Array 1 2723382-2725580 **** Predicted by CRISPRDetect 2.4 *** >NC_013202.1 Halomicrobium mukohataei DSM 12286, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2723382 30 100.0 37 .............................. TGCGTCGTCCGGTGGCCGTCAATAAATGTCGCAAGGG 2723449 30 100.0 35 .............................. TCCTACGACCTCGTCGGCGTCAACGGCTGGCCCGA 2723514 30 100.0 35 .............................. CACCCTACAACAGGTGAAATCTACCAGACAAAAGA 2723579 30 100.0 36 .............................. TCACCCAAGCGCAAGCAACAGCTGATCGAGGACCTG 2723645 30 100.0 36 .............................. GCGACGGCGGCCAGTTCCGCGAGGGCGGGAAGGTCC 2723711 30 100.0 36 .............................. TGCGAGTGTTGCGGGGAACCGACTCGGGTAGGCCAG 2723777 30 100.0 37 .............................. ACGGTTTCGCTACCACCATCGCCACCAGCAACTGCCG 2723844 30 100.0 33 .............................. GACGAGTATGCCAACCGGCTCGTGAGCGGGCGC 2723907 30 100.0 35 .............................. TGGTAGGCGTCGTAGGTGTTCGTGGCGAGCGTGTC 2723972 30 100.0 36 .............................. ACTCACTGGATTATGACCCCTACAACGAGGGCGTCA 2724038 30 100.0 37 .............................. GGATCTCGATCGTTGTAGTATCCATAGCTGCTATACC 2724105 30 100.0 37 .............................. GAAGTAACGCAACTCCAGTGAGCGCTACTGAGAGCCC 2724172 30 100.0 36 .............................. CCGATCACGCCCTGCCGATACTGGTAGTTCGCGATA 2724238 30 100.0 34 .............................. TCGTCGGCCGGCTCGTCGGCCGACGTGGACTTGC 2724302 30 100.0 37 .............................. AGTAGGTCTAATGTCTCTCTGTCGTCTATCAGCCCCG 2724369 30 100.0 36 .............................. GCTCTCCGGTGTCACAGGTCAGGTCACGGTCTCCGC 2724435 30 100.0 35 .............................. ACGGACAAGTCATCCACCCGCCAGTATCTCCCGGT 2724500 30 100.0 37 .............................. AAATACGATCCTGCGGTGACGCTACGTCCGGGGCAGC 2724567 30 100.0 36 .............................. CAGATGTGGGGTCTGTGGCCACAGTCTAACATCTCT 2724633 30 100.0 35 .............................. CCTGATAACGGACTCTTGTAGGTCCGTTAGGTCGT 2724698 30 100.0 36 .............................. AAAAATGAGTGACGTAGACATTCGGCAAAATGCCGG 2724764 30 100.0 35 .............................. CAGCAGCGAAACGAGCCGTCCGTCCTTTTGAGACA 2724829 30 100.0 38 .............................. GTCTAGCCCAGTCTGGTCGGGGTGGTCGGCAGGATCGG 2724897 30 100.0 35 .............................. CACTCCTCATATGTCTGTTCGAGCAGCGGGACGTG 2724962 30 100.0 37 .............................. ACCGTTGCCGCCGATCGGCAGCGAGCCGGTGATGTGT 2725029 30 100.0 35 .............................. TCAAAGCGAGCCTCGAACGCGACGACGAAGATATG 2725094 30 100.0 36 .............................. TCCTCCTTGTACCCACGGTCTTGCCGATCCATCCCG 2725160 30 96.7 37 ........T..................... GACTGGCGTGTTGCCGTTCAGGCCGGCGTTGATCCCG 2725227 30 100.0 35 .............................. CTCAGCAGCAGTCAACGGCATTTTATACACCTTGT 2725292 30 100.0 35 .............................. CACCCCTTCCGGGGAGACGAGGAAACCCCGGACGA 2725357 30 100.0 34 .............................. GTCACGCTGTCTGACGATATGGCTGACCAGGTGC 2725421 30 100.0 33 .............................. CACTCCTGGGCGGCCTCATCGGCGGCCATCGTC 2725484 30 96.7 36 .............T................ GTTGTGTGAGGTATGCGATGGACACCACCGATCACG 2725550 30 83.3 0 .......................CC.GCA. | C [2725575] ========== ====== ====== ====== ============================== ====================================== ================== 34 30 99.3 36 GTTTCAGACGGACCCTTGTGGGATTGAAGC # Left flank : GTAGTTGTCCGTGAACCCGCTGATGACCTCGTGAATGAATTGGGTTCGCTCCTCGGTTAGCACTCCGCGCCGGTATTTCGTGGTGAGTATCAGGTGGTAGTGCAGGGAAAACGTCGAGTGCGCTCCCGAGTCGAGGTCGTACTCCATTAGGTTCAGTCAATATGATACTACCCTATTGCAAAAACATTGTGATTACGTGGGCCTGTGGGCTTTCTATCGAATTGTGTATGAGAACTGTGCAGCGTTAACGAGATGCTCGCGTCTCGTTCGCACACCAGAATCTTTGATTCTGGGGACGCTGTATCCCCTCCCTGCTCGCGCCTCCTGTTCGGTCGGCGCTCGCTGAGGAAGGGGGCTTAGCGCCTCAATTCAGCTAATACTGCCGGCAGTACAACCCCACTTCCATCGACCCCCCGGGGGTTCGGGGGCTATCGAAGGTCGACGGAAACGATGAAGTGTGAACGGCGAATAGAGGTGCATACGTGGCCTAATCGGCCATG # Right flank : CTGTCGCTGGGGACGATCGGCTCACTTCTTTCGGATCGTCCCGCCGCCGAGCCCCTCCCACTCGACTCGGTATCCGAGCGCCGACAGGACGGCGCTGGCGTCGTCGAGCCCGTACTCGTCGAGGACCGCCTCGGCGGCCGACAGCGACATTCCGGTCTCGATCTCGTCGTCGACCGCCGACAGCACGGCCGGCCTGACCAGCGTCCGCCCGACGCGCTCGTGGTCGGGAACGGATCGGTCCTCGACAGCGGCCTCGCTGACGCCGTGTTCCGCGGCCAGTTCGGCGAGCGTGAGCACGTCGGCGTCGGGAGTGAGTGTCTGGGGGAGCGTCGCGGCGTTTGCCGCCGTCAGTTCCGACTCGTATCGGCCCAGTGCGTCGCGAACGTCTTTGATCCGGACGGTGCCCGAGTAGGGGATGGCTCGGTGGTCGCGGGCCTCGATCTCCGCGCCGATATCGCCGGACTCGGTCCGTGAGGCCGACTGCTGGTCGCCGACCGCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 34850-31920 **** Predicted by CRISPRDetect 2.4 *** >NC_013201.1 Halomicrobium mukohataei DSM 12286 plasmid pHmuk01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 34849 30 100.0 35 .............................. GAGTGAGTGATGGCTCCTGAAAAAAAGAAACGTGT 34784 30 100.0 35 .............................. GGCGAGTAGAGCATCGCCACCAGTGTACCCGGAGT 34719 30 100.0 38 .............................. AGTTACTGGTAACCCCTCTGACACCACGTCCGCAGCGC 34651 30 100.0 37 .............................. TGACTTCTGGAGCGCACGACGGAGGTCGTCGAGCGTA 34584 30 100.0 35 .............................. TGCCTTCTCAGTTTTCGCCTTCCAGTAGAAGTCTG 34519 30 100.0 36 .............................. AACATGAGCACGAACACTATCGACGCAGTCCGACGC 34453 30 100.0 35 .............................. TCCAGGGACGGCCCGTCCTCGATCGTCGGGTTGCG 34388 30 100.0 37 .............................. GGCCAAGCCCAGCCCATGAAATGTTGAAGACTCCATG 34321 30 100.0 35 .............................. GCGATCTCACCGAGCTGCGTGTCACCGGGACGTGG 34256 30 100.0 37 .............................. TACAAGCACACGCACGGCCTCGTGTGTGTGGTCGTCA 34189 30 100.0 39 .............................. CAGCTGGTCGCTGGTCTCCGTCGCGACCGAGCGCTTCGA 34120 30 100.0 36 .............................. TACGAGCTGATCACCTGGAAGGCAAAGCTGGGTCTC 34054 30 100.0 36 .............................. GCAGCTGCACTGGTAGCAGGCTACCTGATCATCTAA 33988 30 100.0 36 .............................. GAGTTGTGTGAACTCGCTTTGCGTCTCGGTCGTTTC 33922 30 100.0 35 .............................. GCGCCGCCGGCCCCGAGGGTGTCGGTGACGATCGT 33857 30 100.0 36 .............................. TGCGAGTGCTGCGGGGAACCGACTCGGGTAGGCCAG 33791 30 100.0 35 .............................. TTTGGACGCACCATGCTTGTGTGCCTCTTGATGAA 33726 30 100.0 35 .............................. AAGGTCAATATTGGCGTCAGAGGTAAGCACGTCGC 33661 30 100.0 36 .............................. AATCGTTAGCTCAAGACCCTCAGTGGGAAGGTCGTA 33595 30 100.0 35 .............................. CACTCTGACGGTGCGGTATCGCGTAGACAGATACT 33530 30 100.0 34 .............................. TCGCGGTTGATGACCGCTGATTGGAGAGATGCTC 33466 30 100.0 36 .............................. CGGATCGTCGTGTCGCTCATGTCCATCCGCTCCTCC 33400 30 100.0 36 .............................. GCAGTGGTGGTCGTCACGGGCGTCCCGGACGTATCG 33334 30 100.0 37 .............................. CTGACTTTCCGGGGTGGCCCAAAGTCCGCTCGAAGTG 33267 30 100.0 37 .............................. CTCATGGGAGGGCGGGGGCAGCTTATCCGCGAGATCT 33200 30 100.0 35 .............................. CGATACGCTCGGTCAATAGAGCGCGTTGAAGCGTT 33135 30 100.0 37 .............................. GACCCCGAGATGCACGGCCACGCGGCCGTCGAGATCC 33068 30 100.0 36 .............................. GCGATTCGCGAGCTGCCAGCATCTTCGACCGTGTCG 33002 30 100.0 35 .............................. CAGCCCGTAGCGGTCGGCGGCCTGCCGCTCGACGA 32937 30 100.0 36 .............................. ACACGCTTCAAGCTGTTCGTCCGACAACTCGCCTGA 32871 30 100.0 35 .............................. GGTCGGATTGCACTCCCGATCATTGCACAAGGGCT 32806 30 100.0 35 .............................. ACGCCGAGTGGGATCGCTACGAGCTCAACAGCATC 32741 30 100.0 35 .............................. ACAGCCCGGACGCCGTTGATGATCGAGGCGTACTT 32676 30 100.0 38 .............................. CCATCGCCGTCCTCGGTCCGGTTGCCGACGTAGAAGCC 32608 30 96.7 36 ..............G............... TCGAACTGGAGGGCGCGGGCGGTCGTGGTCTTCCCG 32542 30 100.0 35 .............................. AGCCATGCGGTTAGTCAGGCGCTTCTGAATGTCCG 32477 30 100.0 36 .............................. CCTCTCCTCTCGGAGGGTGATCGGCTGGATTTCCGT 32411 30 100.0 36 .............................. ATCACACGGACTCGGTGTTTCGCTAGCTCACGCAAC 32345 30 100.0 37 .............................. TCTTCTCTCCAGATCACCCACGCAGCGGCCCCTCCGG 32278 30 100.0 34 .............................. AGACAGCACCCGGCCCCGTCGTCTCGGTCCCCGA 32214 30 100.0 35 .............................. AGTATCAGCGAACGAGTTCGCGCCGATCTCGTCGA 32149 30 100.0 37 .............................. CCGTATCCGGATCGTTCGTCACTTCATATTCCGGATC 32082 30 93.3 37 ....T............A............ GATGTCGATTTTTCCGTATGACATTGTTTTAGATCTG 32015 30 100.0 36 .............................. GGAAGATGCACAGCTAGAGAGGGAACACGTCTCGGA 31949 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 45 30 99.8 36 GTTTCAGACGGACCCTTGTGGGATTGAAGC # Left flank : GAAGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACTGATGGACTCCAAGCCTATCGAGAGATGGAGCGTGACCATCGGACAGTCGTGCACAAAGAGCGGTATGTATCGCTCGACGGCGTCCATATTAACCAGGCTGAGTGCTGTTTTCGCTCGTCCAGCCGTGGCTGCGGAAGTTCCGCGGCCTGTCCAAGCAGGGCTTGGAGCAGGCCGCTCACACCTTCGGCATCGTTCGGTTACTCACTCTAGCTGGGGAACCCACCGAGTCAATGATTGACTGCCTCGCTATCGGGGCTTTCCGCAGTTCTACATAAGAGCGAGACGGTCGAAGAGACCCCTCTGTCGCCGACTTCTCGCCACGTCGGTGGTGTCTCGCCTGCGTACTGACCGAGGAAGTTCGCGTTTCCATCGACCCCCGGGGGGTTCGAGGGGTATCGAGGGTCGACGGAAACGATGAAGTGCAAACGGCAAGTAGCAGTGTATACGTGGTCAAATCGACCATG # Right flank : AAGAAGCCTCGACGAGACGAATCGTCGCCGGACTGGTTTCAGACGGCAAACTGAGATCGAAGCTAGACGGTATCGTCCGGCGACTTCCACAGGGCTTCCAGATCGTCTCGCAGATACCGGATCGATTCGTACCGATCCCGTTTTGCCGTCGCCAGCGCCGTGCGTACGATCTCGTCGAGTTCGGGCGGCACGTCGTCACGATCGGCACTCGGGGCTGGCGGTGGCCCGTCGTCGCGGACGATTCGCTTGCGGACGGCGAGGCGGCCGCCGCTCACGGGTGGCTCGCCGCGTAGCATCGCGTACAGCACAGCGCCGACCTGGTAGATGTCCGTGACGGCGTCCGGTTCGCCGAAGGTCTCGGCGTCGAACTGTTCGGGCGCGGCGAAGTGTCGGGAGAAGCCTTCCATCGAGTCGGCTCGGTCCAGCAGCTTTCTCGCGAGGCCCCAGTCGGCGAGCTTCGGCAGGTCCCAGCGTGACGGTGTCGTTTCGGTGAAGAGGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //