Array 1 1229454-1230536 **** Predicted by CRISPRDetect 2.4 *** >NC_017941.2 Haloferax mediterranei ATCC 33500, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1229454 30 100.0 36 .............................. TCCCGAGGAGTCGTCCGCGTCGACGCGGATGAGTTG 1229520 30 100.0 35 .............................. GTGCATCGCCGAGCGGTCGTTCGGGTCCATCTTGT 1229585 30 100.0 34 .............................. TGATGATGGGTCCATCACCACCCACCCCCTGCGT 1229649 30 100.0 35 .............................. AAGAACCATTGACTGGAACGCAACGACGCATCCTC 1229714 30 100.0 37 .............................. TGGGGATGTCTCGGACAATCTCTGACCGTGTGATAAA 1229781 30 100.0 37 .............................. TGACTGGAGAGCGTGCAACGGCCTATAAGATAGACCT 1229848 30 100.0 35 .............................. TCAACTGTCCCCTTGTCCGCTTCGTCGCCTGAGCG 1229913 30 100.0 36 .............................. GTACTTCTCTCCATCTTCGAGATTAGTGACGTTCAG 1229979 30 100.0 36 .............................. GTACTAAAGTGTGGCACGGAAAACACGAACAGCCCT 1230045 30 100.0 34 .............................. CCATCGTGGGTTGATTCGATACTCGACCGCAACG 1230109 30 100.0 35 .............................. TCGACTTGCGAGATAATGTCGTCTTGCTCGGTGGT 1230174 30 100.0 35 .............................. AAATATGATACCACCGAACCCGTTTGTAGCGCCCA 1230239 30 100.0 37 .............................. GTTGGTGCCCGCGCGGTTGGCGTAGGCAAGGTTCGTG 1230306 30 100.0 36 .............................. TGAGGTCTTCCCTAACTTCTGCATTGGTGTGTCCCG 1230372 30 100.0 37 .............................. AAACTCCTCGGCGTCGACACCGAGCGCACGATCGACG 1230439 30 100.0 38 .............................. CGTTTCCTCATCGAGGACTATTAAATCTCCTGACGAAT 1230507 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 100.0 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : GGTTATTGTCAAGCGTGTTGATAACGAACTTGTTGACCGTGTCGATATCGGCGTCACCGACGGCTTCCAACCCGTTCCGCAGGTCACCACTGTAAGCGCGAATCTTGGTTGCTATGAGGAACGCTGTTTCTAAGCACAGTTCTGGTTCGGTCGCTGCACAGTCCTCCATTATAATTGAGACGTGCGAGAGGGACTGGTAGGAGAGTGAATCAACGATACTCTGCACTTCAGTCAGTTTTTCTGAACACGACAGAGAGTCATCCACTTCGAGGTCTACGACGTGCCAGACGGGAAGTTCATTGTCCTCGGCCATGACTGGTAGTATAGTTGCCTATCTGATAGCTCTACTCCGAGAAAACCCGAATCTCGGAAGTCCGTTACGTGGGTCCTGACCTGAATTTCCGTCGACCCCCGGGGGGGGTTGAGGGTTATTGGGGGTCGACGGAAACTGTTGAGTGTGAGCAGTGTGTAGGAGACTGTATGCCCTCAGATTGGGCATG # Right flank : CTTGCATCTCTTCCAGACTCTCCTCTATGCTCCGGTTACAGACGAACCCTTTCTCGTGAGGACTTCCGAAAATAGTCGATTCTCGGAGGTACCCTGACGGGCGACATCAGTGAATCCTTCGTGGACCGATGGACATCATCACCCAAGTAACGAGGATAATCACAAGGATGGGAAGCACGTCAACACCGGCCATCCACCACGGATTGACTGTTCGCGTCACGGTGACCGTCTCCTGATGAAACCAAACGTGTCTCGGTGGCGATGTTGAGAACCAAGAGACGCCGAGTGTGATCGAAACGACGACTGTGAGCACTGCGACTGGCTTCGATACGTGCTTGATAGCACCGAGCAACTTGCCACTCATAGTCGCTTCCTCCTACCTCGTGGTTCGTCGAGGCCGTCGCCATTCTCCCGAACGTGCATCCAGCCGAGCGCAGTTCGGAGGTAGTCAATATGGATGGCCATCTCACGATGAGTGCGTCCGGGGGACTCATCGGTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1259098-1260440 **** Predicted by CRISPRDetect 2.4 *** >NC_017941.2 Haloferax mediterranei ATCC 33500, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1259098 30 100.0 34 .............................. GAACAGGATGGCGAACGCGGTGTCTGCGCCAGTT 1259162 30 100.0 35 .............................. CACGACAATCAAGTCTGGTTGCATGGCGACACGGA 1259227 30 100.0 37 .............................. CTGTGGCCTCCAGCGGCCGTCAGACAGTCGCATCCGA 1259294 30 100.0 36 .............................. AAGAAGCCGCTCGCCGTCCTCGATGACGGGCGGGCG 1259360 30 100.0 36 .............................. GACAAGACTCGCGACGAAGCCGAGTCGAAACGCCGC 1259426 30 100.0 36 .............................. CTCTTTATCCCTCCTGCCCGAATGTCTACGAATATC 1259492 30 100.0 36 .............................. GAACCCACTGGTGAAGAAAAAGTTGTAGAGACCCTA 1259558 30 100.0 37 .............................. ACGACAATCAAGTCTGGTTACATGGCGACACGGATGG 1259625 30 100.0 36 .............................. TTCCACAACGTCGGGGAGGGCGAAATTAGCCAAGCA 1259691 30 100.0 35 .............................. TCCCGCTGGGGATGTCGGGAGTGCCGGGCGAGCCA 1259756 30 100.0 34 .............................. CCCGGCCCGTTGCCCCCCACGGCAATCGTCTGCT 1259820 30 100.0 34 .............................. CGTCTGTGTTATTCTGTGCGTCTGCCGCGACAAC 1259884 30 100.0 35 .............................. ATTGCCTGTCCCCGTCGTGTAATCAACTCGGAATC 1259949 30 100.0 35 .............................. GAGATGTGCGACCGCGGCGAAATGAGCAGTTCGTG 1260014 30 100.0 37 .............................. GCGACATGGGGACCGTCGAGAACGCGCTCTATGGGGA 1260081 30 100.0 37 .............................. CGAGGGTCCCGGTGTCGAGAGGACCGGGACGGACGGA 1260148 30 100.0 38 .............................. TCGGTAATCTGGGAGGCGTCAGTCTCGGCCGAGTAATC 1260216 30 100.0 36 .............................. CTCGCCATCGCCGCGAACTCGGTCCTCCTCGGGGTG 1260282 30 100.0 35 .............................. AAGCCTTGAGAGTGTCTGTTGGTATGATGAATGTT 1260347 30 100.0 34 .............................. AAGTAGACCGCGCTCAGTTACGACAGCTGCTCGA 1260411 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 100.0 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : ACCCAAGCCATAGCAGATTAAAATAATTCGAGTACTGTCCGTTCCAGATGTTGATGGTAAGTGAATATTCCCAACCACTCCTCTGCCAATGGCTTCTTTTTCCTGGACGCCTTCACTAGTCACATTCGTCCTTCCTGCTTGACCACCACCGAGAGCTACCAACACGACCCCGATAATTGCGGTCAGGACGAGATATAACCCAGAGTGTGTCGTTAGATAGATAGCACCGACAGTAATGATTCCCGCGAGAATCGTATAGATGAGGACTGTTACTGCGACTACTCGCTTGTCCATGTCATAAGTAGAACGACAGTTAGTTTAATTTTTATCATTTTGAGGAATTGGTGTATCGCGCGTCCCGGTGTTCTCGGAAGTCCGTTACGTGGGTCTTGACCTGAATTTCCGTCGACCCCCCGGGGGGTTGGGGGGTATTGGGGGTCGACGGAAACTGTTGAGTGGGAGTAGTGTGTAGGAGGCTGTATACCCTCGAATCGGGCATG # Right flank : CACGATGATCTCGCCAGTCTGCAGCGTTACATTGGGTTACAAACGAATCTTTTCTCGTGAGGACTTCCGAAACTAACCTCTTCCCGGAACTAGTCGAAGGTCAAACAGTAACTACAGGGCGTGAGTGTATCAACTCGCCGCTATTCAACGACCTCGAATGGCGCGGCGAGTGCGATGCCTGCATCATGTTCGGAGAACCCCCAGTAAATGAATCGGTACGTGGCTGGTGTGTGTGCCGTACACCGTTGGAACGGACCTGAAAATTCGTTAGCGCTAAGTGTCATTTCCCATCGGAATTCTTCACCAGGCTCCAGCACTCGCTGAGACGGTGACCACTCATATTCTTCGGGCACACCGATGGTATTCCGCCACGTGTCGTCAGAGCTTAACCGCTGAATCATATAGCGCGGTTTCCCAAGTGTGGTGAGTGGGTCAGTGGACTCGTTTGTGAGTGTCGCCACGAATTGCTCACCTGGCGAAATAGATTGTGGCACCGTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2102185-2103823 **** Predicted by CRISPRDetect 2.4 *** >NC_017941.2 Haloferax mediterranei ATCC 33500, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 2102185 30 100.0 54 .............................. CACGTCAGGTCGTGTGCCTTGCGCGTTGCGTTGACTTCCGAGCGCACGCTCTTG 2102269 30 100.0 34 .............................. GGACCCAAAACCCCAATCGAAGACGCGACAGTCG 2102333 30 100.0 36 .............................. GTGTACGAGGTCGCCCACGACCGTGCCGTCGATGGT 2102399 30 100.0 36 .............................. CACGGATGGACGGCTAAGACGTAGTCGCCTTCGACA 2102465 30 100.0 36 .............................. GCGGACGGTGGTTCGGAATGACTGACTCTGCTAAAT 2102531 30 100.0 35 .............................. GGAGGTACAAAACGAGTCACAAAATCTAACGTCGG 2102596 30 100.0 37 .............................. GGGGAGTGGGAGGTGTCGCAGACCCGACGGCCCGCCG 2102663 30 100.0 36 .............................. TTCGACGCGAAGGTCGTACACCTGCCCGATTTGGAC 2102729 30 100.0 35 .............................. GAAGATTATTGAGGGAGTAACGTATGAACCATCTA 2102794 30 100.0 38 .............................. CTTTGTCGGCGAGGACGAGCGCGCCGGCTTCGAGCGTC 2102862 30 100.0 38 .............................. GACCAGACCCATGTACTCCGCAGACCCGGCCTTCGCGT 2102930 30 100.0 35 .............................. CGCGAATGCAACAATCGGCGTTGCATGCATGACGT 2102995 30 100.0 37 .............................. TTGACGAGGGGACAATCCATGAAATCCATGTGAAATT 2103062 30 100.0 36 .............................. ACGGTCTCGAAATGTTGCCCGACCGGAACGCATATC 2103128 30 100.0 37 .............................. CGGTCCTCCGGCAGATTGGGGAGATTTATCCAGAGGT 2103195 30 100.0 38 .............................. ACACGGCATGGGGGGAAGGATTTGGGGGGGTTGTGAGA 2103263 30 100.0 34 .............................. GTCTGGAAGCTGGCCATGTTGTTCTACAACGCTT 2103327 30 100.0 36 .............................. TACGTTGGGGCAGACCCCAATTCCGGAGGGTCGCAG 2103393 30 100.0 34 .............................. CGTGACAGTCTTCGGGCCGGTCGACGACCAGGGC 2103457 30 100.0 35 .............................. TTCTGGACGCACCTTCTTCACGTCGTAAACCCCGG 2103522 30 100.0 34 .............................. AGCAGTCAAATACCGAACTCGCGCTTGAAAATCT 2103586 30 100.0 35 .............................. GCGGAAATCGTAGTCGAACCCACGCCCGACGACGA 2103651 30 100.0 36 .............................. GTGGACGGGGACGAGTCTATCACCATCGACAGCACC 2103717 30 100.0 47 .............................. GGGCGCGCCAGTGAATTTCGTCGTCATGTTACATTCAAGAGCAACAG 2103794 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================================== ================== 25 30 100.0 37 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : ATCACAGCGTACCACCGATATCTAAACGAAGCGGCTGCACTCCACTACAACGATGGGATGTTCGACGAGTTCCTCCGATACGGCGACCAAGACAACTACGCTGGTCCCGATGCCCTTTCGAGATGGTACCGGCGGAACCTCCGGATGATTCACAACATCTGGCGGGCCGTGGACGAAGACACTAACCGTGTTTGCTTCGTCGTCGGCTCCGGACACGTCCATATTCTCCGGCAACTCCTCACCGAGTTCCCGCAGTTCTGCCCCGTGAGTCCGCTTCCGTATCTGCCCCGTGGTGAGTAAGCGGGTGTTGAAGATGGTGACGAGTGGATAGTAGTTGACTCGGGAGGTTAGGTGTGGTTGGTGGGTTCGAAGGGGGTGTCCGGATTGGCCGGATAGGCATTTCCGTCGACCCCCCGGGGGGTTGAGGGGTATTGGAGGTCGACGGAAACACTTGAGTGCGAACCGCCTGTAGAGTACTTGTGGCACTCAAATCGGCCATG # Right flank : CTCTGGGTCGACCGGCATCAACAGCTCGGTCTACGGTTACAGACGAACGCCTCTGTTTAAATCCTCAGTAATTGATACAAACTGTGTGCTGAATATAGAGGGTGCATTCAGCAACTCCACGACTGGCTGTAGGAGACTCTGATGGAGAAGCACGACTGATCGTGCTGAAATCGGAGTAGGATACCAACCTCGGGTTATTTCAGGACGTGATACATTGCGAAACTGGGAATGCGGGTATTCAGATGGGTGGTTAACCGATACAGACAACTCGAAAATATGGCGTCACACCCTGCAGTAGCTGGAGGACCTGAGATTGCAGTTGACCTGACTATCGTACTGGGTCTTTGGTGCCTCTGGGTACTGATAAGTAGGGGTGTAGGTGCGGCTTTAGATTTCACTCCACTCATACTCATCCCACTTGGTACCGCTATTGCGTTTCTGCTCATTGATACAGTAGTTAGTCGGGTATTTTGACAGAGGCACGATGCAAACAGTGGACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 334378-333687 **** Predicted by CRISPRDetect 2.4 *** >NC_017944.1 Haloferax mediterranei ATCC 33500 plasmid pHM500, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 334377 30 100.0 35 .............................. AGTCACATGGGAATCCGGGCGCGACGGTCTCAACT 334312 30 100.0 37 .............................. CGGAACCGAGGGACGCCTCGGCACGCCCCCTGAGAAT 334245 30 100.0 35 .............................. AGGTCTCCCCCATCAACCGAGAGTGTTACGTCGGT 334180 30 100.0 35 .............................. CCGAACCGGGTGCCAGCTCATTTTGGAACACCCCC 334115 30 100.0 35 .............................. CTGCTCCCCATCGGGATTAATGAACTCGTTGGAGT 334050 30 100.0 36 .............................. TTCTTTATTCCGCCGCTCCGAACGTCCACGAATATC 333984 30 100.0 38 .............................. ATCCCGCCGAGAAGGTGGCAGGCGCGCAAGAACGCCTG 333916 30 100.0 36 .............................. CGACTGCCGGAGGACGTGAACGAGATCGTCCATGCA 333850 30 100.0 36 .............................. GACATCGTCGAGTCGCCTCTTGAGACCGCCGCTCAG 333784 30 96.7 38 .................G............ GTCGCGAACACGTGGCACGTCGTGCCAATCACGGCCGG 333716 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.4 36 GTTACAGACGAACCCTAATTGGGTTGAAGC # Left flank : GAGAGCCGTTTGTTCGTTTCATGGTGGTCCATGCGTAGCTAACCAAAAGCCATAGATGCGTAGACAGCAAATCCGGCTATGGTTGCTGCCCTACACTTGGCAGTGGCTTATTTGTCACGCCCTGCCCTCTTGCACAAGTTTGGGGCGTGACTCAGCTACGCACCAGTGACAACTATTCGCATTCTCTTAACTCTTACTAGCGTGTTGTATGAAATTGTATCAGTAGATCGGGAGCCAAACATGGCCAGAGAAACCACATAGAGCAACAAATCAAATGATATCCAGAATGTGATTCCAATACTCAATCCTTGAATGAACACCAGCCAAGTAGTACTCAAATGAAAGAATAACCAACTCAATTGGTCAGAGAAGACCGTTCGAGTTGGAAGCTCGCTTTCGCTTCCGTCGACCCCCCGGGGGTTCGGGGGTTATTGGAGGTCGACGGAAACTGTTGAGTGGGAGCAGTGTGTAGGGGGCTGTATGCCCCTGAATTGGGCATG # Right flank : GAGACCAAGGTCACGGACAGTGACGTTAGTCGTCGTTACAAAAGAACCACTATCGACAGGAACAGCAGCGAGAGCGCCCCCACTAGGAAATACCCAGTAGCGTCAAGTACACTCAACACAGCGATTGCTAACGCGATATAAGCCGGGTTCCGGGAAACACAGTATTACTAACCGGAACCAACACCGTCGCTCGAAATCCCTCAAAACGCCGACCGAAACCGACGACCGGAGTCGTCAGTTAGCCAGCGGGACCTGCATCTCGCGTTCGGCTTCGTCGTCCGCGTCCACAGTTCCCTCGGCGAAGACGACGCCGTGGGCACCTTCTCGTTCTTTGGCGCTCGCCGCGACGCGGACGAACGTCGCGTTGTCGCGCGCGGCGGAAATCGTGTGGCCGCCGCAGTAGCTGATTCCGGAGCGAACGCCGCCGAGGAACTCCTCGACGAGCGGTTCGACCGAACCTTTGTAGGGCGTGAGAGCTTCGACGCCCTCGCCGGTTGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAATTGGGTTGAAGC # Alternate repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 344522-346001 **** Predicted by CRISPRDetect 2.4 *** >NC_017944.1 Haloferax mediterranei ATCC 33500 plasmid pHM500, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 344522 30 100.0 35 .............................. ATCCGGTCCCAGTAGAGCGCGTAGACGCCGAGGGC 344587 30 100.0 37 .............................. CTTTGTCGGCGAGGACGAGCGCGCCGGCTTCGAGCGT 344654 30 100.0 35 .............................. GAGCTTGTCGAAGACGATTGGGTCGCTCACACTCC 344719 30 100.0 34 .............................. CGACAATATTCGACCAATTGGACATATGCATCCT 344783 30 100.0 37 .............................. GCCCGTTTAACTAATAATGTCATGGTTCGGAAAGCGG 344850 30 100.0 36 .............................. TCGACACGACAACACGACTCGATTCGCCGTACGACG 344916 30 100.0 36 .............................. TACACCGGACCCGAACTCGACGTGCACGTGAAGCCC 344982 30 100.0 36 .............................. TCTACCAACTGGTTGGGTGCTGCTCGGATATCTCTC 345048 30 100.0 34 .............................. GACCGGGACCCGTGATGCTCGACAAGGTTGTAGT 345112 30 100.0 36 .............................. ACGCTCGGTCCCGGCGAGACGGCGACGTTCGCGCCG 345178 30 100.0 36 .............................. TAAACGCATCTAATGAGTTATCAGACTCGTGGACTG 345244 30 100.0 39 .............................. ACCTCATAGCGCGGGTCCGCCCGTCTGGGTTGGCGTCTG 345313 30 100.0 38 .............................. CTTGACAACGGCTTTGACGGTCGGACAATGACCTATCC 345381 30 100.0 37 .............................. TGTCGTGACTGCGCCCACGTCATCACTATCGGTGATT 345448 30 100.0 34 .............................. CTCAAGAGGTGGCTCTAATGGGAATCAAGCAGTT 345512 30 100.0 38 .............................. AGCGTCGACGACGTGCTCGACCGACTGGAGTCTGACCC 345580 30 100.0 36 .............................. CGCGCACGGCATCCACGTCGACGAGCGGGACGCCCG 345646 30 100.0 38 .............................. ACGTCCTCGGTAGGATGTTTCGCCGCGAGACTCTGCAA 345714 30 100.0 34 .............................. GGGAACCGTTGAGGTCCTCGTCGATGATGCGAGC 345778 30 100.0 34 .............................. ATCGACCGGAACACGCGAACCACGCTCGGCGAGC 345842 30 100.0 35 .............................. ACTCCAACGAGTTCATTAATCCCGATGGGGAGGAG 345907 30 100.0 35 .............................. TTACAGACGATTCGGTCGACAGAACCCTATCGCCC 345972 30 80.0 0 ..........C.....T.CG..A.....T. | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 99.1 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : CTCGAACAGACCGTGGAGCATCCCCGACTGAATCGGAAGGTGAGCTATCAGTATCTCCTCAGAATTGAAGCGTACAAACTGAAAAAGCACCTCCTTACGGGAGAGGAATATGTACCCTTCAAGCGGTGGTGGTAACCCGTGGTGTACATTATCGTCGTGTACGACATGCGGGCCGACCGAACGCGATTGATGCTCAACTTCCTCAGAAAATACCTCACGCACGTACAGAACTCCGTCTTCGAGGGCGAGGTCACGGAGGGTGATCTGGAAACGATTCGGAACCATACGCAAACGTTACTGAACCCGGACGAATCGACGATTATCTACCGAATCGGGTCTGAGAAATACGTCGACCGAACTGTTATCGGAGAGGACCCAACTGACGAGTCACGGTTTCTGTAGCAGTCGACCCCCCGGGGGGTAGAGGGGTATTGGAGGTCGACGGAAACACTTGAGTGGGAACCGTCCGTAGAGCACTTGTGGCGCTTAAATCGGCCATG # Right flank : CCCGATTCCAAATGTGACAGGAGGAAATTCAGACCCATCGGTAAACTTTAAATTCCGTAGTCTGAATACTCTTCCAGTACATCTATCGTATAGAGTTTCGTTCTAAAAAACGACAGCCGGTCCAGATGGGTGTTTACTCCCCTTCTTTGACTTCGTAGATCTCGTCGGCGGTAAAGCCGTGCGCTTCCCGGTGGACTTTCTCGCCTGCCTCTTTGTTCGGCGCTTCAAAGAGGCAGAAGACCGCACCTTCGTCCTCGTCCAGCCAATACTTCTTGTAGTTCACCCCGTACTTGTCTTGAATTTCGAGGTCTTGCCTGTGCGCCTTAACTGCCTCCTCAGCGGTGAGCCCCTCTATGTCCCTGTGAACGTCCATGAATAATGGCATGGTTGTTGTAGTGTAGCACGTCTCACACCATAAATACACATTAATAATTGTATGAATGTAGTCACAGATATGACTGAGTTCATAATCCTACCACGGATTTGATGGCGGGCAGGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //