Array 1 390688-388619 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 390687 37 100.0 35 ..................................... GACTCTGATTCAAAATTTTCTAAGTAGTAAGTAAT 390615 37 100.0 38 ..................................... CATCTTTTAATAGCTTCGTGTGGATGCAGTGGACGTGG 390540 37 100.0 35 ..................................... AAGCTCACCCTCTTGAATCCAATCCTTAACTTCAG 390468 37 100.0 35 ..................................... GTACGGGGGACTGGGGAAAAACTCGTTACCTTCAC 390396 37 100.0 36 ..................................... TTTTTGGCGTAGTTGCTGTATATTACGCGCTTACCC 390323 37 100.0 36 ..................................... CCAATGGATTCTGGTACTCTTACTGGCACTTTGGTT 390250 37 100.0 34 ..................................... ATCGGGTAGGCTCCACTCGTTTCTACCCAACCGA 390179 37 100.0 40 ..................................... CGTACCATCGTCGCTGGTATAACTGAACCATTTATTAGAG 390102 37 100.0 34 ..................................... AAACAATCGGGGAGCTGGTCTATAGATGTCGCTG 390031 37 100.0 41 ..................................... AGATATTTAGGAGATATCCACAGAACGACACGCGGAAGGCT 389953 37 100.0 34 ..................................... CTGATATTTGGTTGTTTCGATTCTCCATATTACT 389882 37 100.0 32 ..................................... CAGTGATTTTGTAGATATTATCGGGGGTGGTA 389813 37 100.0 33 ..................................... CTAGCCAAAATCAGCAAATCCAAGGAGAAATAT 389743 37 100.0 35 ..................................... TATCAAAATTATTTCCTGCTTCCCCCCAGTAAAAT 389671 37 100.0 34 ..................................... TAATTCACAAGCAGTCGATGAATTAATTGCGATT 389600 37 100.0 38 ..................................... GCTGGAGAATGGAGCAGCTACTTAGCTAATGCTGGCAC 389525 37 100.0 38 ..................................... GCCTGTGATGGGAAATTCACTAAGTCTGGTGCGGGTGG 389450 37 100.0 36 ..................................... TGACTATCTACATTTATCCAAATGTGAACCTGGCGA 389377 37 100.0 36 ..................................... CTCTAGGTAATGGTACTCAGCCTCCTGTATCAGACG 389304 37 100.0 33 ..................................... GTATTGGTACTCATACCCTTCAATCCAGTAGGG 389234 37 100.0 37 ..................................... AATAACTCAAGAGGAGATATCGCGGTGCTTGACGATT 389160 37 100.0 34 ..................................... TTCGGTAATTTTTGCTAGGCGCAGGGAACACTCA 389089 37 100.0 37 ..................................... CCACCTATTGGTAGGGCGGCTTTTTCATGGGTGCTTT 389015 37 100.0 34 ..................................... AAATTTTTCCCATCCGGCTGCTATTAAATCTTCT 388944 37 100.0 34 ..................................... AGTTCAGACTGATATTCACCAAGGTAGTACTGGG 388873 37 100.0 36 ..................................... GATGACATCCCCTGTGAGCTTGACTTAAGTAACTGA 388800 37 100.0 36 ..................................... GTATCTGACACATCCTTCGATAGACCCCTCCAATAA 388727 37 100.0 35 ..................................... ATGAGATTGCCCGAATCCCTTTGCACACATAGCAA 388655 37 83.8 0 G...A.......................A...A.G.G | ========== ====== ====== ====== ===================================== ========================================= ================== 29 37 99.4 36 ATTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : CTTGGGGAAAAGGTGAAAGGGGAAGGGTTAAAGGTTTTTTCTTGCCCCTTTTCCCCTTCCCCTTTTGCCCTTAACCGACAAGTATTGGTAGTACTCTTGCTGGATTTCTTACAAGCAGCGATATAGCATATCTATGTTGGGTTAAGCGCTGACTTAACCTAACATGGATATTGAAAGCTTTACCTATATTGTTTGTAATGTGGTTGCTGCTTTGATTAGTTTGAATGTATTGGCGAAGAACGAGTCCGGAATGATACGATTTTCTTCGCCGGATGCGCGGATGGGTAGGTGTTGAAAAAGTGTTTTCCACAAAAATCGCTGAAACGATTTCTGTATCAGGCTTTTCAAGCTCAATTCCTGTAAAATCACCCGCGCACTTTACAGAAGAAGACTTTCAGCGATTTTGGTTTTGCGTTTTCATTATTGCTCATGTTATTATGGCACTGTCCGCGCAACAGAACCTTGAAAACTTCATACACACTGGCTTTGGAGCTTCTGCC # Right flank : TGTATCGAGCAAAGTAAAAATCAAATAATTGTAGGGTCTATTAGGTGCTGATTTGCAAGATGATTTGTCACGGAATAACTATCCTAGCGCCTAACGCACCATTCACGCGGCGGTGCGTTACGGGTAAATTTCATTATCTCTGTGTCCCAAATCCTTTCATAGCCGTAACACAACGCCACTTGCTATAACGCGGGAAACCCGCGCAACGCAGTGCATTGGTGTCAACTTAAGCTAAAAGCGATATAGGGCGGGCGTTGTACAAATACCTCGCGCCCTCATCCCCTAACCCCTTCTCCCGCAGGAGAAGGGGAACTAAATCTCTTGCTCCCCTCACCCTGTGGGAGAGGGGCTGGGGGTGAGGGCGAAACCTTGCACAAGAGCGGGTTTCACGTTAAGTTGACACAGGTGACCCCTACTCGGCTGACTCCATAGCAGATGTTTTTGACAAAATACTTGCGTTGTTAAACAAAGTGCTTGTCTTGTGTATACGCCACTATACA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 1742863-1743042 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================== ================== 1742863 28 100.0 50 ............................ AGGAGACGTTTTTAGTTTCGTCACGCAGAATCGTGGTGCTTAAGTTTCCA 1742941 28 100.0 46 ............................ TGGGAAAATATAGGTTAAGTCTGCTTGAATCATTGCCTTGTTTCCA 1743015 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================== ================== 3 28 100.0 48 TCCCCGTTAGGGGTAATGATTTGAAAAC # Left flank : ACTTTGTGCGTAAACCCTTGCGGGCAAATATCATTTTTGACAAGATGGCGGAACACTTAGGTGTGCGCTACGTTTACGCCCAAGAAGCGAACCAACAGCAAAATATAGAAATTGGTTCTACTAATAGTGCATCCACCCCAACCAACTCATTAACAGTTGCAGACTTAGAACTGATGCCGAGAGAATGGATAGAACAACTGCATCAAGCCGCGCTAAGAGTTAATAGCAAAGAAGTATTGAGATTAATTGAGCAAATTCCACAAAAGAGCGATCGCCTTGCCAAAGCCTTAACTGATTTAGTTGATCGCTTTGGTTTTGAAGAGATGATCGAATTAACCAAGCAGCAGCAGCAGGCGGTTAAAAAACCCGTTTAATGTGCAAAAAACTGATCGCTGGGATATCAACATTTTTCTATCACATTTAGTAGTTGGGTAGGGTGTGTTATCGCGCCAGCGTAACGCACCGTCAAATATTTGCTGAGTTTTTCATGGCTGTTTTAG # Right flank : CCCTACCTTTCTAGAAGCTTTACCCAGAAAGGGTTACAGATACCCATTTTCGCGGGGGGTCTAATTTGCTTGTCAACAAGCATAAATTATTGACAATTAGACATAGTTGGAGGTAGTTCAAACTTATACCCAGCAAGGCTTTCGCGGGGGTCAACGAAAGAATAAGAGTGTTCCAAAAAATAAACGATCCAAAACCTGTCATTGCGAGCGAAACGGAGTGTAGCGTTCGCGTAGCGTCTCGCAGAGAAGCAATCGCAAAATCTTGCAACTACGAGCGAGTCTATGCGATTGCTACCCTGCGGGAACGCTACGCGAACATTCCGCTTTGCTCCATTCGCAATGACAATTGAGCATTTTTTTACTTGGAGTACTCTAAGGGTTTCAGAGATTAGCCTACCCCCGCGAAAAATTTAAGTGTCAATAGTTAAAATAAACACTATTGTTTTCAACGGGAAACTTGATATTCAGTTTTCAAGGTGCTGTGTGGATTAGGGCATAGT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.19, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGTTAGGGGTAATGATTTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 1744602-1744418 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 1744601 35 94.3 41 ....TT............................. TATCGCTCTCACGCAGCAAAGTACCACCCCAAAAAATTTAG 1744525 35 100.0 38 ................................... CGAAGATTGCGAAAAGAAAGCAATCTTTGTTTTTCAAA 1744452 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 3 35 98.1 40 GTTTCCATCCCCGTGAGGGGTGAAGGAATTAAAAC # Left flank : AGATTTCGCCCTCACCCCCAGCCCCTCTCCCACAGGGAGAAGGGAGCAAGAGATTTAGTTCCCCTTCTCCTGCGGGAGAAGGGGTTAGGGGATGAGGGCGCGAGGTATTTGTACAACGCCCGCCCTATATCGCTTTTAGCTGAAGTTCATTGGTGTCAACTGAACGTGAAACCCGCTCTTGTGCAAGGTTTCGCCCTCACCCCCAGCCCCTCTCCCACAGGGAGAAGGGAGCAAGAGATTTGATTTAGTTCCCCTTCTCCCCCAGGAGAAGGGGTTAGGGGATGAGGGCGCGAGGTATTTGTACAACGCCCACCCTATATCGCTTTTAGCTGAAGTTGACACCTGTGGGCAGTGCCTCGCCCCTACAATCTGTCGCATTCTTTTTTCAAATTGGCATTACTTAAGCAAAAGTTGCAGCTCAGATACCCGACTTTTTGAAAAAGTCGGGTATCTAAATCTCGCTAAAGTACGTGAAATTCAACCCTACTGCTAATTTTCAA # Right flank : CCTAGCATTTTCAAAGCCTGATACAGAGAGGGTTAGAGATAGCCATTTTAGCGGGGGGTCTAATTAACCTGTCAATAAGCTGAAATTATTGAGAATAAACCACTAGTAGAGGCTATTCAAAACCTTACTGGGTAAGCTTTTCGCGGGTGTCAACGAAAGAATCAGGGTTTCAGAGATTAGCCTACCCCCGCGAAAAATTTGCGTACACCAAGCTAAAATAGGTACTTTGCAATTCAATAGGAAACGTAAGATTAAGTTTTCAAGGTGCTGTTTTTGGTTGCGGATAGTATAACAAATTACTCTGATTTTTCCTAGCGTCAATAAGCAACTTAGGGATTTCCAAGAAATAAATTATTCCATCTTGTGGGGCGGGCATCTTGCCTGCCACATAAACTGGGCGGACAAGATGTCCACCCCACAATAAATAATGGGATATTTTTTTATTTGGAAGTCCCTTAATATAAGTTTTCTTGCCTACTGCAAATTATTGTTGTGTATCT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTGAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 4 2013052-2012447 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================================================================================================================================================================================================================================== ================== 2013051 35 97.1 243 ............T...................... GAGGGAAGCGAATGCCCATTGGTGTCAACTTAACGTGAAACCCGCTTGGCGACAAGGTTCTGCCCTCACCCCCAGCCCCTCTCCCACCAGGAGAGGGGAGTAAGAAATTTAGTTCCCCTTCTCCTGCGGGAGAAGGGGTTAGGGGATGAGGGCGCGAGGTATTTGTACAACACGCGCCGTATATAGCTTTAAGCTTAAGTTGACACATATGGCGAATGCCTCCCCCCTATCCCTATAAGTATG 2012773 35 100.0 41 ................................... AAAATCAAAGGTAATCCATGCTTGCCTTTGATTAAGTCGAC 2012697 35 100.0 38 ................................... TACTCCAATTCTTTTTTGGTTTATTTATTTACACAACA 2012624 35 100.0 37 ................................... ATTACAGTTATTAAAACTGCTAAAGCAGTTAATAACA 2012552 35 100.0 36 ................................... TTTATACAATTGGTATGCAACAGGCACAAGCGACAG 2012481 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =================================================================================================================================================================================================================================================== ================== 6 35 99.5 79 GTTTCCATCCCCGTGAGGGGTGATGAATTGAAAAC # Left flank : ACTTCCTTCCCCCTATACAAGCCCAATGTATAAGGATTTGGCGGCAAAATACGCCATTATTGGTGGCGCTGCTGGTTTGCTGATTGGCTCCAGTCAAGAAATGGTTCGCGAACTCAAGCAAGAACGAGATGCAGAAGAAGAATTACTGCGAGATTTAGATAAAGCTATTCGCTCTAGTACAAATAAAGAAAAGTAACGACAGATATCAATACTTGTGGGTTAAGGGAACAGGGGAATGGTTCAAGGGAAAGAAAAAACCTTTAACCCTTAACCTTTACCCCAAAACCAATTTTGAATTCAAATCGCTTAACCGAGCAGTATTAGGACAGATATATGTGTGAGTCCTTGCAATCATCAGTACCACGGAAATAGCTATACCAAATATCTCAATGCTTTTTAGGAAGTGTTCAAATTTGAATACTTCATTTTTTTATATCAAATACTCGACAGGGTGACAAAGAAGTTACAAAGCAGACAGGATAATGTGCATATAACTGCTA # Right flank : CCTACCCTTTTAGAACGCTTGCTATGACTGGGTTTGAAAGTGTCATTTTAGCGGGGGGTCTAATTTTACTATCAATAAGCATACTTTACTGACAATAAGCCACCACGACAAGCATCTTAAAGCCTTACTCAGTAAGCGATTAGCGGGGGTCAACGAAAGAATAAGGGTTTCCAGCATTGGCATACCCCCGCTAAAAATTTGCGTGTGAAAGGTAAAAGCTAATACTTTAACTTTCACTAGGAAACGTTATATTAAGTTTTCGAGGTACTGTAATGTTGAGTAATAGTATAACAAAACACTTAGAATTTTGAAAGCCGAAAACATTAACTTTTCAGTATTACAGACAAACCAAAAGCCAAAACAATAATAAAAGTTAGCATATCAATTAAGAGCGATCGCTCCGCTAAAGCCTTCTCTTTGCTACGCAACGCTAGGGCGAACGGCTAACGTACTTTTAGCAAATCTCTGATAGTTTTGGCTACACAGTGATGATGGTGTTC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTGATGAATTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 5 2275605-2275043 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 2275604 37 97.3 35 ................T.................... CTCCACAAACTTCAGTCAGAAAATTGTGTAATTTG 2275532 37 100.0 37 ..................................... AAAGTCAAAGACGTTTTTATTTTGAGCTACAGCATCG 2275458 37 100.0 37 ..................................... GCTTTACTGGCAGCGATACCACCATTACTTATGTAGG 2275384 37 100.0 37 ..................................... GCAATTTCAAAAAGGCTTTGATAGGCATCTACCCAGC 2275310 37 100.0 37 ..................................... CTGCGAAACCATCTGGTAAACCTCAACATAGGGTTGG 2275236 37 100.0 46 ..................................... TTGTCAACTGCTGTCTGCACGTCCGCGGGGACGGTTCCAGCAGCAA 2275153 37 91.9 37 A....T..........T.................... CTTGATTGTCGTGTCCAGAGCAGTAGAAAAAAGGTTA 2275079 37 89.2 0 ..................A.T..........AA.... | ========== ====== ====== ====== ===================================== ============================================== ================== 8 37 97.3 38 GTTTCCACAACCTATTCCCCCGCAAGGGGATTGAAAC # Left flank : GGGGGAATGAGTAATGAGTAATGAGTAATGAGTAATGGGTAATGAGTAATGAGTAATGAGTAATGAGTAATTTCTCCCTGTCTCCTTGTCTCTTCATCTCCCTCATCTCCCCATCTCCCTCATCTCCCCATCTCCCTCATCTCCCTCATCTCCCTCATCTCCCTCATCTCCCTCATCTCCCTCATCCCCCTCATCCCCCTCATCTCCCTCATCTCCCTCATCCCCAATTTATTGGGACTAAAAGCTAGACAAGATTTGTAAGTAGTTTTATCATGATGATGAATTTAACAGCTTGATGTTTGGCAAGTCGAAGTGGGGGCGAAAACCCTGGGGGATATGCCAAAATCGCCGGAACCTTGACAAGTGAATAATTACAGCGTTTTAGCAATCAGGAAAGTTGCAAATTAGTTTCAATAAGGTGGGCTGAAAATGATTAAAATTTTCGATCTGCCAAAATGCTTTCCAGGAAGCTTGCTCTGGTTAGGTTTCAATACCGAGCT # Right flank : ACTTGAGTAGCACCGTTTTCGCTTACAAGGCTGACTTTGCGATCGCATTTCCCCGTAAGATGATGAAAATATAGCTAAAAATTCTAGGCGATTATAAAAAAAGGGGCACAGCACTGCTGTACCCTTAAGAATCATTTATCTACCGCAAATATCATTTAAAGTTCACGTAGGATGCGTTAGCGATAGCGTGACGCATCAGTGCCAAAGCTGAGATTTTTTCAGAAATCAAATCGGATTTTTATACATTTTGTTAGGGTAGTGAATTTGTAATTAATTTACCGATGAGGAGTCATTACAAGAACTGTTGCTACTTTCTAACGTTGACAAATCATTATCTACAACTCCATCCCATGAATAGTTACAGATTTTAGTGCGAAGTAATGTACCAAGTGTCACGTTAATTGCGATGGCAAAGGAATCAATAAAAACGAGATTCACAAAGCGATTAATCATTTAACCCTCTTGAGGTAACGGGAGCATCCAGTGATACTTGCCCTATG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACAACCTATTCCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 6 2736676-2735927 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2736675 37 100.0 33 ..................................... TGCCAACAAAGAATGAATTAATTTTTCTCTGAG 2736605 37 100.0 33 ..................................... AGGCATTGCCGATGGTGGGACTTATGCAAGTGG 2736535 37 100.0 34 ..................................... TCCTTAGCTTTTCCCTTAGCTGCTTTGGTGCTTG 2736464 37 100.0 32 ..................................... GGAAGATGCTAAGAAACGCGGGGCATCTAATT 2736395 37 100.0 33 ..................................... ATCTCGTAGCTGATACTAAGCTAGCTATTTTAG 2736325 37 100.0 37 ..................................... AAGATGGGCAGGAGTATTTACATGATGCTGGCGTGAC 2736251 37 100.0 36 ..................................... GGGGTTTTGATTTCAGCTTGAACTTCTTGCTTTTCG 2736178 37 100.0 36 ..................................... GATTTAGAAGCAGCTTCAGCTTTAACAATTGCTTGT 2736105 37 100.0 33 ..................................... TTGAACCCAGGGCCAGAAGCCGAGTAACTGCTA 2736035 37 100.0 35 ..................................... CACTAAGCACCAAGCATAGGGGAATTTAGCATTAT 2735963 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 100.0 34 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : GAAGATATGGCAGTGGAATTACCCCTACTAAACACGCTGTACCTCTCAATCATGAGAGTTCTACTAATCCAGGTATCCAAGATAGCACTACCAATCAGCCGAGAATATCTTCTTCCCGCAAGCAGCCTTCTAACCTGATTAATCGCATCATGCGTTCATTTACCAAACCCAAAGGTGTTAAAAAGAGAAGAAGAAATTAAATTCCATCTTGTTGCAAACTTGGTAAAGTATAATCTGTCAGCAAACCAGTTAGCATACTCTTGCTTCCCAGAATGCGCGGATGGGTAGGTGTGGAAAATGTAGTCTCACTCAAAATAGGCGAAACCATTTGTGCATAAGACTTGCACCTATTTATTGATGTTCAACCACCCGCGCGCCTTACATAGAAAGACTTTCAGCTATTTTGGTTTTGCCTTTTTGCGATCGCCTATGTTATCATTGCTCCATCCGCGTAACAGAACCTTGAAAACCGCATATACATTAGCTTTGAAACTTCCGCC # Right flank : TTTGAGTACTGGCGTAGAGTTGTAACACAACGAGTTGAAATTTTATTGGCGTTGCATATTTGCGGGATGAATTCAGACTTCGGGAAAAAGCTAAAAGTCGATTCTTTGCGCCTTTGCGCCTTTGCGTGAGACAAAAATCATCCCATCAATCAGCAACGCCATTTTATTTACTCTCTGTCAGAGACCATTTATGCAGTGAATCTGAGGTAGGGTGTGTTACGGCTGTGAAAGGATTTGAGACTTAGAGAAAGATTAGATTTAGCCGTAACGCACCGTCGCGTGGATGGTGCGTTAGGCGCTAGGATAATTATTGCGTGACAAATCATATTGAAAATAAGCACCTAACACACCCTACAGCAAAATTTGACTTACTCTCTTCAGGATTAAAACCCTTTGCTTCCAAGCAAGCACGGATGATAAAAATGAAGTTGAACTCCATAAAAAAGCCCGCTTGTGCGGGCTTTTTATTGATTACCAAACTCTACAAATTGCCTATTACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 7 2813729-2812812 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2813728 37 100.0 34 ..................................... AATTACTCTGCAACCGTCTCTTGCATCGGCAAAA 2813657 37 100.0 34 ..................................... AACAGTTTTACAAACACAATGCAAGCCACTTAGG 2813586 37 100.0 41 ..................................... GTTTGTAATTGAACGTTAAACTACCAGTGCCTGCGATTGAA 2813508 37 100.0 38 ..................................... TGGTTGTGGGGCTGGGGCTTGCTGCCTGTCGCTGGCTA 2813433 37 100.0 41 ..................................... TTACTGATAAACAAAGTAAATTAAGCTTTTGCTTGGCGGGA 2813355 37 100.0 34 ..................................... AGTTTTCTCTAGAGTGGCAATCATTGTATTTATA 2813284 37 100.0 36 ..................................... TTGCTAATTTATCCTTTGAGACAGTTGTGCCATTGA 2813211 37 100.0 34 ..................................... GCAGAAGTTTGCAACACTCACCCAATTAATCAGT 2813140 37 100.0 34 ..................................... AGCACCTATCTGCCTCCAAACGGTTTATGCTCAA 2813069 37 100.0 41 ..................................... AAGACTTCGCTCTTGGTCGTAGCTCCACAGCGTACTCAATC 2812991 37 100.0 35 ..................................... GAGCCAACAATCAGTTTTTCTCGCAAGACGAAAAG 2812919 37 100.0 34 ..................................... GTGGGTGAAGCAAAACAGCGTATGGAAGGATACC 2812848 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 100.0 36 GTTGAAATTTCTAATAATCCCTATGAGGGATTGAAAC # Left flank : TGAATGTTGTTATATCCTACGATATTTCCGAAGACAAGCGCCGCACAAAGATTCATAACATTCTCAAGTCTTATGGGCAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTGAATGATACCCAGTACGCCAAACTGCGATCGCGCTTGCATAAGTTGATCAAAACTGATACAGACAATATCCGTTTTTACTCTTTATGTAGTTGCTGCTTTGGTAAGGTTGAACGTATTGGCGGTGAACCAGTCCCCGATGATACTATTTTCTTTGCCGAATGCGCGGAGGGGTAGGTGTGGAAAAACTAGTTCTCCCAAAAAGTAGGTGAAACTATTTCTCTGTAAGGCTTTCAAATTTTAATTGATGTCCAATTACCCGCGCGCCTTACAGAGATAGACTTTCAGCAATTTCGGTTTTGCGTTTTCACTATTGCCCGTGTTATTATGGCGCTATCCGCGCAACAGAACCTTGAAAACTGCATATAACTTGACTTTTGGGCTTCTGCC # Right flank : GACGAACGGGCTAAATCTCCGTTTGCGGGGATTGACGCATATCGATAGCGCCTAACATACCCTACATTTGATGGGTTGAGGCTTGACAACTAGAGCAGTCAACTATCGATTGCTAAAGAGGCGTTGCATATTTGCGGGATGAATTCAGGCTTCTAGACAAAACTGAAGGTCGATTCTTTGCGCTTTTGCGCCTTTGCGTGAGACAAAAATCATCCCATCAATCAGCAACGCCGCTAAAGAAAATTATCGATAATCTATCACCAGTAATGCTATTGCTGGTATTCTGAAAGCGGCAAGGCCATTACCAGAAAATTGACAAAGCAAAAGAAAAACAATGGAAGTCGCTACAACCAGAGTTCCCCGTTGGTTCGTTCGCAGAGATATTGATGGTTTATTTGGGCTGGCGCTGGATAATTTTATTCAAATTTTATTGATTGTTAGTTTGTGCCAAACAGTTCTGGGCTTTCCGGCTGAGTTAGTTTATGGGCGGATTTTGCCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTAATAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 8 3048820-3047181 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3048819 37 100.0 38 ..................................... AAAGAAATAGAGTTTTAAGAAATAGCCCTCACGTGAGG 3048744 37 100.0 35 ..................................... AACCAAATTACACGCCTACGGGCGTTTTTTTATGA 3048672 37 100.0 35 ..................................... AGTGGAAATAGGAATAACACCTAAAAGAGCAAATG 3048600 37 100.0 37 ..................................... CAATCACTTGAATGACCTTTGTATTTCTTTCCTCAAT 3048526 37 100.0 35 ..................................... AGGGAATTATCAAAGGAATTATTTGGAGAAGTCCC 3048454 37 100.0 40 ..................................... AGGGATGGTGTTCTAACTGACTGCTGCTTCTGCGCCATTG 3048377 37 100.0 33 ..................................... GAGCTTGTCTTAAATAGTCATTGGAAGAGTTTT 3048307 37 100.0 35 ..................................... TTTCAACTTCTTCAATATTGCTAGATACTCTAGAA 3048235 37 100.0 34 ..................................... ATATACTACTGATGCGCCTGTTTGCCTACCCTTT 3048164 37 100.0 34 ..................................... TAATTTTAGGCAAAATAAAAACCCCTCTAGTTGA 3048093 37 100.0 37 ..................................... AATGGAATAAATAAATGGTATTTTGAATAGAGGTAGA 3048019 37 100.0 34 ..................................... TCTACAAGGCAACCCATTCGGGCCAGGCTTGATG 3047948 37 100.0 34 ..................................... TTTATTGAGAATGTTGACCCTCCATACGGAACAA 3047877 37 100.0 35 ..................................... TTACTCAAAAGTATGCGGCTGAAATTAATCAGAAA 3047805 37 100.0 35 ..................................... AACTGTTGCACCCATCTCTTCAGGCGTATAGACTG 3047733 37 100.0 35 ..................................... CACTTAAATTCGTGGCATTACCTAGCATCAAATCA 3047661 37 100.0 35 ..................................... TCAACAAAACACGCTTTTAAACTCTCTTAACTCAA 3047589 37 100.0 36 ..................................... CAGGATACCGCAGAATTGATGAATTAATGGATGCGG 3047516 37 100.0 41 ..................................... CTCTTAGTAGTTTCTCAGCAAAACGGTTGATCGCCTCACAG 3047438 37 100.0 39 ..................................... CAAAGAATTAAAGCATCGCAATCTTGGACTATATATAGC 3047362 37 100.0 35 ..................................... AAGAGTAGGTAGCAATCAAGGTTTGATTGCATCAA 3047290 37 100.0 36 ..................................... TCCAGAACCCCCACTAAGCCCATACAAAACTTTGCA 3047217 37 97.3 0 ..........................A.......... | ========== ====== ====== ====== ===================================== ========================================= ================== 23 37 99.9 36 GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ACCAACCAGATCGGGTTCTCTATCAATGAGCGCTCATCCATAGAGAACATCGGTTCCTTCACAACCAACCAGATCGGGTTCTCTATCAATGAGATCTCCTTCACGCACAACCAGATCTCCTTCACGCACAACCAGATCTCCTTCACAACCAACGAGCCAATTTTTCGATTAACTAGCTCTCAATAATTGATGTTTTAGCCTTCCCTAATGCATTGGCTGTGCTGCTATGATTGAATATCAGCCGCCCGTAACGATACTCTTTTCTTGCCAGAATGCGCGGATGGGTAGGTGTTAAAAAAGTAATCTCACCAAAAACCGTTAAAACTATTTGTATATAAGGCTTCCATTGTTTTATTGCTTCTCAATCACCCGCGCGCCTTACAGGGATTGACTTTCAGCCATTTTGGGTTTGCTGCTTCATTCTTGCTTATGTTATGATTGCACTGTCCGCGCAACAGAACCTTGAAAACTATATATACATTGGCTTTGGGGCTGCCGCA # Right flank : TGATATTTAATTTCTCTGCACATTCCCTAGCCTGATTGAAATTTCACCTAATACCAATTTAAATAATGTTGGCGACAAATAAAGTCTTTGTAGGGGCACGGCATCCACCATACGTGTCAACTTAACGCGAAACCTGCTTGGTTGCAAGGTTTTTGCCCTCACCCCCAACCCCTCTCCCACCGGGAGAGGGGAGCAAGAGATTTAATTCCCCTTCTCCTGGGGGAGAAGGGGTTAGGGGATGAGGGCGAAAGTTTTGTACAACGCCCGTCCTATATAGCTTTTAGCTTAAGTTGACACGTATGGGCATCCACAATCTTTTGGTATATCAAATTATCTGACTGGTGCCCCTAAAATCTGTCGCATTCTTTTTTCAAAATGGTAAGCTATTCTGCTTTTAAGTTGCACAATCCCTCATGAGGTCTGTTGACGGTTGACCGTTGACAGTCAACCGTTAACAGTTAACAGCCTTCATGAGTAGTTATGCCATTTAGGCGCGCATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 9 3324334-3324090 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 3324333 32 93.8 38 ..G.....................A....... CTCCCTGCGGTCGTGGGGGCCCCGAGTTCCCCAGTCCC 3324263 32 100.0 40 ................................ GAGGGGGCCCCGAGTTCCCCAATCCCCCATCAAGGGCTCT 3324191 32 93.8 38 ..G.....................A....... CTCCCTGCGGTCGTGGGGGCCCCGAGTTCCCCAGTCCC 3324121 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 4 32 96.9 39 CAATCCCCAATCCCCATTACCCCTTATCCCCA # Left flank : TAGCTTCAATATACTGCCTTTGTTTAAAGGTTTTAGCGCGAATTTCTTCACCTCTGCGAGTTTTTGCAAGAATATCTCGCTGTAAATCTTGCAACTCGCCTTCTCGATGGGTATCTAAAGCTTGACGGGCGGTATCAATATCCGCACTAGAGATAGAATTACCTTTAATCCAGAGGTCTTCAAGCGATCGCACTAATCGTGAAGCCAAATCAATTTGCTTTTGTGTACCTGAAATATGTAAGTCCTGTCCGCGTAACACCAAGCTAGCGCCTGTTTGCTGAGATAAGAGTTTGAGATTCTCTTCTCCATCTCCAGCAAGAGCGATCGCACTGGGAATATCCGGCAGCTCAATCTTGAAGGCATCTGCCATAGTATTTGTTAATTTATCTTTTTATTTGCTATTTCGTATGGGCATGGGGCATAGGGCATAGGGCATTGGTAATGGGTAATTGGTAATTGGTAATGGGTGTTTGTTATTTCCCTTCATCTTCCTCATCTCT # Right flank : GAGGGGGCCCCGAGTTCCCCAATCCCCCATCAAGGGGAAAAGTAGAGACACGATGATCGTATCTCTACTTTTTCTAGGGTTGCTTTAATATGAGTTAACCACATTTAGCAAGGATGCTACCTGAATTTAGTAGCGGATACCTTTGCGTGCAGCTTCCTCTTTACGCTTGCGTCGTAAGCTAGGTTTTTCGTATCTTTCCCTGCGTCTAACTTCAGATAAAATTCCAGCTTTTTGAATTTTCTTTTTAAAGCGTCTAATAGCAGAGTCTATTGACTCGTTCTCACCTAAACGGACTTCGGCCACTCCCCAGTTTCACCCCCTTACAGAGATAATTCAGAGTTGCATAAAAATGTTAATAACAGCAGTATGGCGATCGCTTCTCTGGATGAGAAATACTCACCTGTTGAATTCTCAAAAGAATTTCGAGCATTTATCTAGTGACGCGATGCCTACGCCACTCATGCCAGATTAGCAAATTTGGATGTTTTTTCACAATTCCC # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATCCCCAATCCCCATTACCCCTTATCCCCA # Alternate repeat : CAGTCCCCAATCCCCATTACCCCTAATCCCCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 10 3528985-3529758 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3528985 37 100.0 36 ..................................... ATTTCATTTCTGCCATGTCCAACACTCACCCACACG 3529058 37 100.0 34 ..................................... ATTCCATAAGAGATTTTCTTTTGATTGGCTCTAG 3529129 37 97.3 37 ......................T.............. ATTGCAAGATGATCGCCTATTACCATTTGATCGCCTG 3529203 37 100.0 37 ..................................... TTTAACTTTGGCGATCGCTTGGTTACGCACATACCCA 3529277 37 100.0 37 ..................................... TTTTGCTTAATCTCCAGCCTGTTACCCATCCACTTTA 3529351 37 91.9 35 ...G.T..........A.................... GCCAGTGTGGTTGTCTCGCCTAAAATGTGAGATGC 3529423 37 89.2 42 ...G.T..........T.....A.............. TTCTTGACTTCTACACCTGCTGTATACATCTCGCAAGGCACT 3529502 37 89.2 36 ...G..A.....G...A.................... TAACCATATTCCCCAGGCTCATTCTTGGGGTCGATA 3529575 37 91.9 37 ................G.....A........G..... AGTACAATCATTTGTACAGCATTAGCTGCATTATCAC 3529649 35 81.1 37 C....--.A.......G.....A........G..... TTAGCAGCATTTTTGGCAACCTGAGCAACGTATGCAG C [3529661] 3529722 37 78.4 0 .........C.T....A....AT.........A.T.G | ========== ====== ====== ====== ===================================== ========================================== ================== 11 37 92.6 37 GTTTCCGCTAACACTTCCCCCGCAAGGGGATTGAAAC # Left flank : AGTAGTACTTCTTTTACTAGCCGATGAGCCAGCGCCAGGTGTGTTGGCTCATTTTTGTTGTGAGTATTTGTACCTTTTTCTTACTTTTAAGAAACAAAGTAAGAAAAAAGTAAGAAACGCGCATTTCTTACTTTGTAAAACCTATATAGGGTGCGGATTTCAAGAGCCAATGCTACGCAACATTCTTGCGCGGTCGTACCTCTGTAGTAAAGATTTTCAGTACAACTCTATTAACTTATTTATCCTACGCTTGACAGGTTTTAGTAGCCTATTCTACTCTGTTGTCTAACTTGTAAAAAGTTGGCATATCGAAGCGAGGTCAAAAACCTGGCGTATACGCCAAAATCGTCAGAACCTAGACAAATCAATAGTTACAGCTTTTTAGCTATTAGGGATATTAGGAATTAGTTTCAATAACGGAGCCTGAAAAAGACCTAAATTTTCGACCCGTCAAATTCCTCCCTGAAACACTTGCTCTGTCATGGTTTCAATATGGCAGG # Right flank : GGCGATCGCCGCCAAGGGCATCGCACCGTAAACGGAAAACCCGATTGAGTTAAAGCCAGGGCGCTAGTATTGACCCTGGCAGTTTTCGATTATGGACAAGCGAGATCAGTCGCCGTAACGTTACAGTGACTCAAATCTCGCCTGCCACAAACGAAAAACTTTAATGCAACTGGGGGATGGGCATTGGGTGTTGGGTGATGAGCTTGGTAATAAAATTAACTCTTTCCCATGCTTCGATACTGATTATGGGAATCCCCATAATGCTCTGCGATGGAGCAAGCGCCCCAGTTGCTCACACTTCCATCACGGTTAGCTCGCCCTGGCAAATCCTCGTGCCTGCCCTTTGTGGCGCTGCACAAGGGGTGCGGCGTACTTGTAGCCCTTATCTATCAGGCGCGCATCCCTCGCCCGCTTAAAGGCGAATGTCGCCGCCTTTGCCATCAAATCTACCGCTATGGCGATCGCAACCAGGGCGCAAACACCAATGATTGCTGGGCTGG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:0, 3:3, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGCTAACACTTCCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 11 3681332-3680368 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3681331 37 100.0 32 ..................................... AAGTATGGCACTATAGTAAGCAAGGCTATTAG 3681262 37 100.0 32 ..................................... GCATTGTTCCAAATATTCAATCAGAATTGTAC 3681193 37 100.0 34 ..................................... ATAGCACCAGAGCCACACGTACTCAGGGACAGAG 3681122 37 100.0 33 ..................................... TAATTTCAAAAAGTAAAATACATGTATTCATAA 3681052 37 100.0 34 ..................................... TAATGTTTTTATAATCACTTCTTAGCCTGTTGTA 3680981 37 100.0 36 ..................................... GATGGACAAGTTAAAGCAGAACTACCATCAAAAAAA 3680908 37 100.0 35 ..................................... TTTGTGGTGGGATGTATAGTAGCCATTCTTTACAG 3680836 37 100.0 35 ..................................... TTTTTTGTTGCCTAAATTAGACTAATTTTGAAAAG 3680764 37 100.0 34 ..................................... CTGGATGACTTCGACTTGCAGTGGACAGAGCGTT 3680693 37 100.0 34 ..................................... TGCTGGGCGATCGCTTCGATTTCATTGATACCAT 3680622 37 100.0 37 ..................................... CAGAAGCGCTCACCTTCTGGTTCCGAAACAAACCACC 3680548 37 100.0 35 ..................................... ATCCCGAAACCTATGCCTTGATTTTGTACTGTGGC 3680476 37 100.0 35 ..................................... CGACTTTACACAGATATTCTTAATGGTACATGCCA 3680404 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 100.0 34 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : AGCACAATCGGAAGTTATGCCGCAGGAATTTGCCAAGCTCATAGTGCCAACACTGTTGGTAGCTGGAGAGTATGACAAGATTATTCCTGCTGAGATGGGGCGACAAGCAGCCACAATGAATAACAAAGTTGAATTTGCGTTGATTCCTGACACAGCACATTTTCCTATGTTAGAAGATGCTCCAACTTACCTACAGCGAGTGCGGGAGTTTTTGCAAATTCCCACAAAAGTTGATTAAAGTTGATGTCCAATCCGACGATTTTGGTTGCAGAATGCGCGGATGGGTAGGTGTTGAAAACGGCATTTATATATAAATCGCTGAAACTCCTTATATGTAAGAATTTCAAAGATTAATTGCTGTTCTATCATCCGCGCTCCTTACGCAGACTGGCTTTCAGCGATTTTGGTTTTGCTTTTTCTCTATTGCCTATGTTATGATTGACCTATCCGCGCACCAGAACCTTGAAAACCTTATATTGCTTGACTTTCAGGCTTCCGCT # Right flank : GACATCAGAACTGGCATAAATGCTGATACGACAAACAGTAAACCTTAAATTGTAGTGGACTGACACGCCTACAATGAGGCATTAGATTTGATTAAATTAACCGCAGATAAACGCCGATAAACGCCGATGAATTTTTGCTATTGCATCAAATTAGCTGTGTCAGTCCAGTAGGATGCGTTAGCGATAGGGTAACGCATCGAGAAAGATGGTGCGTTACGGCTAATTATTACTCTCTTAAGTTCCGAAATCCTTGCACAGCCGTAACACACCCTACTTAATATTTACTTTATAAGTAGCCTCTTAATCCTTATTAGGGATTGAAATATAATTTATTCAACTTAAAATTGCTGTAAGTTTGGTTGAGAAATAAAATTTAAATTATTCTCAATTTCTCAATTCCTGCTTTTTTAAAACCGTATCTAACCAAACTAAATTTTCTGCTGACACCGCAGGTACAGGTTCTTGATTATAGTCAATCACTAAATCATAGTTACCTTCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 12 4481251-4480874 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================================================================================================================================== ================== 4481250 35 82.9 162 T......................GG....CC...T AAAAAAATATCCCAGTATTTATTGTGGGGTGGACATCTTGTCCGCCCAGTTTATGTGGCGGGCAAGATGCCCGCCCCACAAGATGGAATAATTTATTTCTTGGAAGTCCCTAATTGATTGAAAACAACTCATACTAAGGTACATATCGTACTTGTTACTTCA C [4481222] 4481052 35 100.0 36 ................................... AAATTATGAGGATTCATATGAGCGGGCTGACGCTAT 4480981 35 100.0 38 ................................... CGCCTGTTTTGGGGGAAGCTGATTTGGATTAAGAAAAA 4480908 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================================================================================================================================================== ================== 4 35 95.7 79 GTTTCCATCCCCGTGAGGGGTAATTGATTGAAAAC # Left flank : TTTTTGCTTGGTAGATACTAGTATCCTTTTCACAGACCCATACTTTAAAAAGACTTGTCTGATATCCTCATCTTCAATTTCATGGGATAGATTACCAATATAAACTGACATAGAATATCTCCGAGCTAACAGAATGTAGAGATTTACATTTGGAGAGGTATCTCTATAGTCACTTGACCAAAAATATTTCTCAATAATTTAATAGTAGCATGGTTTTAAATTTTAAACATATTTAAATCAGTACAGGTTTAAGTAGCTTGGTTTTTTAGCTTAAAAATTTATCAAGAGAATAAACCTCAGCCCATTAACTAAGGTAATAAATATTTTTTATAAGTAGACGCAACTGATAAGTCAATTAGCCAGTACAACAAGGCAAAAGTCAAAAGTTAAAGGTAAAAAGAAAGAATACTTATCCCACCAGATTTTTAGCAATTACAGATGGTCTGTTTATTTACGCCGACTTGTACTAGGCAGTTACCTACTTTCCCAAAACTCCCTTC # Right flank : CCTACCCTTGTAGAAAGCTTATTAAATAAGGCTTACAGCACCATAAAACTGAGGGGGGTCTGTTTTACCTGTCAACAAGCCACATTTATTGACAATATGGACAGCCTGCAAGTGCCTCAAACCCTTATAGAGTAAGTTATCTGAGGGGGTCTACGAAAGAATCAGCATTTGAGCTTTTGCACGACCCCCTCAGGTTACATTTCTTAATAAAATGGCTTAAGGAAACTAACCATGAGGTTACAAGCCAAAGATATATATTTATTGAATTTTCAAGGTGCAGCGATTGGTATAAATAGTAGCATAGCCAATTTTCAAAGGCAATCTCTGCCTCACAACAATTTAATCAGCAAAAGCAAGTATTGCTTTCTTCAAATCTGCTTTGGCTTTCTCAAAAGCTGTTTGTGCTTTCTCATTTCAGTGTATTCAGCAAGCCAAAGCAAATATTGCTTGCTCAAAAGCTGTTTTGGCTTTCTCATTTCAGTGTATTCAGCAAGCCAAAG # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATTGATTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 13 5492871-5492690 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================== ================== 5492870 38 97.4 33 T..................................... TTTGAATAATACACTACCCCAATAATACAGCAA 5492799 38 100.0 34 ...................................... CCCCGCAAATATCTGGGGGCATCAGAGCAGGTAC 5492727 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ================================== ================== 3 38 99.1 34 AATTGCAATTAACACTAATCCCTATTAGGGATTGAAAC # Left flank : GGTTATTGTCATGCTCTTTAAAAGCGTGAATGCCTAATTGCTGGTCGTTAGAGTTTGCCCTTTCCAATGTATACCAGATAGACTATGACAAAAATTTTATGACATTGACAAGACAAATACAGCAAGTTGCAACTTGGTGAGGTACGGCTATACAATTTCAATGCTTAACAGCTTATCGGGTGGAAATAGTGCTGATTTTTGCGAGTGCGATCGCCTATCAAATGCTTAAAGCGTTTGTTAAAGTTGAAATGCAAAAGATTTTTTAGCTCAATGCGCGGATGGGTAGGTGTAGAAAATCTCGCCGTTGAACAAATAGTTGTATTCCTTATAGGACAGTCTGTTGGATAAAAATTAAATTAAAACTATCCGCGCACCTTACCCAGACTTAGTTTCAGCATTTTTTAAAAAATTAATTGACATTTTTATGTGTTATGATTAGCCCATCCGCGAAACTGAACCTTGAAAACCAAATAGAGACTAGCTTTCCGGCTTCTGCCGCT # Right flank : TAAAGCAGAACTCCACCACATCATATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTGCAATTAACACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 14 6030557-6029995 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 6030556 36 100.0 47 .................................... AACATAGCTACCTAGGCAGACTCTCTTTATCCTGTTATAGTCGGCAG 6030473 36 100.0 38 .................................... CTACGTCCCAATCCCATTTGCAGAGCATAGGGTGCTGG 6030399 36 100.0 36 .................................... GGTGACTGGGGTATTGCTAAACACTGGTCTAAGATT 6030327 36 100.0 37 .................................... TGGATATCACCGTCGAAGCCTTCGGTTTCTTCAAGTA 6030254 36 100.0 39 .................................... CCGATTTGTGCATGAACAGCTTCCTTCCAAGCTTGAACG 6030179 36 94.4 36 .............T......A............... ATATCGCTGTATATCCAACAAGCGGTATCGGACTTA 6030107 36 97.2 38 ....T............................... CCAGCAGTATGACCAATTACTTTAGTTTTATCTGTACT 6030033 36 86.1 0 .............T.C.....T........T....T | G,TA [6029997,6030000] ========== ====== ====== ====== ==================================== =============================================== ================== 8 36 97.2 39 GTTACGCTTACACCTACCCCGCAAGGGGATGGAAAC # Left flank : GTTAACAGAGAAGGAACCGAAAAAAGCCAGTTCTTTGCAAGAAGGACAGATGGTTAAGGTAAAAATTGTGTCTCTCAAAGAAGATGGCAGCATTAAAAGTGTAAAGTGTGTAAGTTAACTCAGTATTTGAGCTTAAAGTTTTTTATAGGTAAAGCTTGACGAAGATAAGTTATTGAATTAAGTTATTTACATTGCAAAGTTACTGTAAAGTCCTCAGTGCTTTCTCTAGCTTTTTTAGACCACAGAACCTTGAAAATTCAATAAATATATTGTGTTTCTGGGGTAGATTTCCATACTACCCTGGACAGGAAAAAGCGGTTTTGCGGCCGATCCGCCAAATCGCTGAAACCCTAATTTTTTCGTGGAATCGGCCGTTCGCTTATCCTGTAAGGCTTTCAGAGATTTTTTCTGGATATTTTGCTGGCGGAAAAGCAATAAAATTAGTATCGGCCGCAAACCGCCTCTAGAAGCTATATAGGATAAGGGTTTCAAATCGAGGG # Right flank : TATTCACCCATACACTCAGGTTTGAAAAGAGCGATCGCTTTTTCTGAGAATGATTATTTTTCGCATCAAAGATTCAGCCAACCAGACTGCAACAATGCGATTCGGCAAAGTTTGCAACTAACATGAATTGGAAGGATAAATTTTACACTAAAAAGTCAAAAAAACTAATTTATTTTTAATTCATAAATAAATTCTCTTTGAAACAGAAAAATAATCACCACTAATATTGAGCGATTGTTTTACAATCTGTAATATTTTGCTGATTCCCTTGAAAATAAACAATTTCAGCAATTACAGACTGCGTAAAAACCTAATTTTTGCTTTACATAACTCAACAATTGTAGAGTTAATAACTAATTACGAATTATGTTGAAATTGATCCCTATTTATTTTTAATTCAATGTCCAATGCCTGGAAATTACATAAATATCAATACCACAAGAGATAACATTTTAAACTCATATCAATTCTTGATGGATCTGCATAGAATCAGATCCCCC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACGCTTACACCTACCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 15 6712341-6713254 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 6712341 36 100.0 40 .................................... AAAAAAGGTTTTCCTTTTTGTTTAAATGCAAGAGGGAGTA 6712417 36 100.0 35 .................................... ACCTAGATAACCCCCTGAAGCTGTTGATGCTAAAA 6712488 36 100.0 37 .................................... TATTTGGTGTATTTTGATTAATTTCATTTACAACCAA 6712561 36 100.0 35 .................................... CCTTCAGGGGTTACGGAAGCCTGTGCGTTTCCAAT 6712632 36 100.0 36 .................................... TTTATAATGCAAAGCATTCATAAGACGCATTTCTAT 6712704 36 94.4 42 ...G..G............................. GTGTAAGTCTTGAGGAAATCCAAACCTTGATAGAGCATGAAC 6712782 36 94.4 41 ...G..G............................. CCCTGCTCATGATTGGTCAAGACCCGCAGAATGTCGTGGTC 6712859 36 94.4 38 ...G..G............................. TTTGAATAACAGGCCTATTCGCAAGCCATTGAAGGCAA 6712933 36 91.7 35 ......G.......A......C.............. CCGATCAGTTGCCGTCACGGTAACAGTTTGAGGCC 6713004 36 94.4 34 ......G..............C.............. CCTGCTTTCCAAATGGTCATCTTCGCGCAGATGT 6713074 36 94.4 37 ..............A.T................... TGGATAGCGTTCTGATCTCCCCAAGCGCCGCCATCAC 6713147 36 86.1 35 ......G...G.A........C.....A........ CGACGAATTGCCCAGCGCAGTTGAATTTCTATTTG 6713218 36 80.6 0 ......G.....A..A.....C........AA...T | G [6713222] ========== ====== ====== ====== ==================================== ========================================== ================== 13 36 94.6 37 CTTTACAATCACCTCGCCCCGAAAGGGGATGGAAAC # Left flank : TTTAGCAAACAAAAGTAGATATTGCTTTCTCCAAAGTTGCTTGTGCTTTCTTCTTTGACTGTATTTAGCCAGCAAAAGTAGATATTGCTTTCTCCAAAGCTGCTTTTACTTTCTCATTTCAGTATATTCAGCAAGCAAAAGCAGATATTGCTTTCTCCAAAGCAGCTTTTACTTTCTCATTTCAGTGTATTTCGCAAGCAAAAGCAATTATTGCTCAAAATCCACCAGTGAGATTTATGTAACAATTAAGTAATAAATTTGACTAAAAATCGGCAAAAGTTGTATTTTAAGGATAGTTTGTGTCCTTCATCGACACCACTCGCCCGCACCTTGAAAACCGCATAACTTCTTTGACTGGTGTCGATTGCCTACGCAGCAAAGCTTTCAGGCTTTGACAGCTTGAGTTTATTGAGAATTTTTCGGAGCTATTGACACTCAAAAAAGTGGTGTCGATTGAGGGGTCTCAAATCCTCTCCTGGCAAGGTTTCCAAAAGTGAACT # Right flank : TCTATTAGTAGTAGGTGCAGTCACAGGAAAAGCATTCTCTAGGCGATCGCATCACCTTGTAAGGGCAGAGAAAAAGTGAAGATAAGCAGTGCGATCGCATATCCTCAAGCAAACATTGCCGTCCAGATCCCCGACTTTTTCAAAAAATTGGGTATCTAAATCCCGCGTCAATCCTCAGTGGTGCGTTATACTGCAGGCTGACGCACCTACCGCTTTGTGATTTGTCCTTTGTCAAAAAATGACCAATGACCAATGACAAAATGAAATTTTTCCGGATTTGAATTCAGGAAAATAGAGATCCTGATTTGATTTATACTTTTAGATTCGTCTGATTATCGAAAAGCTTGAAAGTTGTATGTCCAGCCCCAGTCCCGACACAGTTCGCGTTTATTTGCAAGAAATTGGTCAGTATCCCTTGTTAACAGCAGACCAAGAGATTGCTTATGGTAGGCAGGTACAGCAAATGATGGCCATCGAGCAACAAAAAGAAACGCTCCGCC # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACCTCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : CTTGACGATCACCTCGCCCCGAAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 16 7916625-7917162 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 7916625 37 100.0 34 ..................................... ATTATAAAATGAAACTTTACTGAAATTTCTAGCG 7916696 37 100.0 33 ..................................... GCAATGCAGATGTGCAATGAAATAATGAATGCT 7916766 37 100.0 37 ..................................... TAATTGCTGCTCAATTGGCTTTTTGCTATTTATCCAG 7916840 37 100.0 35 ..................................... CGTACTCATCACCAGGGAATGGGGCGGTATCGCCT 7916912 37 100.0 34 ..................................... AACATATCGCCCCCCATCAGCGGCCAATCTGCTA 7916983 37 100.0 34 ..................................... AGAACAATTTTATAAAATCTATGACCTCAAAGAA 7917054 37 100.0 35 ..................................... ATTAATTCATGTCCATATCCCGACGACTCATAAAA 7917126 37 73.0 0 ..........................CTC.CCATTCG | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 96.6 35 GTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAAC # Left flank : CGGGTTGTCTATCAACGAGCGCTCATCCATAGAGAACATCGGTTCGTTCACAACCAACCTGATCGGGTTGTCTATCAATGAGCGCTCCTTCGTTCACAACCAGATCTCCTTCACGCACAACCAGCTCTCCTTGGTAACCAACCTCGTCAATTTCTCCACTAACCAGCTCTCAATATATTGATGTTTGAGCCTTCCTAATGCATTAGCTGTGGTGCTAAGGTTGGATATATGGGCAGAAAATCAGCCCGCGACGATACTATTTTCTTGGCAGAATGCGCGGATGGGTAGGTGTCAAAAAGGCAATCTCACCAAAAACAGCTAAAACTATTTATACGTAAGGCTTCCACTGATTCATGGCTGTTCAATCACCCGCGCGCTTTACAGAGATTGACTTTCAGCCATTTTGCGTTTGCTGTTTCATTATTGCTTATGTTATTATGGCACTGTCCGCGAAACAGAACCTTGAAAACTATATATACATCGGCTTTGGGAGTTCCGCC # Right flank : GCGTAATCCAAATCGGAAATAATTAATTCCCAAAAAACCATGAAATTCCTACTATATATAGCTTTGGTTTTGGTAATCAGAATAGAAAGCTTACACTTACCCGATTTCCCTCAAAGATTTCAGTAGGAATCTGAATGTATCGGTGCGATCGCACCGTCATCGCACTGTGAACTAACCACGCCTCTAAAGGGTATATGGATAAAAGTTTGATGCGATTAATCCTTTTGTTGTAAGCCTTTTAACCATTTTGATGAATTCTTTATTTTCAGAATCGATTACGCGAACGATGAGCTATTAGGGATTGAAACGAACAAATGGAATTATCGCCAGTCAAACTGTATCGTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAACCATCAGCCAAATAACTAAACTCGCTAGCATCCATGTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAACAACCAGTCCGTCTACCAGGGAGGAATACTATAAAGAAGTTGAAATTTCTC # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 17 7917504-7918208 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 7917504 37 100.0 34 ..................................... CATCAGCCAAATAACTAAACTCGCTAGCATCCAT 7917575 37 100.0 37 ..................................... AACCAGTCCGTCTACCAGGGAGGAATACTATAAAGAA 7917649 37 100.0 39 ..................................... TTATTGATAGCAGAAGGAGACCCCAATCTTCCATTTGTG 7917725 37 100.0 38 ..................................... AATAGTAATGCCGATAGGCAGGGGTTGACATTCTACAA 7917800 37 100.0 34 ..................................... ATTACACCATCGGGAATGCTCCAGGTTCTCAGCA 7917871 37 100.0 40 ..................................... AAGCAATCGGGTAATGTACGGAGCGCCAACGGGAAGCGGC 7917948 37 100.0 34 ..................................... TTCAATACTCTAACTCTATCCCCCCAACAATTAT 7918019 37 100.0 34 ..................................... AAGACTACGACGGATAAGCAGCAAGGTTAATACT 7918090 37 100.0 45 ..................................... AAGTATTAGCCGCATTAGCGGAAGTAGTAACGATAGTGGCAAGAG 7918172 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 10 37 100.0 37 GTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAAC # Left flank : TATTAGGGATTGAAACAGAACAATTTTATAAAATCTATGACCTCAAAGAAGTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAACATTAATTCATGTCCATATCCCGACGACTCATAAAAGTTGAAATTTCTCTTAATCCCTATTACTCACCATTCGCGTAATCCAAATCGGAAATAATTAATTCCCAAAAAACCATGAAATTCCTACTATATATAGCTTTGGTTTTGGTAATCAGAATAGAAAGCTTACACTTACCCGATTTCCCTCAAAGATTTCAGTAGGAATCTGAATGTATCGGTGCGATCGCACCGTCATCGCACTGTGAACTAACCACGCCTCTAAAGGGTATATGGATAAAAGTTTGATGCGATTAATCCTTTTGTTGTAAGCCTTTTAACCATTTTGATGAATTCTTTATTTTCAGAATCGATTACGCGAACGATGAGCTATTAGGGATTGAAACGAACAAATGGAATTATCGCCAGTCAAACTGTATC # Right flank : CTGCCAAAATCGGAACGGGCATCAATAAAGTCTTTGTAGGGGCACGGCATCCACAATCTTTTGGTATATCAAATTATCTCTTACCCTTTCACCTTTTCCCCTAACTAAATTCCCAGTTGAAAATCCTTAACCGAGCAGTATTGCCTCGCGCCCTCATCCCCTAACCCCTTCTCCCGCAGGAGAAGGGGAACTAAATCTCTTGCTCCCATCTCCCCGTGGGAGAGGGGCTGGGGGTGAGGGCGAAACCTTGCACAAGAGCGGGTTTCACGTTAATTTGACACCACTGGGGCAATGCCTTGCCCCTACAATCTGTCGCCTTCTTTTGTCAAATTGGTATAAGATTTCTCTTCTCTATGCTTTGGCTTTGAGGGTAGATGATTTTATCAACTCATCTACTCACCCACTTTAAACCTTTGACTCAACTACTTGTTGCACTCCATTTAATTGCTGAGGCAAACTCCAGTCAGGACGCAAGTTAGCCGCATGACGTAAATATATGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 18 7991493-7992185 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 7991493 37 97.3 35 ............T........................ CATAAGTTATTGGGGCAACTATACTTGGCAGAAGC 7991565 37 100.0 40 ..................................... ATTTGGCGCTTACGCCGCAGGAGTGATACTACTATGAAAC 7991642 37 100.0 36 ..................................... GGGAACGAAACCAACTCCGAATTCTCCATTAGGAAA 7991715 37 100.0 34 ..................................... TCTATCAAACCTATAACCATATATTCAGCAGGAA 7991786 37 100.0 37 ..................................... TCGGTGAAACTTAGCCCAATGCTTCTGAAATCTATTA 7991860 37 100.0 34 ..................................... CATCACTAATAGATTTAGCTAGTTTGGAATTTTT 7991931 37 100.0 36 ..................................... TATCAAAACCTTGTGTAGCTACAGGATTAACTGAAT 7992004 37 100.0 37 ..................................... CACATGGATGCTCAAGTGAAATGTTCTAAAGGCGGAG 7992078 37 100.0 34 ..................................... GCGTAAGATTCTTTTTCTATATGTACATCTTTAA 7992149 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 99.7 36 CTTTCAACCCACCACCAGCCGTGAGGGTTATTGAAAC # Left flank : GTATCTTAGTTAAGTCCTAGGAGTAGAAATTCTCATTTACTCATCTTGACAAAGATAATATTATTCAGCCATAATTAGAAACGCGTATTCCGGGGTTATAGCTCAGTTGGTAGAGCACTTCAATGGCATTGAAGGGGTCAGCGGTTCGAATCCGCTTAGCTCCATCTGTACATTAAATATTTATTGTCAGGTTTAAAGAATTATTGTCCATTTTGACGTAGTTAAGGGACATAAGTAACCTGTTTTCTTGACTTTCAGTACTCAAACCAGTTTTAAATAATTATTGTCCAGAGTTGAAACCAGTTTTAAATAATTATTGTCCAAAATTAAGTTAAGTTTCTCGCTAGATACATTGACTCTAAATGTATCTAGAGATCTATGGGATCAACTGCACAGTTTTAGGCAATATGCCATTGAAGTGCTCCTTTCAAACCACCCTAATAAATAATTTTACAATAGAACACATAATAGTGAAATTGCTGAAAACATAGCGATAAAAT # Right flank : CCCCGCACTTGTCAAACTCTTATCCTGACTATTTTCCAGAAGCGATTTTGGCAAGTCTACTTAAAAGCCTATTTTCTATCACTAACAAATAAACTTGCATTCGCATTGAAATGAATGAAATGCAGTCAAGACAATAGTTTTAGCCATTTGGCAGCACTCCAGGGATTTTGCTCCTGCTTTGACTTGCCAAAAATAAAAATTAGGGGGTGGTAGTTCGGTAGCCACCATGACGGTATACCCGTACCCTTACTTTGCTGTAAAGTAAGAGGTATTGATGTCCTCATACAACCAAAATCCCAGATTTCAGTCATATAGTCCGCTCTGTCACCTAACACCAAGGAAAAAGAGTTTGATGTCAAGAGCTAAGGTTCTGGGCTGTTTGGCACCCTAACACCTTATACTTCCCATGCGTCTCGGTGCGAGTCCTTTCTCATCTAACAGCAGCATTTGCTTACCCAAGCAATTACTGCTAACAAACGCTTAGATGAACGCACAGGTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCACCACCAGCCGTGAGGGTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : NA // Array 19 8872643-8872385 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 8872642 37 97.3 36 ..................C.................. ACCCAGTAACGCTTCATCTTCTCTCACATACTGTGT 8872569 37 100.0 37 ..................................... CTTTCAAAGCAGGTGTAGAATTCATCGCAACATGCTG 8872495 37 100.0 37 ..................................... TTGTCCCTAGAAATGTGTTTGTGATTATAAAAAATCG 8872421 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 99.3 37 CTTTCAACCCGCCTCAAGTCGTGAGGGGTATTGAAAC # Left flank : CCTGTTACCGACTTCTGCAAGCAGTCCATTTCAGCTAGAGAAGTGCGATCGCCAACTCATCTGCAAATTTTATCCTCGGCGTGTTATAATCGAAAAGATTAAGGGCGCGTGGCTCAGTGGATAGAGCAACAGATTCCGGTTCTGTGGGTCGGGGGTTCAAATCCCTCCGCGCTCGTTTTGTGTCGATTGCCAAATTATTTGTCCGTGTTGACAAATTAATGTCCATATTGCCAAATTACTGTCCGCGTTGACAAATTATATTTGACAGCAATTTTCTGCCGTATATCAAGTATGGCAGAACTCTTCTTTATATGGAGCGACTAATTAGTATTTAATATTTAGAGCAAAAGTCAATCTCTCGAAACAAAGAATCTGTTGCTCTATCCTTTCAACCCACCTAAAAACTTTTTGCTCAGTGCCAACCCTTGAAAATAGTCAACTGCTCACTCTTGTGGCGTTACATATTTGCGGTTTGTATTACCTCTCAACTCAGTAAAGGA # Right flank : TCAGCGCCTCAAATCCTTCACCAGCAAAGACTTCCAGAAGCATTTTTGTCAGATCTGCCAAAATCGCCTGTCTGTTAACACTTAAAAAAGTAAATTAACTGACATCATAAAAGCTACGAGCCTTAATCAATAAGCGATTTGAAGTTTTGGCAGATCTCCAGGGAAATTGACCCCGCTTCGATTCGTCAAAAAAATAATTAAGGTGGGTTCCTCCTTGGTTGGAGGTGATTATGTAGCTACCACTGCGGTAAACCCGCACCTCTTTGCTGGGGGCGCACCTTATTCCTGTCTTTAAGGGACAGCAGCTTCAAGGTTGGTAGAACGACTACAGGGCCAGAAAGCAAGACTGTCTTCCAACAGTCAAACTAACCCACATTTACACAGTACAGAGGCTTTATACAAGCATGAACTGCGGCGCTATTTATTGATATTTATTCTATTTTCAAGGTTCGGTGTTTTGTCAATCAGGTTTTTTGGCGATAATTGTAAGCAGCGATCGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCAAGTCGTGAGGGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA //