Array 1 130364-128144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTDM01000014.1 Thauera sp. SWB20 PO78.SWB_20._Contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 130363 37 100.0 33 ..................................... AACACACGCTGATCCACGAGTTGTCCGCGGCGC 130293 37 100.0 34 ..................................... GGCGGCTTTCGAACTGCGTTTCGACCAGGTTGTT 130222 37 100.0 34 ..................................... TGGTCGCTGGTGCCGTATTTCTCGGGGCTCATTC 130151 37 100.0 32 ..................................... CCCAGAACCTCGAAGACGAGGTTGGGCGAGAA 130082 37 100.0 33 ..................................... CGAAGGCCGGACACACAGGCATCGGTGGCGTGG 130012 37 100.0 32 ..................................... TCTCCGGTTCGTGATGCGTCACCGTCACGCAC 129943 37 100.0 34 ..................................... TGGGCCTTCTCGACACCGTTGAGGACGCGATAGA 129872 37 100.0 31 ..................................... GCGGCGCAGGGTGGTCTTGCCGCTGCCCGAC 129804 37 100.0 33 ..................................... CGAAGGCCGGACACACAGGCATCGGTGGCGTGG 129734 37 100.0 34 ..................................... GCTCGTTTCGTCCGTCAATTTCGACGCTGTTGCT 129663 37 100.0 32 ..................................... GTCCACGATGTCAGTACCCACCAGCACGAGGA 129594 37 100.0 35 ..................................... ATTTGTCGCATTCTTCGTCGGATCAGGAACGATTC 129522 37 100.0 34 ..................................... ATACCCCTTTACTCCGACATAGGTCGGCATGGTC 129451 37 100.0 34 ..................................... CAATTATCCGGGTCGGTTATGGCATTTTCTCGCC 129380 37 100.0 32 ..................................... TGCCTTCGGCGCTTCCTCAACCTCTTCAGTCT 129311 37 100.0 33 ..................................... GGTCTCGTCTCGAAACCTTTGCGGCATGCGGTT 129241 37 100.0 33 ..................................... TGCACGCTGCCTGCGCCCCATCTCGAATCAGCT 129171 37 100.0 34 ..................................... GCGAGATCGACCGTGCGGGTGAAGGAACCGATGG 129100 37 100.0 32 ..................................... CTCAATACTCCTGAAAGTCTCAAGACTCGTCT 129031 37 100.0 34 ..................................... ACTTGCAGCGTCGTCGGGTCGCCGACGAGGAAGT 128960 37 100.0 36 ..................................... GCCTTGTCTTCAGCAGCTTTGATCGCGTCAAGCGCC 128887 37 100.0 34 ..................................... CCTGATTTGCCTCCCATTTCGCCAGATCCGCGGC 128816 37 100.0 33 ..................................... AGCTTACGCTCCATCCGTTTGTTGCCCGCATAG 128746 37 100.0 35 ..................................... CGTGGTGCCTCTTGAGGGCGTGGAAAATACGATTG 128674 37 100.0 35 ..................................... CATGATCCTGAGCGCATTGTCACGCAACACCTTTT 128602 37 100.0 31 ..................................... CATTCACCGATGAATGCTTATGAACGATCCT 128534 37 100.0 35 ..................................... GGGCATCCTGTCGGTCAGCTTGATCCATTCCATGA 128462 37 100.0 32 ..................................... CCATGAAGTAGGCGCGGCGCATCTTCGGGATG 128393 37 100.0 33 ..................................... CAGGTGGCGTGACCGGTCTGGAAGCGCGTGGCA 128323 37 97.3 36 ....A................................ TGCGCGCTTGAGCCGCGTCTTGTGCGCGTGCGTAGC 128250 37 100.0 33 ..................................... CCCATGAGGCCGCCGCCTTCGCAGATCTGCTGC 128180 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ==================================== ================== 32 37 99.8 33 GTCCGGACTGATGCCCTGATATCAAAGGGATTGAGAC # Left flank : GCGCCTCGGTGCGCTCGAGCAGGCGCAGGCTCAGCTCGTCGGTCAGCTCGCGCAGCTCGGCCGCGCGGGCATCGAGCCGTTGGCGCATCCACACGCTGCCGGGCACCTTGGCGAGCCCGAGCGCTTCCTTGAAGAAGCGGTCGCCGCGAAACGGCTCGATCGCCTCGAAGTCGCTCTTGCCCAGGCTCAGCAGCCCGACCACCGACTTGACCAGATCCGAGCTCAGCATGCCCTGCGACACTGGCAGCCTCGGGTCGATCACCGCCTGAACCTGTGCCGCCTGGCAGCACTGCCCGATCAGCGCCAGGCCCGAGTACGAGGTCAGGTTGAGCTTGGCGGATTGCTTGACTTCGAAGCGCGGCATGGTCGGTTGGGTGAATGAGTCGGATGCGTAATTGTACAATTACATCAATGCGTTAGGCTGGATTTCCGGCTAAACGAACACGGATTCAGGAAAGGGATTGAGACTCACGCATGGCCTGGAACGCGCCCGGATCCAC # Right flank : GCGGCCGCTCCCGCCAACGCATGGGGTTTCCGTGCGTTGCAGCGCACGACCACGGCGCGGGGCGGTGCGGCACCTCGAAGGCCGCGCCGTATACCAGCGCACCCGGGCGCGCTACCAGACGACCAACATCCGGTACAGGAAGTAGCCGAGCGCCATGTAGAGCGGCACGGCGACGATGACGAAGACCACGAGGTAGACCACGCCGATCAGGAGGGGCAGAAGCGCCGCGACAAGTCCGCTCCAAAGCAGCTCGAGCAGGGCCAGCAGCAACGCGACCGCGCCGCGACGAAGCCAGCCGAGCCTCCGGCGCCAACCGGTGGTGGGCCGCCCATCCAGTTGGGCCTTGGCGTCGAGCAAGCTCTCCCTGGCGCGGAAGGTTTCCATGCGCAGCATGAAACCGGTCCAGGCTGCGTCGGCCAGGAGGCTGCTGGTGCCTCGACTGCGGCGCACCGCGCCCAGCAAGCCCGCGGGCGCCTGAGCTCGGCGATTCGATCTGTTAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGGACTGATGCCCTGATATCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 133815-132096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTDM01000014.1 Thauera sp. SWB20 PO78.SWB_20._Contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 133814 37 100.0 32 ..................................... GCGGCGTGCGCCGCAAATCCATCGGCTTTGAC 133745 37 100.0 29 ..................................... GCTGCCCGAAGGTTCGTTCATGGACCCGG 133679 37 100.0 33 ..................................... ACAACCACCCGAGCGGGGCGGCCGAGCAGAGCT 133609 37 100.0 34 ..................................... CGGGCGGCCGTCTTCATCCCGAACGTACGTCACT 133538 37 100.0 33 ..................................... TCAGAAACCAGTTAGTAATGCGCGGCGGATGCA 133468 37 100.0 31 ..................................... AGCCATCCGGGCAGCAAGCGGACAGGCCAAC 133400 37 100.0 32 ..................................... GGTCTTGGCGGTGAGGGTGTTGTGGTCGATGT 133331 37 100.0 34 ..................................... GGGTCGCACACGACCACTTGGCCGGTTCCCGCGT 133260 37 100.0 33 ..................................... CAGCGATCAAGAACGGAGCGATCAACGTCGGTC 133190 37 100.0 33 ..................................... AAACTGGCGATGATCGATATCTTCAGCCATCAA 133120 37 100.0 33 ..................................... CCAGCTTGAACATCGACTCGCCGGGCGCTCCTT 133050 37 100.0 34 ..................................... TTCGTTGAAAAACGACACCTCTGTCGGAGGTGTC 132979 37 100.0 34 ..................................... GCCCAAGCCCCAAGCGGGGCTCCTTCCACGAAGC 132908 37 100.0 31 ..................................... CCTCCACCGCAGCAGGCTGGGCGAGCTTGTC 132840 37 100.0 31 ..................................... CTCGGGTTCGAGCGAAGTGGAGCTGCTTGGG 132772 37 100.0 36 ..................................... GTCATCAATGATGACGTCCTTGACGCTCTGCGCTGG 132699 37 100.0 35 ..................................... TCATCTTTTGGGTAAAGCTGCGCATGGTGACTCTC 132627 37 100.0 33 ..................................... ACGATCCTACTGTGGGCCTTTGCTCACCATCGC 132557 37 100.0 34 ..................................... GGCCCGACATGGTTAGCGGGTGGCGAGGTATTGA 132486 37 100.0 33 ..................................... GTTGCCCGAGGCTGCGAGCTGGCTGCCGTTGCC 132416 37 100.0 36 ..................................... ATTTCGGCGGGGCAAACACCGTTCAGCCCAATCTTT 132343 37 100.0 34 ..................................... ATGCTCGCGCACGAAAGATGCAACGTCTTTACGC 132272 37 100.0 34 ..................................... AGTTGCAGGGTAAAGGAGCTCATCAGGAGTGTAG 132201 37 100.0 33 ..................................... TCTTAAAGCGCACGATGATGAGGCGCTCGCTTG 132131 36 86.5 0 ............................CC.-..AT. | ========== ====== ====== ====== ===================================== ==================================== ================== 25 37 99.5 33 GTCCGGACTGATGCCCTGATATCAAAGGGATTGAGAC # Left flank : GCTGCACCACCTTGGCGACCTCAAGCGCCACCTCGCACGGGAGGTCGAGACATGGCACTGAACACGCCGCGCGGCTGGCTCATCACCTACGACATCACCAACCCCAGGCGCCTGGTCCGCCTGCATCGCTTCCTGGTCAGGCAGGCCACCCCGGTGCAGTACTCGGTCTTCCATTTCGAGGGCAGCGCCGCGCAGATGGGTCGCCTGATGGCCGACATCGAAACCCGCATCGACGCCGGCACTGACGACGTCCGCGCCTATCAACTGCCGGAGCCCCTGAGCATCGACACCATCGGCCGCGGCAGCCTGCCCGGCGACACCTTCCTGCTGTCGCCCACTTCGCCAGCCCTGCAAGTGCTGCTTCAGGCCGCGGGCCGGTGATACCATCTCGGCACTGAACCGCGCAGACACGACCGTGACAATCCGCTCTCCCGGGCTCGACGTTTCTTGGGAGCCCCCTCACCAAGAAGCTGATTGCAAAGTCGTTTTTCGTGCGAGCA # Right flank : CGTGTTCTCTACAGCGCATACCCGCTCCGCGAGCCCCAGCGCATGATTCTTCTGCTGCCTGACTCCCAATCTCAGCTCACCGCAGCCCCGAGCGCCGTCCTTTCATGGCCCGGAGCGCCGGCGAGCCGGGCTTCCGGCGGGTGCGCTATGTCATTTCCCTTCTCCCGCGCGGCCGTCGCCCTTCCGCCGCAGCGAAATGGCCTCGATTCGGAGAATTCGGCCGCCGGATTTGCATCACGGCGAAGCCACCGCGCACAGTCGCGCCTGCACCGTGGTGAACACCTTCACATGCGCGGCCACGCCGCGCCCGAAGTCCAGCACCAGGCGCCGGGCGTGTTCGACGAACTTCGCCGCGCGGTACATCACCTCCTGCAGCACCGTCTTGATGCGCCGGCGCTTGGCCGGGTGGCGGATCGGCGAGAGCTCGCCGGCCAGCCCGAGCTGGCCGATCAGGCGCAGGCAGTTGTAGGCGAATGCGGCCAGATGCACGACCGCGTCGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGGACTGATGCCCTGATATCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 276156-276319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTDM01000019.1 Thauera sp. SWB20 PO78.SWB_20._Contig49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================= ================== 276156 23 100.0 46 ....................... CGGGCAGCGTGGGCGCCTACGCGTACCGCCGCGCTCGCGGGCGAGC 276225 23 100.0 49 ....................... TGCGGCTGTCGTCGCTCCTGCGAGAAATCCGTAACGCCCCGGGTGGAAT 276297 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ================================================= ================== 3 23 100.0 52 GTAGGAGCGACGCAAGTCGCGAT # Left flank : GGCGCAGGCGGTGCCGGGGCCGCTGTTCACCTTTGCCGCCTTCCTCGGTGCCGCGGCGCAGGACGGCTATGGCGGATGGGTGGGCGGAATCGTGTGCCTGCTCGCGGTGTTCGCGCCGTCCTTCCTGCTGGTGGCGGGCGCGCTGCCCTTCTGGGAGCGCCTGCGCGGGGATGCGCGCATGCAGGCCGCGCTCGCCGGCATCAACGCGGCGGTGGTGGGGCTGCTGCTGGCTGCGCTGTACCAGCCGGTGTGGACCAGCGCGATCCACCGCCCGCAGGATTTCGCGCTCGGCCTGGTGGCGCTGGTCGCGCTGATGTCGTGGAAGTGGCCGCCCTGGCTGGTGGTGGCGGCGTGCGGGGTGGCGGGCGGGGTGCTGGGGGGGCTGGCCGCGTAGCGCGGGACCGAGAGCCCGATCGCGACTTGCGTCGCTCCCACGAGAGGCCCGCAACGCCCGGGGTGGAGTCGTTCCCACGAGAAGCCCGCAACGCCCGAGGTGGAAT # Right flank : TCGCGGCGGTGGAAGGCGCGCGGCGACGATCGCGCGCGCAAACGCTCGCCGCCGTCCTGCGCGGCCCCGGCGGTCTCCTCAGCCCTTGGCGTCTTCCTCCAGCATGCGCTTGAGGTAATCCGGCACGCCCGACAGCACCAGGGTGTCGGTGGCGCGGTCGTAGTGCACGGCGCCGGAATGCAGGCCGCTGCGCTCGAACTCCAGCTTCCAGTTCTCCGCGCTGGCGCTGAAGCGTACCAGCGGGCGGATGGCGCGCCGGTTGGGCACGAAGCCGGGGGCGATCTTCGTCTCCTCGGCGCGCAGCAGCGCGTCCAGGCGCTCGGGCTGTTCGGGGAAGACCTCGCGCGCGAGCTCCTCGAACACCACCGGGGCGCCGGCCTCGCCGAGGGTGTCGAGGTAGTCGTGGGCGCGTTCGAGCACGGCGTCGCGGGTGGCGGGGGCGAGGCGCTCGGTGTCGACGAAGCGGTCGAGGGTGGCGACCAGCTTCTTGGTCTCCTGCA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGAGCGACGCAAGTCGCGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 85090-84635 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTDM01000018.1 Thauera sp. SWB20 PO78.SWB_20._Contig48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 85089 28 100.0 33 ............................ GCCCGAGGTAGTCCTGGATGAGGCGGGTATCGG 85028 28 100.0 33 ............................ GTGAAGACCTTCGGGGCCTTTGGCCCCTGCGCC 84967 28 96.4 33 ...............T............ TGCAGGCGCCTTGCCGTGGGCGACCCGGATCAA 84906 28 100.0 33 ............................ CGGAGAAGCGCCAGCCGTTCGGCAACCGCTCAC 84845 28 96.4 33 ...........................A GTCAGCCGCGACGATGGGAGGCGCGGCATTGCC 84784 28 100.0 33 ............................ CGGACCAGCCGTGCGGACAGTCCTCGCCGCTTC 84723 28 100.0 33 ............................ CAAGAGCGCCAAGCAGCCATCGCCGCTGCCTGC 84662 28 92.9 0 ......A...................T. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.2 33 CTTCGACCCCTGTTCGCACAGGGAGACC # Left flank : CCGCGACCGGGCCGACGCCGAGAACGCCTTCGACGAGCTCAAGAACCAGTGGGGCTGGGGCGGCTTCACCACGCACGATCTGCATCGTTGCCAACTGTCGGCGCGTGCCGTGGCGCTGATCTACAACTGGTGGAGTCTGTTCGTGCGTCTGGCCAACCCCGAAGCCCGACTCGAGGCCATCACCAGCCGGCCCTGGTTGATGTCCTCGGTCGGTCGGCGCACCGAGCATGCGGGCCAGACCACGATCACGCTCACCGGACAGCATGCCTACTTCGACAAGGCCCGGCAGGTGCTCATGCGTATCTCCGGCCAGCTCCAGGCGTGGGCGAGAGATGCTGCGGAGCAGTTGAATGCCGGATCGGTGTGGATGCGCTGCTGCGAGCATCTCAAGCGCACCCTTGCGGCCATCGGGCCGTCCCAGACGCCCCGCTTGCTGACTGATCATGCAAACGGCGTGGGGTAACTGAGGCTTTTAGGTTCAACACGTTGTCGCGGCCAGC # Right flank : TGTTTCTGCACAATATATTCGTAACAGGCAACCCAGCATTCGTGCGGCTTCTGCGACCCCACTTTTCCGGATTATCTTCGAAATTATCGTAACGCAGGACCCCCGTTAGGCCTTCAATAGAACGCGAGTGGCAATATATTCGTAACACCGCGTGCCGTGATTCCAAACTCCGATGGCACACGCAACGACCGCGAGGGACATGCTTCATCGGTTGGACTTTCGCTCTTGGCTTCACCTCTGACGTCGCGATGATGTGGGGCTCCTACTCGGCCATTACGGCCGGCCACGCCCCGTCAGATGAGAGGCTGCGGTACGGCGTAGACCTAGCGGCCACCGCTTGCGACGTCTGAACGACTAACAACTAGGGCACTCATTCTCCCGTCGAGCGTGGCATCTTGCCCTGCAGGTTGTTGACCCAACGGTAACGGACTGGGTCCTCGCGTAGCAGGAATGCCTTGATTTCTTCGCGCCTTGCCGGATCTGCGCGAAGGAAGATGCCG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCGACCCCTGTTCGCACAGGGAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 86775-87108 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTDM01000018.1 Thauera sp. SWB20 PO78.SWB_20._Contig48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 86775 30 96.7 31 .....................A........ ATGGCGTCATGCCGAGTCTTCGCGTTACGTT 86836 30 100.0 31 .............................. GAAACCACTTTTGCTATGGGGCGACCGTTAG 86897 30 100.0 31 .............................. TCAGGCTAGGCGCGCTCACCGGGGCAATCTC 86958 29 93.3 31 ......................-....G.. AAAGCCTCGTCCCCCTCCTGCACGACCGGGG 87018 30 96.7 31 ..........T................... TAAAGCGTGTTCGGGGAGCGCTCGCACAGCT 87079 30 93.3 0 T......T...................... | ========== ====== ====== ====== ============================== =============================== ================== 6 30 96.7 31 CGGTCTCCCTGTGCGAACAGGGGTCGAAGG # Left flank : CCACGCCTGCCTCTTCCGGGATCGCCAGCAGCGCCCGGCGCAGCGCGTCCTCGCTGATCACCTTGTCCATCCCCAGGAGCCCCGGATTGACCCCGTCACAGCGAATCGTCGTCACGTGCGAGTAGCGCCGGTGCCCCGACAGGATCGACAGCATCCACGTCCCCAGCACCTCGGCCTTGCTCGGCGCGTTCGGGCTCGTGTAGGACAGCGGGCACCGCTCCTGCCAGCCCGACCACAGACCGGTCAGGGTCAGAAACTCGATGAAGTACGCCAGTTGCCCCATCGGCGTGGCTGCTCCGTCCGCTTCCCAGCGCACCTGCACGCGACCGCCCGCCGTCTGCACCCCGGCGCACGACAAAAGCATTTCCTCAGCGTGCAAACGCTTCAATTTCGACTCACCCATCGGGTGACTTCCTCGATCAACGCCAAACCCGTAGCCTGCCAGCGTTTCGGACGCGCTGCACCTCATCAACTGAGGTTCTTAGGTTGAACCGAATTCT # Right flank : GATGGGCGACTAACCAGGGGTCGTCTCAGAAAACGGAAAATAAAGCACGCTAAGCCGGTTGCAGCGGCCGTAGCGGCCTGAACTTGCCCGCGCCGATCTTGGCGCTGCTGCGCCAGAGGTAATCGCCGGTCAGGTTGATGTGCTCCCAGCCGAGCGGCGACAGGTACTGCAACAGGCCGTCATCGACGGCTTGACCGTGGCCACGCAAGGCGTTCGCGGCCCGTTCCAGATAAACCGTGTTCCACAGCACGATGGCTGCCGTCACCAGGTTGAGGCCGCTGGCCCGGTAGCGTTGCTGCTCGAAACTGCGGTCGCGGATTTCGCCCAGGCGGTTGAAGAACACGGCACGGGCCAGCGCGTTGCGGGCCTCGCCCTTGTTCAGTCCGGCATGCACACGGCGGCGCAGCTCGACGCTTTGCAACCAGTCTAGGATGAACAGCGTGCGCTCGATGCGGCCCAACTCGCGCAGGGCGACGGCCAGACCATTCTGGCGCGGATAG # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCTCCCTGTGCGAACAGGGGTCGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 105568-104685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTDM01000018.1 Thauera sp. SWB20 PO78.SWB_20._Contig48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 105567 27 92.9 33 .........-.A................ GATATTCTCGACCGTGATGTACTCTTCAGACTC 105507 28 96.4 33 ................T........... AAAAGTTGTCCTTTTTTAGCGTAGGTATACCAA 105446 28 100.0 33 ............................ CGCTACCGTCGGTCGGCTGTCAGCCTCTCCAGC 105385 28 96.4 33 .......................G.... CTCACACTCACCGGCCGCATCGTCTCGGTTGCC 105324 28 96.4 33 .......................G.... ACTGCCCGTCTGGGTTACCCCTGGTACGTCACC 105263 28 100.0 33 ............................ CCAGCACGGCTTTGGAGACGGCCAAGCCCCAAC 105202 28 100.0 33 ............................ GGGCGGGCTTCTCCTCAGTCGAGGCGAGGCTAC 105141 28 100.0 33 ............................ ATGGGGCGCGGCAAGGCGGACCGATAGTTGACT 105080 28 100.0 33 ............................ TCGGGTTTGCGGTAATTGAAGCCGTCGGCTAAC 105019 28 100.0 33 ............................ TTGGACAAACTCGGCTGCCGGCGGCCCCTTTGC 104958 28 100.0 34 ............................ CTGTCTCCCCGGGAGACAAAGCCCAGTCGTCACC 104896 28 100.0 33 ............................ TTACCCGCGGCCAGCTCATACTGAGCACCCCAG 104835 28 100.0 33 ............................ TTGCTCGAGTCGATGATCTACGGCGCGTCGCAG 104774 28 100.0 33 ............................ GCAGCGCTCTCAAACCACAGCAGCCAGGCTTCC 104713 28 89.3 0 .......GA..............G.... | G [104704] ========== ====== ====== ====== ============================ ================================== ================== 15 28 98.1 33 CTTCGACCCCTGTTCGCACAGGGAGACC # Left flank : GCAGGGGGCTGCGCGCGCGCGCCGACGCTCGTACCGGCCATAAAGCACGAAAGCGACCACGCGGGTCGCTTTCGCATCCAGCTCGGCCGGCCGCGGGCCGGCTATTTCTGCACAATATATTCGTAACAGGCAACCCAGCATTCATGCGGCTTCTGCGACGCCACTTTTCCGGGTTATCCTCGAAATTATCGTAATACAGGACCCCCGTTAGGCCATCAATAGAACGCGAGTGGCAATATATTCGTAACACCGCGTGCCGTGATTCCGAACTCCGATGGCACACGCAACGACAGCGAGGGTATGCTTCATCGGTTGGACTTGCGCTCTTGGCTTCACCTCGGATGTCGCGATGATGTGGGGCTCCTACTCGGCCGGTGCGGTCATCCGGCCCGCAGCACCCTTACCCATATGGGATGACCGTTTCCGCGGTTCCCCGACTTCCGTTAGCGACCCTCAACAGGGATACCGCCTTCGACGCGCTGATGCAGGACGAGACAACC # Right flank : TCTATTTCCTAAAGTGCGGGCTCCTGACGCGCACCAGGCCATCGTCGACGCGGTAGAGGAAAGTCGGCCTCTGATCTGGCACTGCGGCCCTTTTAGCATGCTGCCAGACCTGTTGATGCAGAAGATACAGATCTGCGGGGGTGTCTGGGAGTGCGATCAGGATTTCTCGAACGGATCGGGTTGTACTCAGCATGGCAATCTCGTGGGAGAAACCGACACGTCAGAACGGCGCCCAGCAATAGCCCGTCGGTTTCCAGTACGGGGGCTGGATGCTTCCCACGATCGCGGGGCAAGCCTCAAAAGGTTGGGGCGCTGCTTGCGCCGGTTTCTATCACCCTGCTCGCACAGGGAGACCTGGATGGGCGAACCACCCGGACCGAGGACTACCCTTCGACCCCTGTTCGCACAGGGAGACCAGAGCGTGCTGGAACTGATCAAGTTCGCTGAGGCTTCGACCCCTGTTCGCACAGGGAGACCATCCAGCCAGGCCGACGTGGTTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCGACCCCTGTTCGCACAGGGAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //