Array 1 73652-74534 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKUX010000017.1 Escherichia coli strain ZWEC154 Scaffold17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73652 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 73713 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 73774 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 73835 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 73896 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 73957 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 74018 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 74079 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 74140 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 74201 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 74262 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 74323 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 74384 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 74445 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 74506 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8963-10821 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKUX010000012.1 Escherichia coli strain ZWEC154 Scaffold12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8963 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 9024 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 9085 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 9146 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 9207 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 9268 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 9329 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 9390 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 9451 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 9512 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 9573 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 9634 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 9695 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 9756 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 9817 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 9878 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 9939 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 10000 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 10061 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 10122 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 10183 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 10244 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 10305 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 10366 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 10427 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 10488 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 10549 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 10610 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 10671 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 10732 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 10793 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //