Array 1 1479436-1481950 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043476.1 Xanthomonas hyacinthi strain CFBP 1156 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1479436 31 100.0 35 ............................... ATGAACGCGAGATCCGGCCAGGCGAGAGGCTGAAG 1479502 31 100.0 35 ............................... CGGGGTGGTTGCCCATGGATGCCTGCGTCTGGATT 1479568 31 100.0 34 ............................... GTTAGCTACTGCTCGGACTACCCTGAGTGGAATC 1479633 31 100.0 34 ............................... AACATCGCGTTTAGCGACGGCACTACCGACCCGA 1479698 31 100.0 34 ............................... CGCTGCTGAAAGATGGGTCATCCGGCTTGCGTGA 1479763 31 100.0 34 ............................... GAGGCCAGCACGGAGTTTGCGGAGCTGGCTGAGG 1479828 31 100.0 35 ............................... GCAAGCTGCATTATCCCGCTGACGGCCGGGCAAGC 1479894 31 100.0 35 ............................... TTGCGGAAGAACTTGGCGGCGTCGCCGGCCGTGTG 1479960 31 100.0 35 ............................... TCGTTGTATTGCTTGCCGTAGGCGCGCAGCGCCTC 1480026 31 100.0 33 ............................... TGCAGGTCGTAGGTTCTCGCATCGCCCTGGTGG 1480090 31 100.0 35 ............................... CAACGCAGCGGCAGTGCCCAGTTGCCTGGGGAAGT 1480156 31 100.0 35 ............................... AACTTGCGATGAACAATCACCTGTCCACCGAGCAG 1480222 31 100.0 34 ............................... AAGGCACTCGGTGTTGCGACAAGACAGCGGTCCC 1480287 31 100.0 34 ............................... CCCGTGGGTCTGATCGAACGGTTCCTACGCCTGT 1480352 31 100.0 34 ............................... GTTGATGGCCTGAAAGTCGGCGACACCTACGAGC 1480417 31 100.0 36 ............................... CTGATGATCCACAACGCATGGGTGATGGCTGTCGGG 1480484 31 100.0 34 ............................... TTGACCGGCGCGTTCCGTCTCGGTGCCCAGGTGT 1480549 31 100.0 33 ............................... CCAAGCTGGCTGTTCACCGGCTCGTCGAAGATG 1480613 31 100.0 35 ............................... GGTGGCTATGCACCAGCGCAAGCACGTCGCCAAGA 1480679 31 100.0 35 ............................... TATGGACCCGCGTCCAGTTTTCCGCCGCCCCTGGG 1480745 31 100.0 34 ............................... AACTGCCCCTGGCCCCAATCAGTAGTCCCGCCGC 1480810 31 100.0 33 ............................... GGTTTCAGCGATTCAGGCCTGGCACACGGCCAG 1480874 31 100.0 35 ............................... GCGCCAAGAACGTCGCCCAGCAGCAGCCGCCCAAG 1480940 31 100.0 35 ............................... TGCTTGAGGATGCTGGGATCAATTCGGCATTCCGC 1481006 31 100.0 33 ............................... TGGATCGAGCACGGGCTGAACGAGCTGGCCGAC 1481070 31 100.0 35 ............................... GTCGTACGCAAGCGATGCCCCGCCAAGCCATGGGT 1481136 31 100.0 34 ............................... ATCCATGGCGACGCGATCCTCTCGGCGCACCAGG 1481201 31 100.0 35 ............................... CCGAAGGACATGTTGAGGATCCGTGCGCCCTGAGC 1481267 31 100.0 33 ............................... CTGACGATTCGTGAGCGGCTGCTGCACTGGCTG 1481331 31 100.0 35 ............................... CGGTAATTGATCCTTGCGGCGTCGTACTCGTGATC 1481397 31 100.0 33 ............................... CTCCTGCAGGAGAGCGCTTCTCGGAAACCTCTG 1481461 31 100.0 35 ............................... TTCAGCATGCCGCCCATCGGCCCGGCCGCGGTCTC 1481527 31 100.0 34 ............................... TTTTTCGGCGTGCAGGAGGGGGTTATGGGTTACT 1481592 31 100.0 36 ............................... TGGTATTGGTCGCGCTGGTCGAAAGTGGCCTGCCGG 1481659 31 100.0 33 ............................... AAGGAGGCAGGCTTTCTCTGCCAGCCTCCCCAA 1481723 31 100.0 34 ............................... ATGCTGCCGGTTACAGTCTGCGCATTAGCGTTCA 1481788 31 100.0 33 ............................... GGGTTGACCTTGTTGCGCAGCACAGCGGCGGAC 1481852 31 83.9 34 A...........A..A.C..C.......... ACATCTGCAGGCAGGTGATCCCGTCGCGGGCAAA G [1481880] 1481918 31 74.2 0 C....CG..C...CA..A..G.......... | CA [1481930] ========== ====== ====== ====== =============================== ==================================== ================== 39 31 98.9 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGTGAAAAGCGACTGCGCAAAGTTGCCAAAGCCTGCCGCGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAAGTCGAACCTGCGCAATGGGCCGCATTGCGGCAGCGCCTATGCGACCTGATCGATCCCGCCGTCGACAGTCTTCGCTTCTATCAGCTCGGTGCGAAATGGGAAGCCCGTGTAGAGCACGTCGGCGCCAAGCCCAGCCTGGATCTCAAAGGCCCGCTGATCTTCTGACGCGAACCGCAAGCGACCGGGAAAAGCCCGGCAGGTTCGCGGAATTCCACAAACCATTGATTAAAAAGAAAAATATTTCAGAGCACCCGCTAACTGCAAGTAGGCGGCAACTGAATTCGATTGTGCCTCTTAAGGTTCCGCACAAGTGCGGACTTTTTCCCAATGCCCATCAGCGCTTATGCTCAGGGGG # Right flank : CACATTGTATTTGCCCACAAAAAAAGCGCAGCCTCGCGGCTGCGCCCAGCGTGCCGCGCCAGCCGGGAGAGAGACGGCTGGCGCGATCCGTGTCTGCGGCATCGCTCAGCGATGCGCGAGAGGCCTCACTTGACCTCGAATTCCTGCGGCGTTCCGGCCGGCTGGCCGTTCACGGTGACCTCGGCCTTGTACTTGCCGGCCGGCCAGCCCTTGGCGTTGGTGAAGGAAATGTTGGTGGTTTCCGCACCGGCGGTGGTCAGCGTCGCACTCTGCTCGCCAGCGGTCTGGCCGTCCTGGAACAGCAGCTTGACGCCGACACGGGTGTTGGTGGAGGAACCCTCGGTCTTCACCGAGACGATGATGCTGTCCTTGCTGGCCAGCGTGGTCAGCGGCGCCACCGTCTTGTCCGCGCCGGCGGTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAATGGCCGCGGCGGGCGCGGTGTGGGCGGCATCCGCCGGTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2168840-2164250 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043476.1 Xanthomonas hyacinthi strain CFBP 1156 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2168839 28 100.0 32 ............................ AAAGGGCAGCGGCACGATGAGCCGCTGGCGGA 2168779 28 100.0 32 ............................ TGGTAGCGCAGGATGATTTCTATTCCGGCCGA 2168719 28 100.0 32 ............................ TGCTGCAGGCGCAGCACGTCCAGCACGCCCTC 2168659 28 100.0 32 ............................ AATACCGGCGGCCTTGGCTGCCGCCGTCTGAT 2168599 28 100.0 32 ............................ CTCGCCAGCTGCATTCCGCACGACCAGCCCAT 2168539 28 100.0 32 ............................ AGTTTGTTCGTCGTTTTCATTCTTGGCGAGGG 2168479 28 100.0 32 ............................ ACGTAGAGCTGCGCGTAGGTCTTGCCCTCCTT 2168419 28 100.0 32 ............................ CTGTCCGGATGCAGGAACACCAGGCCCACTAG 2168359 28 100.0 32 ............................ TCAGCGCGCAGGGCGGACAGGGCTTGTTCGTC 2168299 28 100.0 32 ............................ ACACCTATTGTCTGCGAGCAACGCGAAGCGGG 2168239 28 100.0 32 ............................ ACAAGATTGCACGAGGGGGGCGCGGCTCGGCC 2168179 28 100.0 32 ............................ GATGCGCTGCGCTTCATCGCAGAACAAAACGA 2168119 28 100.0 32 ............................ AGCTTGCGGCGATGGAGGACGACGACACGCTC 2168059 28 100.0 32 ............................ AACCGCAGCTTGCTCATTCGGTCGTGCGCGCC 2167999 28 100.0 32 ............................ ACCGCAGCGGCGATCGACGCGCGCCGTTGCTC 2167939 28 100.0 32 ............................ GGCTATCGCACCTGGAACTGGGCGGACATCCT 2167879 28 100.0 32 ............................ TCGATGAAGGCGTAGTCCGTCATCTCGCCAGG 2167819 28 100.0 32 ............................ CAGCCGACCCGCTGGCTATGCTGCCGAGAGAC 2167759 28 100.0 32 ............................ ACGCATCGTAGCAGAATGCCGCGTAGTCGCTC 2167699 28 100.0 32 ............................ GCAAGGCAGCGCTGCGACGGGCCGCACCGGCG 2167639 28 100.0 32 ............................ CTAGCGGTATCGGGAATCAGCCCACGGCAGGG 2167579 28 100.0 32 ............................ CAGATCCGCGCGCAGTCCGAGCGTGCCGAGAA 2167519 28 100.0 33 ............................ CTGCCGCCACCGTTCAAAGTCGATGTGTGCGCA 2167458 28 100.0 32 ............................ TTTGCGATCCCGGTCAGCTCATTGAGCATCTT 2167398 28 100.0 32 ............................ ATTCGTTGTCCAGCAAGTTCCGCATTGCCGGG 2167338 28 100.0 32 ............................ ACTTGTAACGCAAGTGGCGCAACACTTTCAGC 2167278 28 100.0 32 ............................ CGGACGTGCTGGACCGGATTTCCGGCGTCGCC 2167218 28 100.0 32 ............................ TTATAGGCCAAGCCGTAGCGCAGGCGACCATC 2167158 28 100.0 32 ............................ CGCTGCCGATGAACTGCTGGCCGTAGGTCTGG 2167098 28 100.0 32 ............................ GGAATACGGCACAAGCAGGCGTAAGGCGATGC 2167038 28 100.0 32 ............................ ATCGGCGGAATCCTTGGCGGAATTGGAAAGGC 2166978 28 100.0 32 ............................ CTCTTGGTGATGCCGGAGGTTTCCAGGGCCAG 2166918 28 100.0 32 ............................ AGTACCTGGCAGCCCTGGACCGGGCGAAGAAG 2166858 28 100.0 32 ............................ TGCCTAACGCCGGCGGCGGGGTTGGAGGCGCA 2166798 28 100.0 32 ............................ CCTATGTAGGAAGGCAGGTCACGTTGCTATTT 2166738 28 100.0 32 ............................ TGTCTGATCTGAGCTTCCGGTGGTAGAGCTGG 2166678 28 100.0 32 ............................ GCTTCGAGATCCGCGACATGATCGCTTGGGTC 2166618 28 100.0 32 ............................ TCGAGCAGAATGTCGTTCGCGTCGATCAACGG 2166558 28 100.0 32 ............................ GTCGTGTCGCTGAGCAGCACGCGGCCCCAGCT 2166498 28 100.0 32 ............................ TAATGCCAGAAACCTTCACTTGGTGCGTCATC 2166438 28 100.0 32 ............................ CACGGCAATGCACCGGCCGCGATCCGCGCGTG 2166378 28 100.0 32 ............................ TGTGGCAGGCCTACCACGAGACGACCGACGCC 2166318 28 100.0 32 ............................ TACTTGGGCCACCTGATGGTGATTGCCTACAC 2166258 28 100.0 32 ............................ TGCTCCGGCTCGTAGGCGGCCACGTCGGCCTC 2166198 28 100.0 32 ............................ TCGAGAGATCCACGCCATCCGATGTCCTGAAT 2166138 28 100.0 32 ............................ TTCGTAAGATCGCCGTCGCGCAAGAATGCAGC 2166078 28 100.0 32 ............................ TGTTCGCCCGCGTCGGTGCTTATCACGTGTCC 2166018 28 100.0 32 ............................ ATGCAGTGCCGACCGTGGAACCAGCAAAACTG 2165958 28 100.0 32 ............................ CTCCGCCCTGGCGCCGGCCTCGTCGATATCCT 2165898 28 96.4 32 ......................T..... TTTTCCAGGTCGAGGTCATGCGCCGCGGTCAG 2165838 28 100.0 32 ............................ GGCCGGGTGGCGCGTGACAATATTCCGAGATG 2165778 28 100.0 32 ............................ TACCGGACCGTGAAGGACTGGATGGACAGTCG 2165718 28 100.0 32 ............................ TGTAGGTGCGTGGTCTGCTCCGGCGTGTCGTA 2165658 28 100.0 32 ............................ CCCGTGTGCTTTGGGCCAGCGAAGGCCAAACC 2165598 28 100.0 32 ............................ ATCAAAGACGCCGAGAAGAAGGCGGATTGATG 2165538 28 100.0 32 ............................ ACATTGACTGGGCCGCCACCGGGGCCGGACAG 2165478 28 100.0 32 ............................ ATCGCGCGCTTGTTGTCGGTGCGCGGCATCAC 2165418 28 100.0 32 ............................ AGCACGGCGAAGGTCAGCAGGCCCAGCGACTG 2165358 28 100.0 32 ............................ GATGGTAACGAGTATCGAGTCCAGTGGGCGGT 2165298 28 100.0 32 ............................ ATCCTGCGGATCGTTGGATTCGCACACGTCTC 2165238 28 100.0 32 ............................ AGGCGGATCATCCGCCGGCGGTAGGCCGCGAT 2165178 28 100.0 32 ............................ CGCAAGAGTGGGGATGCGACTGGTCGGAGAAT 2165118 28 100.0 32 ............................ TACCTGTGTCGCTTGGTCACGCCTCCCGGCGG 2165058 28 100.0 33 ............................ TGGAAATCCGGCGATGTAGTCCTGGTCCTGAGT 2164997 28 100.0 32 ............................ AACGCGTGGAGGCATCAGCAGTATTTTCTGCC 2164937 28 100.0 32 ............................ ACCCCGCAATCGGTCAGGGTGTAGTCCAGTAA 2164877 28 100.0 32 ............................ AGCTTCCAGACGCTGATTCCGCTGCTGAAAGA 2164817 28 100.0 32 ............................ ACGCTGCCATACTTCTCGACTGGTGCCAGGGA 2164757 28 100.0 32 ............................ CATGGCCCGGGCGTCCACTTCTTCTCGGCGGC 2164697 28 100.0 32 ............................ TACCCCGGAAGTCTGATCGCATGTAGTGCGAC 2164637 28 100.0 32 ............................ TACAAGGCATGGACTGTGATGCCGTCTGGCAA 2164577 28 96.4 32 ........................A... AAGACGCCGAGGAAACGGCAGCGACAGAAGAC 2164517 28 100.0 32 ............................ AGATCGCACGGGCCATTTGGCCGAACGGGGAT 2164457 28 100.0 32 ............................ ATTGTCGGGGTTGTACTGCTTGGTCTCTGGCC 2164397 28 96.4 32 .........T.................. GATGCCCAGCGCTGGGGCTTTCTAGACCTCGC 2164337 28 100.0 32 ............................ ATCCCCACACTGCGGAAACGACAGTCAGCCCC 2164277 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 77 28 99.9 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : ATTGCAGGGATTGATGGCAACGTCCTGGCTCCAGGGCATGGGCGACCATCTGTCGATTTCCGGCATTGCCCTGGTGCCTGACGGAACCTCGCACCGACAGGTGACGCGTGTCCAGGCCAAGAGCAGCCCCGCGCGCCTTCGACGCCGCGCCATGCGGCGGCATGGTTGGGATGCCGACACCGCGGCCGAACGCCTCCCTGATGCGGCGGCCGAGCGACTTCGGCTTCCCTTCATCACGCTCGGTAGCCGAAGCACCGGCCAGGCGGCTTTTCCCTTGTTCATTCGGCATGGGCCAATGCTGCAGGAAGCCAGGCGAGGCCCGTTCAACAGCTATGGCCTTAGCCATGAGGCAACGGTTCCCTGGTTCTGACCCTATTTTAGCGCCCCAATAAAATATCCAAAAAATCAACCACTTAGATGCCATCCTCTCGAAAAGGGAGGATGGCTTTTTTAAGCTTGGTTTACTATTATTTTCAAGCACTTGGATGAATGCCGGTCTT # Right flank : TGGTTCCTGATTAGCCCTGACCTTCAGCCAGCAGTCGCAGGATCTGCGCTGGCGTGAGTTGATGCTGTCGTCACCTGAAGCCTACGAGGTGGCGTGATGAGCATCAATGCCGTGCAGTTCCAAGCTGGATTGTCGATGCCGGATTTTTTGGTGTCCTACGGCACTGAGGCCAAGTGCTACCGCGCGTTGTACAAGTGGCGGTGGCCGCAGGGATTTCGCTGTCCCTCCTGTGCCGGGCGGGCGCGGTCGCGTTTCAAGGGCAGTGCCGCGATCTATGACCAATGCAGCGCATGCCGGCATCAGACCAGTCTGATTGCAGGCACGATGTTTGCCGGCACCAAACTGCCGCTGCGCAGCTGGATGCTGGCCTTGCACCTGTTGACCTGGACCAAAACCAAGATGGCCGCGCTGGAGCTGATGCGTCATCTGGGGGTCAACTACACGACGGCTTGGCGGATGAAGCACAAGATCATGCAGGTCATGGCCGAGCGCGAAGCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //