Array 1 2882-4123 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAHXQA010000233.1 Klebsiella pneumoniae strain 5216 NODE_233_length_5488_cov_30.415265, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      2882	    29	  93.1	    32	............TG...............	TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA	
      2943	    29	  93.1	    32	............TG...............	TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA	
      3004	    29	 100.0	    32	.............................	AGGTATTTGACCTCATCCAGAAAGGCACAGAC	
      3065	    29	 100.0	    32	.............................	GCACCCTCACGGATACCTTTTGCACAGTGTTA	
      3126	    29	  93.1	    31	............TG...............	TTACCAATGGGGAAAAATCTTCATTTGTAAA 	
      3187	    29	  96.6	    25	.....T.......................	AACATCAGTGGAAATCCACTGCGGC       	Deletion [3241]
      3241	    29	  96.6	    32	......T......................	CGAAAACGGCAACCTTCATAAAAACGTCTTTT	
      3302	    29	  93.1	    32	............TG...............	CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG	
      3363	    29	 100.0	    32	.............................	TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA	
      3424	    28	  96.6	    32	..........-..................	CGGTAACGCAAATGTGATCCGATGTCGTCAGG	
      3484	    29	  93.1	    32	.............T.A.............	AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC	
      3545	    29	 100.0	    32	.............................	AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG	
      3606	    29	  93.1	    32	............TG...............	TTAATGTTTTGTTAATTTATGAGTGTGGTGAT	
      3667	    29	  93.1	    32	............AC...............	AGCAAATCGAAAATCCGGCTGTTTGAAAAATG	C [3678]
      3729	    29	  89.7	    32	.............T.A............C	CATGAGCCTGCGCACTCTGACGCGCACCTGCT	C [3740]
      3791	    29	 100.0	    32	.............................	TGAGGCTGCTGACGGAGAATTGGGACCTGTTC	C [3802]
      3853	    29	  96.6	    32	..............C..............	CCGACCCGGTGCCCAGGAGAACTGGCTGAATA	
      3914	    29	  93.1	    31	.............G.A.............	TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 	
      3974	    29	  93.1	    32	...C......................T..	CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC	
      4035	    29	  96.6	    32	.............T...............	GGCATGAGCGAGAACCACTGCGAGAGTGTGGT	
      4096	    28	  86.2	     0	..........A.....T......-....A	|                               	
==========	======	======	======	=============================	================================	==================
        21	    29	  95.1	    32	GTATTCCCCCCGCATGCGGGGGTTATCGG	                                	       

# Left flank :   GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA
# Right flank :  ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA

# Questionable array : NO	 Score: 5.33
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.34,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGCATGCGGGGGTTATCGG
# Alternate repeat :   GTATTCCCCCCGTGTGCGGGGGTTATCGG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [4-18] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.74   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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