Array 1 405019-403186 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRVI01000002.1 Paenibacillus ihbetae strain IHBB 9951 contig_seqid2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 405018 32 100.0 33 ................................ TTCACCTCACTTAAAAAGAAATGCCGCCCCCGA 404953 32 100.0 36 ................................ ACATTAACCCGGATAAATGTAACAACAAGTCGTCAG 404885 32 100.0 34 ................................ TTGGTTGTCCTGTTGGAGAGAAGGAGAAGCCAGC 404819 32 100.0 33 ................................ AAAACCAATGCTGTACACAATGGTAAACGAAGG 404754 32 100.0 34 ................................ GTATTCGCGCCCATCTTAAGAGCGAGCGCCTCCA 404688 32 100.0 35 ................................ TTTGGTTTGTATCCCTGCATGTTGTTCGCGAAGTC 404621 32 100.0 35 ................................ TAACTCCTCAACTGTCTTTTGTGTCTTAGGTACAT 404554 32 100.0 34 ................................ ACCCTAGAAGTCGGTGTAACGGTCGGACAAGTTC 404488 32 100.0 35 ................................ TTGGAAAGCTTGAGTGATGAACTGAAAAAGGTTTT 404421 32 100.0 37 ................................ AAGTGGAACTCGGAGAATGCGCGAATGAATGGCGAGG 404352 32 100.0 36 ................................ CATCTCAGCTCACCCTTTCGATTTATCTCGCACACC 404284 32 100.0 35 ................................ ATCGGCGGAAGGATACAAATAGGGAATAACTTTAG 404217 32 100.0 34 ................................ TATATTGATGAGCTTACCAAGCACACGACCGAAG 404151 32 100.0 34 ................................ TCGAAGGGCTGGCGCATATCACATACCGCGACAA 404085 32 100.0 35 ................................ TGATTACGGAGACGGACAAATATCCAGTGTATGGC 404018 32 100.0 34 ................................ ATTCGGTATGAGGACATGCGGATTCCGGTCGAGG 403952 32 100.0 34 ................................ ATGGTCGTTATCGGCGGTGACGCAACGTCTGACG 403886 32 100.0 35 ................................ CCATACAATACAGATAAAGTCGCAAATCATTTACA 403819 32 100.0 35 ................................ CGATCAATGTATTACCCTCCCATATTTCTCGATAA 403752 32 100.0 34 ................................ TTGGAGGTACGGATGCATTTATGTCAGGTGATGG 403686 32 100.0 33 ................................ ACGCTCTCTCTCGCTTAGTGTAGACAGCGCGTC 403621 32 100.0 35 ................................ CCCCCGCTGATTGGCGGCTGAAAAACGTGGTTGTA 403554 32 100.0 33 ................................ GATGGACAGTCAGGAATCGTGGGCGGTATTACG 403489 32 100.0 35 ................................ TTACCCCGTGCGACATCGCCTGGTGTAGCATCCCC 403422 32 100.0 33 ................................ ACGGGTAATTGGCGCGCCCGGACGGCTCCCGTC 403357 32 100.0 38 ................................ CCATGCAAAAGCAGCTGGATCTTCTGTTCCAACGGGAG 403287 32 96.9 38 ..............A................. ATGTCCTTTCAGCAGCCTCCAGCCTGCCATGCTTCCGC 403217 32 75.0 0 ..T..........T......T...T..AGGC. | ========== ====== ====== ====== ================================ ====================================== ================== 28 32 99.0 35 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CCATTTTTGTGGAAGTAGGTGGTCCCTTTGTTGATCTTGATTACTTATGATGTAAGCACGACCGACAGCGAAGGTAGAAGAAGGCTTTCTAGGGTAGCCAAAACATGCGTGGATTACGGTCAAAGGGTTCAGAATTCCGTCTTTGAGTGCATTTTGGATGCGACCCAGTTCCGACGTTTGAAATATGAGCTTGAAGAAATCATTGATAAGGACCAGGACAGCTTACGGTTCTATAATTTGGGCGACAACTATAAAAAGAAAATTGAGCACATCGGAGCCAAATCGACTTACGATATGGATAGTCCGTTGATTCTTTAATGGTGCGAATGTGAAGCTCACATGATTTTTCCGGGTCCTTCGCACCTCATAATTTGTCGAATAAATGTTGGTTATAGAAGTGAAGCGAAAAGTCAAGACTGGATCCTTTCATTTATGATATGGATTTAACCAATAAGGTTGCGAATTCATACCAAGGTGAGATTGCTCAGCTGCTTTTCGCG # Right flank : CGCAGTTCATCACAGCGATCGGCCGGTTTTGATGACTTATACTCTTCATTTAGAAAGGGTTAAGTGCGTAGAGTCTGTTAGGAAAGCCGCATGTGAGTATAATTACTCCATGCGGTTTTTCAATATATATGACGATTGAGGAAAAGGTCAGAGGTGCTTCTCAAGGCTTCCCCTTACAGGGCATATTGTAACTTCCATCAAAATATAGTGAAAGCAGAAGGCTTGACTTATACGCTGAAGCTACAGCCGGGTTCCGGCTGTGCACGGTCGCACAGCTCTTACAAGTCCCAAAAGGTCGTGTTAACGGGTACTTGCCCTGTCTTGCGTGCCTCAGCCAAGCCCTACGGCCAGCCCCACACTTCGTGTCACTCACCTTGCACCCATGTGGTACCCTGCCTATCCTTGGGCCTTGTACTGTCCTTCCGGGCTCGCTAGCCCGCTCAAGATTCCGCAACCTTGCCTCGACCGATCAGCCCGTGTAAGGGACTACGTTTTACCGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 413777-414549 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRVI01000002.1 Paenibacillus ihbetae strain IHBB 9951 contig_seqid2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 413777 32 100.0 36 ................................ TCCAACTGGTCCACATGATCCATCAGACCATCCTTG 413845 32 100.0 35 ................................ CGCGGTATTGTCTGTAATTAAGAATCCAGCGAATG 413912 32 100.0 35 ................................ AGTTGGCTTCTTACGCTTGACGGTCCACCAGCAGT 413979 32 100.0 36 ................................ CAATCCCGGAACCTGATGCGCCGCTGGAAGACTTCC 414047 32 100.0 34 ................................ CGTCACTCAGATGAGATCAACAGCCGGATCACCC 414113 32 100.0 35 ................................ TCAGAAGCGGTAAATATTGCACTGAATGCTAAGGG 414180 32 100.0 35 ................................ CAGTAATACATGGGGTCGTAAGCTAGGTACTCCAC 414247 32 100.0 35 ................................ CAAGAATGCACGATCGATATTGAGGGGTTGAAAAA 414314 32 100.0 36 ................................ AGATAAAGGGGCTGTTATATCTGGAAGAACAAACGC 414382 32 100.0 34 ................................ TTTTTCAAAGGCTTGAAGGTTTATGAAGAGAAGC GG [414399] 414450 32 100.0 36 ................................ CTACAACCGTACACGTGAAGTGAATCAGCGTATCGA 414518 32 96.9 0 ...............................C | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.7 35 GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Left flank : TCGACCGTTTGAATTTTTCCGTCTGACTGACGAATATGAGCAATATAATAAGTCATTACGCACCCCCAAGACCTAAGACAAAAGACCCAAGACTTAACACCTACAAAAGATCCCTACCAGAGATTGAAGACCTATAATACTCATTCGCCAACAACTGACAATTCCCTACCAATAATTCAAAAAAAAAAATAAAAAAGCGATTTTATTACGACAAAATAGAAGAGAGAGGACTGATCGAAATAGTCGCAATGAAAATAAAAGCTTGGCAACTGGAAAGTAATCAAGTAATTTTAAATCAGGCTGCTTGGTTAGAAATTCAAGTGCGAATGTTAAGCTCGCATGAAATCCCCGGGTCCTTCGCACATCAGAATTTGTCGAATAATCGAGAGTTGTTTCATCCTGACAAAAAGTCAAGTATGAACCTCTGCCTTTTTTCGATAAATGTGGCCGAGAGCACTCCACATTCATACCTAAAATGGATTGATTGCTGTTATTTCACG # Right flank : CAACCAACGCTGGAATTGGTGGCTCGGGAGTCTAGTGTCCTACCCTACATGTATCAGCAATATGTCGTTAAAAATCAGATGATTGTTTTATCTAAAAACGTGGATATATAAATCGTCCCCATAGCCTCTACCCGGACTACGGGGACCATTCCTTATCTCTTAAGTTTAACTTACTTGCCGCCACTTACGATAACGGAGGCTCTTCCGGCTTCACTCATTTGGAAGAGCCTACTGATCATTTGCGGGATTTACCGCCGTATTTTAGAGGAGCTTACATCAACCTCATTTGCGGATTCCGCAATTCCCGTTTATCGCTCTCCTATCGAGTATGGTCCAATTGCCCCGCAGCAGCGTCCAGCTCCGCCCCCCGCTCATCCAGCCGTTCCTTCAACTCCGCCGCATCATAGCGGACGAACGCCCCGTTGACCGTACCTATATAGACTTCGCCATCGGCAATATTCAGCACGCCGCTTCTTGCCGCCTGCTCGCGCAGGTCGACG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //