAACTGCACTAACGAATGGAGACCTTTGGCGGGCTTCTTCAATGTAGTTGAGTGCACGATAAATGAGATAGCCAAACGCCGGGATTAGCCCGACCACGTAACTACCCTGAGAGATATTGCCATACGTGCCGTAGATCATAAGTAGCCAAAGTACAAGAATTGTCCCTGCTATACCTGCCGCCCGCATCTCAGAATCCAACGTTGTTTCGTGAGTACTCGAACGCCGTGTCCGTATAACACCCCACACAGCCGTGACAATAGTCGTGAGGAATAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 525-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYY01000047.1 Haloferax sp. Atlit-4N P_contig000049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 524 30 100.0 38 .............................. AGACGACACCGACGACTCGGATTCAGTCGGAAAGATGG 456 30 100.0 38 .............................. GCTTGCGATGTTCGTTCTATGTCGCCCTGACGAAGCCC 388 30 100.0 38 .............................. GATGTTTAACGGTTTAACGAGTTAACTGTCTCACACTT 320 30 100.0 36 .............................. TGTGACCGCCACTGCCACCAAGACGTTGCAGGCCAC 254 30 100.0 37 .............................. GGTTCGAGCCCCTCCCATCGCAGTTGCGCGTCGCCGT 187 30 100.0 37 .............................. AGCGAGGGCCGCGCTCGGCGAGCGGTGAAGGCCGCGC 120 30 100.0 36 .............................. TCACGTCTCCGAGTCCACTCGTGAGTCCCCGACCCC 54 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 37 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : ACCCTTGTGGGATTGAAGCGAATCCCGGTCCCCGGCGACCGTGTGGGCGTTGTTCT # Right flank : CATCGCCACGCGGGCCGTGCCGTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //