Array 1 581316-582564 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEKM01000001.1 Escherichia coli strain 2013-6-140D MOD1-EC3792_1_length_668651_cov_55.3212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 581316 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 581377 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 581438 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 581499 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 581560 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 581621 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 581682 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 581743 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 581804 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 581865 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 581926 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 581987 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 582048 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 582109 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 582170 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 582231 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 582292 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 582353 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 582414 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 582475 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 582536 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 608264-609270 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEKM01000001.1 Escherichia coli strain 2013-6-140D MOD1-EC3792_1_length_668651_cov_55.3212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 608264 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 608325 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 608386 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 608447 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 608508 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 608569 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 608630 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 608691 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 608752 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 608813 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 608874 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 608935 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 608996 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 609059 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 609120 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 609181 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 609242 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //