Array 1 11138-8280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDF010000027.1 Flavobacterium psychrophilum strain 96239 contig00027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 11137 46 89.1 30 TGC.G...G..................................... AACCAAGTTCACAAGTACAAGACAAATTAT CT,T [11124,11130] 11058 46 100.0 30 .............................................. AAAACAGAAGTGCAAATTAGCAAGGAAGTA 10982 46 100.0 30 .............................................. TGGTTTGTTCCTTCGGATTTATGAGATGGT 10906 46 100.0 30 .............................................. TAAAGAAGGTACTAACGTACCTGTGGGTTT 10830 46 100.0 30 .............................................. ATATATTTGTACCATAAACAAACAAACTCA 10754 46 100.0 30 .............................................. AAAATAAACCAAGCGTGTCAGACGATTTAG 10678 46 100.0 30 .............................................. ATTGAATTAAAAATGCTTCAAGACACCGCT 10602 46 100.0 30 .............................................. CCAAATGAATAACCAAACAACGTTGAACCT 10526 46 100.0 30 .............................................. CTCACGCCTGAAGTTCTCATAGGCATTAAT 10450 46 100.0 30 .............................................. TTACGAGCCAATTAACAGTAAAAAATACTA 10374 46 100.0 29 .............................................. CCTCATTCCTGCTTCATCTGGATCCATAC 10299 46 100.0 30 .............................................. AATATGCAACTTACGGATTGTTTCTTCGTC 10223 46 100.0 30 .............................................. ATTTGAATTATTATTTCAATCTGAAAGAGT 10147 46 100.0 29 .............................................. AATTTTCTAGTTCCGTTAATGCCTCTTTC 10072 46 100.0 30 .............................................. ATAGTTTAAAAAAAATATTTGCAAAACCAA 9996 46 100.0 30 .............................................. GAAGCGGTGGTTATTCCAGAAGTAAAGCCT 9920 46 100.0 30 .............................................. ATGGAGAGAATTACAAACCACACAAACCAA 9844 46 100.0 30 .............................................. CAACGCCAGCAAGCACAACACCAGCACCAC 9768 46 100.0 29 .............................................. ACGTTCAGAATTTCACAACAGAATTGTTG 9693 46 100.0 30 .............................................. TGACAACGGGATAGAAGCAAATGTTTCTAA 9617 46 100.0 30 .............................................. GAACTTCTAAAAAAAGAAACAGAGTACATC 9541 46 100.0 30 .............................................. TCATTAACCGACACCGTTATATTTCCGCCA 9465 46 100.0 30 .............................................. TGTATGCTAAATACCAATCTGAGGGTTACA 9389 46 100.0 30 .............................................. TAGAGGCTAATGCGTGGCATGGTGCTACAG 9313 46 100.0 30 .............................................. TGACTGGGCAAAAGTAGCCGTAATAGACAC 9237 46 100.0 30 .............................................. TGATTTTCTTGAATATAGTATTTAGCACGT 9161 46 100.0 31 .............................................. GGAACCATATTTGTTATTAAATATGTATCAT 9084 46 100.0 30 .............................................. GCTAATATGTGGCTCCTTAATGGCACACGA 9008 46 100.0 30 .............................................. GCAAACCGAGTTAGAAATCGATTCGATGGT 8932 46 100.0 30 .............................................. GAGTTCTCAGTCATCTGTCTTTTGTCGCCA 8856 46 100.0 30 .............................................. GGCATAAAATGATTTATGAAGTCTATTTGA 8780 46 100.0 30 .............................................. ACGCCTGTCACTATGTCGTCGTATATTTCT 8704 46 100.0 30 .............................................. ATTTCATCTATTTGCCTTAACTCACTATCA 8628 46 100.0 30 .............................................. TTACAAAAGCAGAAGAATCTGATTCTTTAT 8552 46 100.0 30 .............................................. GGTTTGCTTGAGCAGTTCTTCTCTGTGAAC 8476 46 100.0 30 .............................................. TTAATTCTGCGAATGGATTATGCCGAATTC 8400 46 100.0 29 .............................................. CATTGTCAAGTTTAGAAATTGACTACAGT 8325 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 38 46 99.7 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : AAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACT # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATCACACCAATTTTGCCATGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 640-115 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDF010000071.1 Flavobacterium psychrophilum strain 96239 contig00071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 639 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 570 42 97.6 27 ............................A............. AGCTGAAAAAACACCCCTTCTAATAGT 501 42 97.6 27 ...T...................................... GAGTGCAAAAGCACCTCGATTAATAGT 432 42 100.0 27 .......................................... CTCTGCAAAAGACCCATCTCCAATAGT 363 42 100.0 27 .......................................... ACTGAAAAAAGCACTATTTTCAATATC 294 42 100.0 27 .......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 225 42 97.6 27 ............................A............. GCCTACAAAAGCATACCTTCCAATAGA 156 42 78.6 0 ...TG.............A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================== =========================== ================== 8 42 96.4 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : GGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTGCAAAAGCATCCTCTCCAATAG # Right flank : AATATTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAAC # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : AGTCACAGAATTAGGAATTGTAACTGATATTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 444-127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDF010000077.1 Flavobacterium psychrophilum strain 96239 contig00077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 443 41 100.0 28 ......................................... CTGAAAAAAGCACCATTTTCAATATCAG 374 41 100.0 28 ......................................... TCTGCAAAAGCATTCTCTCGAATAGTAG 305 41 97.6 28 .................................T....... CCGCCAAAAGCACCTCGATTAATAGTAA 236 41 97.6 28 ....................................G.... TCTGCAAAAACATAATCTCCAATAGTAG 167 41 78.0 0 ................G..G..C.........TT.TTG..T | ========== ====== ====== ====== ========================================= ============================ ================== 5 41 94.6 28 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : | # Right flank : TTGTATAAAAGCAGATTCTCCAATAGCAGTCACAATATAGTTTTTTGAATTATAAGTTACTATTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCT # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 181-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDF010000091.1 Flavobacterium psychrophilum strain 96239 contig00091, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 180 41 100.0 28 ......................................... CCGGCAAAAGCACCTCGATTAATAGTAA 111 41 100.0 28 ......................................... CTGAAAAAAGCACTATTTTCAATATCAG 42 41 100.0 0 ......................................... | ========== ====== ====== ====== ========================================= ============================ ================== 3 41 100.0 28 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : TTGATTGAGTAACATTACCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGACAATTTACTGTCCTTAAACTGCTACAGCCTGCAAAAGCATTCTCTCCAATAGCA # Right flank : AT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //