Array 1 1090-330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQSS010000044.1 Klebsiella pneumoniae strain BA10334 44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1089 29 93.1 32 ............TG............... AGCAACGTTTCCGGATTATATGGCTGGAACGT 1028 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 967 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 906 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 845 29 96.6 32 ............................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 784 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 723 29 96.6 32 .........................A... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 662 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 601 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 540 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 479 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 418 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 357 28 93.1 0 .......................-....A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.0 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 142776-143542 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQSS010000013.1 Klebsiella pneumoniae strain BA10334 13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 142776 28 100.0 33 ............................ TATCATCCCTATCGCGCAGCACTTCGACGGCGA 142837 28 100.0 33 ............................ TACCGCCGCGATACTGGCAGTTTTCAGCTGAAT 142898 28 100.0 33 ............................ CAGCGGCGGCGGTAACGCCGCCAGGAGCAACCT 142959 28 100.0 33 ............................ CACCGATCTGCGCCAGCTGGGTGAGACGATGAC 143020 28 100.0 33 ............................ TACACTCAAGAAAACAAAATCTCAGGTTGATAC 143081 28 96.4 33 ......................G..... TGGAAGGCGCGATTTGGAGATAGAGCAGCATGA 143142 28 100.0 33 ............................ CTCGCACAGCATCGCCCGGATCCGCTTCCACGC 143203 28 100.0 33 ............................ CACCCGCGTTTTCGAAAGGGATGGCGGCTATGT 143264 28 100.0 33 ............................ CGACGGGGCAGGTTTACGTCTACCCGGGCAGGG 143325 28 96.4 33 .G.......................... CATACCAGTCTCCGCCGCGGTCGTACTCAATAT 143386 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 143447 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 143516 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 13 28 98.3 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //