Array 1 6703-2947 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMDW01000027.1 Halonotius pteroides strain CECT 7525 NODE_27_length_34416_cov_170.221, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 6702 30 100.0 35 .............................. CCGTATGCCGTAGGTGAGGTTGTGGAAAATCAGGT 6637 30 100.0 36 .............................. CTGACCGAACAGACGGTCTCTGTCACCGACAACGGT 6571 30 100.0 36 .............................. TCTCAACCGTCACGTCGCGGGGATCGACAGCCCCGA 6505 30 100.0 35 .............................. GGGCAATCTCGACGCCGATGTCCCCCAGACCTCCG 6440 30 100.0 36 .............................. TGGCGATTGTACCGAATTGTCCACGTCGACTATCGC 6374 30 100.0 36 .............................. AGGCTGACGACGTGGCTGCCAACGTCAACCCTGAGA 6308 30 100.0 36 .............................. GGGATCAACGCTGGCGTCAACATCGTCCCGTTGGAT 6242 30 100.0 35 .............................. TTGGAAGGCTGAGGGCGTGGTTTCGAGGGCTCCGA 6177 30 100.0 36 .............................. GTTTATTTGCTCTCTGGCGGCCTGTCTGATCCGCTG 6111 30 100.0 36 .............................. CTTGATCAAACGCACGTAATGATGCCTGCAGCATAC 6045 30 100.0 34 .............................. CGGCGGCACTGATGCCGATTGTTGACAACGACGG 5981 30 100.0 35 .............................. GGGGAGTTCGTCGCGGTTGCCGCTCATCGACGATC 5916 30 100.0 36 .............................. TGTTGGAGAACAGCCGACAGAAAAGAGCGGCGGCCG 5850 30 100.0 36 .............................. CTGCTTGCGCCACGTGATCGGCACCGGAGCGTCATC 5784 30 100.0 35 .............................. TTCCTCAACGAGATCGCCACGTGCGACTTGCTGTG 5719 30 100.0 35 .............................. CACACGCTGACTGAAGAGCAGACGGACAAGCTCGC 5654 30 100.0 36 .............................. CGCCATCGGCTCAAGATCCCGCGTGGCGACAGCGAG 5588 30 100.0 34 .............................. TCCTTGAACGATTTTTTCGCGGCTTCAAAGTTGT 5524 30 100.0 36 .............................. CGGCAACTCAATGAGTGCCTTGACCAACTGCAGTTG 5458 30 100.0 36 .............................. GGGATTGTATTGTCGACATGTGTCCAGTCGGTGAGG 5392 30 100.0 34 .............................. AACGCAGACGACTTTGCTGTTGATCGCAGCGGTG 5328 30 100.0 35 .............................. GAGGGTGTCACCCCAAGGGTCTGGCCGTGCAGATA 5263 30 100.0 36 .............................. AATCTGCGTTTTTAACATTGCATTGCAGAGTGACTG 5197 30 100.0 35 .............................. ATGGTTTACGTTGGCTTTTGAATTGAATCTATAGC 5132 30 100.0 35 .............................. GGGGTCTTGCTGACATTCCTGAGTTTCGATTCAGG 5067 30 100.0 36 .............................. TTGGCCTGTTGAGCGGGCTCGCACTCATACTCTCGA 5001 30 100.0 34 .............................. CGCGATGTGTCGACTCTCAGGGCCAACACCGATC 4937 30 100.0 32 .............................. GCGCTCGCCTCGGAACTTGAAGACCAACGCGG 4875 30 100.0 35 .............................. CGCTACGAAAGCCCGCCCGACACCAGCTCACTCAA 4810 30 100.0 36 .............................. GTACTGCGTGTATGTCCTATCTCGTTCATGCTTCAC 4744 30 100.0 35 .............................. TGCGGGTGGGAATGTGAAGTCAGGAATTGTTGTCG 4679 30 100.0 35 .............................. CAACATCGGTATCTATCTGTTCCGTGACGTTGAGA 4614 30 100.0 34 .............................. CTCTTTGACGCCTACCAAGAGTTGAACGGCGAGA 4550 30 100.0 35 .............................. ACGCCGCCGCGCCGACGCTGTTGGTTCGACGGTGA 4485 30 100.0 35 .............................. CCCAGAAAGGGAGACAACCTATATTGAGAAAACCA 4420 30 100.0 36 .............................. TGAGGGCGTGCAATGGCTGCAAGCGATAGAAAACCA 4354 30 100.0 36 .............................. GGTGCGTGGTTGTTGATCGTCGGCATGAACAGTGGC 4288 30 96.7 34 ......................A....... TTGCGGGACGTGGTTGGCGACCATCGCGTCGCCC 4224 30 100.0 34 .............................. CCACTGTTCAGCCACGCCGTCAGGGATGTTGATG 4160 30 100.0 36 .............................. ATTAGACCATATCGCTTAGATTGTAGGCCCCATCGG 4094 30 100.0 36 .............................. ACCGACTATTGATTCAATCAACGCAGGCGAATCAGT 4028 30 100.0 34 .............................. GCGTGTGTGTAGTACGGGCGTATAGGCTATGTGT 3964 30 100.0 36 .............................. CAACTGCCGCGAAACCACTTGTGGCGGTTGCTTGGG 3898 30 100.0 42 .............................. CCTCATTCGTATCGTATGACTCAACTGCCTCTGGTTGGCCGA 3826 30 100.0 35 .............................. AACAACATTATTTACGATACACACCACGACATTGT 3761 30 100.0 35 .............................. ACAGACAACGCAACAGCAACCCTTGTCGCTGATAC 3696 30 100.0 36 .............................. CTCGGCTTGATCGGGCTCAAGCCCAGCGATGATCTG 3630 30 100.0 36 .............................. CAACACAAAAATCACGAATAGAAGTTATGAAAGATC 3564 30 100.0 36 .............................. TCACCGAATGGGCCATCATCAAAGTCGGCGTTCTTA 3498 30 100.0 34 .............................. GACGACAATCTTTTTGATATCACACTCCGCAGCG 3434 30 100.0 36 .............................. GCAACTACTCATCGTCGCCACCCCGGAACACGCGGA 3368 30 100.0 36 .............................. TGTCGAAACAACCGACATGAGAGGCCGTACAGAGCG 3302 30 100.0 34 .............................. AATGTGAGCTACTGAACAGCCATATCCCCAATGA 3238 30 100.0 37 .............................. CCGCTGCTTGGCATGGAAGGATACCGCGCTTCCAATG 3171 30 100.0 35 .............................. AACCGTTTGGCGAGTGGGCAAGACATCGATCATGT 3106 30 100.0 35 .............................. GGAATGAGATCGCCGACTCAACGGAGGGTATCGGG 3041 30 100.0 35 .............................. GATTACCGTCACGAATCCCACTGACGAAGATGTAT 2976 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ========================================== ================== 58 30 99.9 35 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : TGGAACAGACGGTTGAACATCCGAAGTTGAACCGCAAGGTCAGCTATCAGTACCTAATGCGGCTCGAAGCGTACAAGCTCAAGAAACACCTGCTCACTGGCGAGCAGTACGATCCGTTCCAGCGGTGGTGGTGAGATGTACGTGGTAATGGTCTACGATTTGGAAGCTGAACGCACGCAGAGAGCACTCAAGATTGGGCGACGGTATCTGACTCACGTCCAGAACTCGGTTCTTGAAGGCGAGATATCGGAAGGCGACCTCACCCAGTTGAAAAACGAGATTGATGATCTGTTGAAGCCCGGGGAGTCGACGATCATCTACGAGCTATCTTCGGATACTCTCCTCAATCGGACGGTCTACGGCGATGATCCGACTGAGGATCAGCGGTTCCTGTAGTCGTTTCCGTCAACCCCCCGGGGGTACGCGGGTTATTGACGGTTGACGGAAGGACTTTATTGGAACCGGCCGTTAGGACGCCTATGTCCCGTATTTCGGGCATG # Right flank : ATCCGTGTGGCCTCATCCACCCGAGCGACAAGTCGTGTTACGGACGAACCATCTGGTCGTGATTATCGCGCTAATCAGGTTGAACCAACCGACACGGCCCCATTGGCCAGCAACCAGTTGCACCCTCCACTATATCAAATAGAATCTACCTCGGCAATTGCTTCGGTCGCGAGATCTCCCAATTCATCAGCCTCGATGTGCGAATACCGCTTGCGAACCATCTTCTCCGAGTTATCGAGATACCGGGCGGCAACCGTGTATCCGAAGCTCCTGACGAGAATTTCTCCCATTCCACGCCGCCCCCCGTGTGGGGCCAGATAATCGTGTTTCGGATGTTCGATTTCAATTTCCGCTGCGTTCGAGAGTCGCCGGAGTATCGACCGGGCTCCATCCGTTGTGATCGACGACGGGCAAATATCCTTGTCGAGGGCCAGTAAGAAATCACGGGCATACTCTTCACGCTGCTGATCGTGTGTCTTTGGCTTGTCCAATTGACCCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3067-2739 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMDW01000039.1 Halonotius pteroides strain CECT 7525 NODE_39_length_15141_cov_392.59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3066 37 100.0 36 ..................................... ATTTGCCAGTAAAACAGGTCGCCCTCGCACTGGTAC 2993 37 100.0 35 ..................................... ACGGGGCGTTTCCGACGATTCTCGAAAGCAGCGAA 2921 37 100.0 35 ..................................... TCGATGAATCGATCACTGGCGTTCGCCTGAGCGTT 2849 37 100.0 38 ..................................... TCGAGCAACGGTTGACCGGCGGTGGCGAGCGGGCCGCC 2774 36 86.5 0 .....................A.....T-...A...G | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 97.3 36 GTTGCAGCGGACAGGAAACCCGAACCGGGATTGAAAC # Left flank : ATGTCTGCCACCGGAGCGGGGTCGTTTCACCTCGTCGTAATCGTTGATTCTACGATTGCGGAGCGTGCCCACCAGCGAAGCCGCACGAAGGATGGAGCCCTGTATAAAGGCCATTTATCGGCGGTGGAGGTGAGAAGAGCGGAACAGAAATCCGCCGTTGCATGGCCTGTAGCGCACCAATAGGGTTGGCTCTCCCAAGGATATGGGAATCTGAGCCGGAAATCACGAACCTCACGAGATGTGGATGAGTCAGAACCCCACATCAAATCGTGCAGTGCGAGGGAGCGACCGCCTGATACACAAGAGCGCGTATCCCACCACATACTGAGGGGGACATTCCATTCCCCGAGAGAGTGGAAACAGAAATCGCATTCATACTGAAGCCGCAGATCTACGTCAACCGGTATAAATGAAGTGTATAGCATGGGTTGACGTATTCCGGTAGCAATTTTAGGACAATATATTGTAATAGCAGTCCTCTAAGCGGATTCTACCCCCCT # Right flank : ACTGAATTAATCGCCGCCAGCGGCGTCTTTACCCCGTCTAAAGCTCCCTGACAAGATACCTTGTCGAGTAGACCATTATCATCACCAGTGTATCTACCGAGATCGTCAACATCGCCAGTGGGTCATTCAATGGCGGTGGCGGTCGCGGTTGCGGCAAGGCCCGAACGGTCTGTGAGGGCCGCACTTGTCTGCCCCCTTAGGGGCTATCCCCCTAAAGGAGGGTGGCAAGATACCTTGTCGAGTAGACTATTGACAGCAGAGTGCTGCAATTTGCCGATTCCCATCTGCGGATCTAGGCTGATGCTGTCAGTTGCGGTGCTGTTGGGGGTGTGGTGTCTAGCAAATATAGAGCAAGTGACAGTATCAGCCTAGATCAGTCGTATCATCTGGAATCTATGTGATCTAAGATAGTGCCGCCGCTGGTGAGACTTGCTATCGCCTACCGCCGGTGGGCTAACCCCCAGCCCACTCGTAGAGGTCTGTCCTCATCTTGATGTGGC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCGGACAGGAAACCCGAACCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 2 10610-10282 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMDW01000039.1 Halonotius pteroides strain CECT 7525 NODE_39_length_15141_cov_392.59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 10609 37 100.0 36 ..................................... ATTTGCCAGTAAAACAGGTCGCCCTCGCACTGGTAC 10536 37 100.0 35 ..................................... ACGGGGCGTTTCCGACGATTCTCGAAAGCAGCGAA 10464 37 100.0 35 ..................................... TCGATGAATCGATCACTGGCGTTCGCCTGAGCGTT 10392 37 100.0 38 ..................................... TCGAGCAACGGTTGACCGGCGGTGGCGAGCGGGCCGCC 10317 36 86.5 0 .....................A.....T-...A...G | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 97.3 36 GTTGCAGCGGACAGGAAACCCGAACCGGGATTGAAAC # Left flank : ATGTCTGCCACCGGAGCGGGGTCGTTTCACCTCGTCGTAATCGTTGATTCTACGATTGCGGAGCGTGCCCACCAGCGAAGCCGCACGAAGGATGGAGCCCTGTATAAAGGCCATTTATCGGCGGTGGAGGTGAGAAGAGCGGAACAGAAATCCGCCGTTGCATGGCCTGTAGCGCACCAATAGGGTTGGCTCTCCCAAGGATATGGGAATCTGAGCCGGAAATCACGAACCTCACGAGATGTGGATGAGTCAGAACCCCACATCAAATCGTGCAGTGCGAGGGAGCGACCGCCTGATACACAAGAGCGCGTATCCCACCACATACTGAGGGGGACATTCCATTCCCCGAGAGAGTGGAAACAGAAATCGCATTCATACTGAAGCCGCAGATCTACGTCAACCGGTATAAATGAAGTGTATAGCATGGGTTGACGTATTCCGGTAGCAATTTTAGGACAATATATTGTAATAGCAGTCCTCTAAGCGGATTCTACCCCCCT # Right flank : ACTGAATTAATCGCCGCCAGCGGCGTCTTTACCCCGTCTAAAGCTCCCTGACAAGATACCTTGTCGAGTAGACCATTATCATCACCAGTGTATCTACCGAGATCGTCAACATCGCCAGTGGGTCATTCAATGGCGGTGGCGGTCGCGGTTGCGGCAAGGCCCGAACGGTCTGTGAGGGCCGCACTTGTCTGCCCCCTTAGGGGCTATCCCCCTAAAGGAGGGTGGCAAGATACCTTGTCGAGTAGACTATTGACAGCAGAGTGCTGCAATTTGCCGATTCCCATCTGCGGATCTAGGCTGATGCTGTCAGTTGCGGTGCTGTTGGGGGTGTGGTGTCTAGCAAATATAGAGCAAGTGACAGTATCAGCCTAGATCAGTCGTATCATCTGGAATCTATGTGATCTAAGATAGTGCCGCCGCTGGTGAGACTTGCTATCGCCTACCGCCGGTGGGCTAACCCCCAGCCCACTCGTAGAGGTCTGTCCTCATCTTGATGTGGC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCGGACAGGAAACCCGAACCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 1 9208-9474 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMDW01000005.1 Halonotius pteroides strain CECT 7525 NODE_5_length_152400_cov_127.424, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================== ================== 9208 30 96.7 48 ............A................. GGTGACATCACCGACGTTGTCCCCGACGAGGCCGCCGACGTAGCTGCT 9286 30 100.0 51 .............................. CCCGACCGTGGCGGCGTTTTGCCCGACAAGGCCGCCCACGAAGTAGTTGTC 9367 30 93.3 48 .............G.............G.. GTTGATCGTGCCAGAGTTGTACCCGACGAGGCCGCCCACGGCGCTGTC 9445 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================================== ================== 4 30 97.5 49 TCCGGAGACGTTGCCGGTCGCGTACGACTC # Left flank : GTGCTGGTGCTGGGACTGGTTTCCCACGACAGCGTCAGTTGCTGGGAGTCGCCGCTGGCGAGGGTGACGGCGCTGCTGTCCTGCTGGCTATCTGTGAAGTCGGTGTCGGTCAGGGTGATCGACTGCTGGCTGCCGTCTGTCGCCCAATTCGTGACGGTCGCGGTCACGTCGAGGGTATCGGCTACACCGACCGGCGAGGTGGTCGAGTCGATAGTCAAGCCGTAGAAGGGGTCGGTGTCCTGCCACGCGAGCGCGGGGTAGGCGTTGGTGGCGTGCCACGTTCCAGCGCCGTCGGGGAACGCGAAGGCACTCATGTTCGTGGGGGCGTCCCCGCCGGTCATCTCCGGGGCTGGGGTGGTGTCGCTAGTCGAGCCAAAGCCGATGAGACCGCTCCCGCTTCCTTCGCCGATGGCATCGGACTGGTTCGTCGTTCCCTTGTCCCAGTAGCTGTCGGTGACTGTGCCGCTGTTGCTCCCGACGAGGCCGCCCACGTAGCCGGT # Right flank : CGGTGACCGTGCCAAAGTTGCGACCGACGAGGCCGCCCACCACGGTGTTGCCGGTGATGTCGGCGTTCTCGACGCCAACGTTCTCGATAGTGCCACCGTCCACCTCCCCGAACAGTCCGATATTATCAGTCCCACCCCGGTCGATGGAGAGGTCCGAAATCGTGTGGTCCGCGCCGTCGAAGGTGCCCGTGAACTGCGAGCCCGAGTCACCGATAGGGTCGAAGCCGTTGCCGCCGTTCCACTTGCTGGTCCCGCTGGCGTTGATGTCACTCGTGAGTTCGTAGTCCTTGCCCAGCCCTTTGTTCTCGATACACTGCAGTCTGTCGACGCTATCCACGTCGAGTTTTCCGTCGTTGTCACCATCAGCGTAGCTCACTCCGCTACAGTCCGGTGCGGTGTTGCCCGCCGCGGCCGTAGCGGTCCCGACGAACCCGGTACTAGTCGCCAGCACCGCCAGCCCCACGATGGCGACGAGATACACCGCCAGCAGTCTACGTGAC # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.14, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCGGAGACGTTGCCGGTCGCGTACGACTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //