Array 1 52587-52375 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QTKW01000027.1 Halomonas litopenaei strain LZD012 NODE_27_length_60714_cov_67.4855, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     52586	    29	  89.7	    32	.T.........A..G..............	TACTGCGACGGCTATTCGAGGAGGGCGTTCTA	
     52525	    29	 100.0	    32	.............................	TCCACCGATGGCCACATCGTCGAATGGCGCTC	
     52464	    29	  96.6	    32	..............C..............	GAACCAAACAAGCGACTCACGATTGATATCCC	
     52403	    29	  93.1	     0	T........................G...	|                               	
==========	======	======	======	=============================	================================	==================
         4	    29	  94.8	    32	GAGTTCCCCGCGCAAGCGGGGATGAACCG	                                	       

# Left flank :   GGTGATGGCTTGGTACGTCGCCCAGGAAAGAAGAAGGGCTCCTACTGGTGGGGGTGCAGTGGTTTTCCGAAGTGCGATTTCCGGGCATTCGACAATAAAGGGAAACCGAAAATTGGAGATGGGAATGAGTGAGAACAGCTCAAGCCTTTACTGGATATCCCTTCCGGATGGAGTGGAGGAGAGGGGCCACGACATGCCATTGATTATCACTGTCGCCGTGTTCCGGCAACAGGGCGGCGAGGTGTTATGGGAGCTCCTTCCCATGACGGCAGAGATCCTAGATGGCGTGGCAACCCAACACCACCGTGAAGGGGCAATTACCGCAAAGGTGCATGAAGGGACGGATATAGACGGTGTGATCCACAATGTCACGAAGATGCTTGTTGCGCCCGTGGCCAAGGAGACATCCCTAGTCGTCTTCTGCCAGAATGGTGAAACCGCCGAGAGATTCCTAGACGTGGTGCGTAAAGACCAAAGGCTCAAACTGGAAATGCGCTAGA
# Right flank :  CGCTCGTGCTCTTCTGTGAGACGAGCGGCGGCTGCCATGCCATGGTTCTGCCGTTCGCACGTGCGAAACTGAAGGCGAAAGATGGCAGGGTTGCATGTAGCTGTCGCGAGGTGTCACACTTTGTATTACACTGAATGGGTCACAAGGATGCGTGGGGATGAGGATCTTCAAGAACGCTTGGTTCGAGCGCTTCGCTAGGAAGCAGAAGCTTGAGGACGCAGCCCTGCGTGATGCCATCCAGCGGGCCGAACAGGGCCTGATCGATGCTGATCTAGGTGGAGGCGTCATCAAGCAGCGGGTGGCTCGTCCAGGGCAAGGCAAGTCGGGCGGCTACCGTACGATCATCCTCTATCGCCAGTCACACCGCGCCTTCTTCATTTACGGCTTCGCCAAGAGTCAACAGAGCAACATCAGCGACGAGGAGAAGGCTGCGTTCAAACAGGCCGCACAGCACATCCTCGACTTGTCAGAGGAGCACCTGGTCGAGATGATTCGGAAGG

# Questionable array : NO	 Score: 3.79
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCAAGCGGGGATGAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-8.90,-10.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [2-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,5.51   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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