Array 1 242423-243729 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJPX01000003.1 Klebsiella pneumoniae strain EuSCAPE_BE090, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242423 29 100.0 32 ............................. CCTCAATATTGGGATTTACTGATTGAATTGCG 242484 29 100.0 32 ............................. GCACACCTCAAAATACTGTTAATATATACAGT 242545 29 100.0 32 ............................. AACCGGTAAATTATTAAATGTTGGTGCGGCCT 242606 29 100.0 32 ............................. CATGGCTTACGATCAGCTGGCTGAGCGATTTG 242667 29 96.6 32 .........A................... TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 242728 29 100.0 32 ............................. AACTGATAGCACATCGCCTCAAGCTCTGTTGT 242789 29 100.0 32 ............................. GCAATAACGCCCTTCGGCATCACGCCTAACAA 242850 29 100.0 32 ............................. CCTGGCGGGGCGGTCTTCTTTTCTGGCCGCCG 242911 29 100.0 32 ............................. TCACTACTGCAGCCGCCCTCACTGCAGCACCG 242972 29 100.0 32 ............................. ATTTAAAATCTCCATTCAGTTGTGTTCGACAA 243033 29 100.0 32 ............................. GTCATATCATGGACGTCAAGCGGCATTGACTT 243094 29 100.0 32 ............................. GAGGCAATCAGGATTACATTTACCGGACATAC 243155 29 100.0 32 ............................. CGTGGCGGGTTGACCAGATCGGCGATCTGCCC 243216 29 100.0 32 ............................. ATTCCTGCGGGACCTGATAATAAAAAGGTCAG 243277 29 100.0 32 ............................. TACGATAACGCGCAGCAAACAGGCTATATCAC 243338 29 96.6 32 ............................C GGTCCAGTTTGGTTCTTTAGGGCGAACTACCT 243399 29 100.0 32 ............................. AAGGTACTCCATGTTTTTCATAAGCGGTATCA 243460 29 100.0 32 ............................. TTTTTTGGTACAGGTGGGAATACAGGCAACCA 243521 29 100.0 32 ............................. GCGGGAGTGCGAACCGCCGTCCCCGTTATTGT 243582 29 100.0 32 ............................. TAACAGGGCCATTTTCCCGGGTTGCCAGACGA 243643 29 96.6 29 .........................G... GGGTTCACTTGGGTGAAACTGAACTAACT 243701 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGCCGTCTGTGGCTGACGCAGCGCGTTTTGCGACAGCAGGGGGCCATTCGGATGCCACAATCTGCCCGATTATTGATTGAATCCGTCTACGGGGAAGATATCGCTATTTCCGATGGTTTAGCCAAAGCCGAGCAAGCGCAGTTGGCAAAATATTACTGCGATCGCGCGTTTGCTCACCAAATGCTCCTGAACTTCAAGCCGGGATATAGCCCCGATAGCAGTGATTTCCTGGCTGACAAGCTCTCTACTCGCCTGGCAGAAGAGTCGATCACGCTGTGGCTGGCGAAAAACGTCGATGGACAGTTGCTGCCTTATGCCTGCGGCGCGCATCCGTGGGAAATGAGCATGCTGCGGGTGCGGGAAAGCTGGTGGCGTAAACACAAAGCTGAATTCACGCTCCTGGCTGAAAAGCCGCTACAGCAGTGGTGTGTACAACAGCATCAAAACCCGGATTTCGCCGTGGTGATTATTGTTACAGACTCGCCGGATTGCGGTTATT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGTGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2263-3261 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJPX01000052.1 Klebsiella pneumoniae strain EuSCAPE_BE090, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2263 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 2324 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 2385 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 2446 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 2507 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 2568 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 2629 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 2690 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [2744] 2744 29 89.7 32 ......T.....CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 2805 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 2866 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [2871] 2928 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [2933] 2991 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 3052 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 3112 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 3173 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 3234 28 79.3 0 ........T.A.CA........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGA # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //