Array 1 95742-94924 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWMM01000014.1 Haemophilus influenzae strain 60294_BAL_Hi1 60294_BAL_Hi1_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 95741 37 100.0 33 ..................................... AAATTTTGCAAAGAACAATAGCCACTATCAATA 95671 37 100.0 33 ..................................... CACTACGCCCACAAATTTAACGAAAGGGATTGT 95601 37 100.0 34 ..................................... TTCTTGCGTGGCATAAATAAAGCCTTTCTGTGCT 95530 37 100.0 34 ..................................... TTTTCTGCATAACCAAACTATCGCTATTGCTTGC 95459 37 100.0 33 ..................................... CCAATAAATGATTTATGGCGTAAGAAAATAGCA 95389 37 100.0 33 ..................................... AAAGAGGACTTCAATCCTTCTAGAGAGTTAAAT 95319 37 97.3 35 ..................A.................. TGTTTTAATGGACTATCTTGAACATCTGACATATC 95247 37 100.0 35 ..................................... ATTTATATCAGCTTTTGCATTGTTGATTTCTCGCA 95175 37 100.0 36 ..................................... TTACCAACTAAGTGACGATATAACTCGGGGTAATTT 95102 37 100.0 33 ..................................... TGTTGCCTAATACTTTAGCAGTTCTAGAACGTA 95032 37 100.0 35 ..................................... ACGGCAAAATAAGCCGTCATCCCCACATCACTACG 94960 37 97.3 0 ..................................A.. | ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 99.5 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TAAATTCTAGGAAGAAAAAAATGGCACAATATTTAATTGGTTACGATATTTCCGATCCTAAACGACTACAACGGATTTATCGTCGAATGACAAATTATGCGACCCCCATTCAATATAGTGTATTTATTTTGGATGGCACAGAAAAACTACTTAAGCAATGTTTAGCAGAGATTATGTTAATTTTCCACAAAAAGGAAGATGATTTGCGCGTCTATCCCTTACCAGCCAATGCGGCTCAATGGCGACTAGGTAAATCAAGTTTACCTGATGGGATTTACTGGACGGCCTTGCCTACAGCCTTAACCTTATAAAATGCTACTGGAGTATTTCACAAACTTTGCTAAAATATACCGCACTTTTGGCTGAGTTTTGAAAAAAATAAGAATGATAAAAATTGTTCAATATTTAATCAAATCAATACCCAACTATTCAAACATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGACTCTAACACTCCACTGCA # Right flank : TCATGGTCTTCAGGAATGTCTTTGTTCACGATAGGTCGAAAGACATCGCCTGCCTAAAAGGGATGTACATCGCTAAAGTGCGGTTAGTTTTCAATATAAATTGGAAATCGACCGCACTTTTTATTTCCTTTCATTTTTACAAATTTGTATTTTCGCCTTTCTATTTATGACTTTTCTATAATTCACTCCGTTAGTAATTGATTTTTAGCTCAGAGGATTGAGCGCTAATTTAGTTTGTTAAAAATCTATAAAGAGAAAATAGAGAATTAAGCAATTATTGGCATATAAAACAATTGTTCTAATTTAAAAATGTGAGGGAATTAAAATGGCTGGAATTAATAAAGTAATTATTATTGGTAATTTAGGGAATGCACCAGAAATTCGAGCGATGCAAAATAGTGATACGGTTGCTAATTTTAGTGTGGCGACATCTGAAAGCTGGGTGGATAAAAATACACAGGAAAAACGTGAAAATACCGAATGGCATCGTATTGTGCTTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 190-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWMM01000006.1 Haemophilus influenzae strain 60294_BAL_Hi1 60294_BAL_Hi1_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 189 37 100.0 34 ..................................... TAACCGTTGCTGAGAATGCTGAGGACAGAGTGTC 118 37 100.0 33 ..................................... TAATTTTACCCAACATTTTAAAGCCCCTTTTGT 48 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 100.0 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TAATTAATGTAGATGATAGGAGAAAAATTATGTGGTTACCTGTAGCAGAATTAATCGTCGCAGCTGTTGTAACAGAGGTAGTTGACCGCCTCATGGAAGATTAGCGCCTCTCAGCTTGGCAAGTGCTGTGAACTTGCTACATCAATATTAGCTAGCCAACAAAACGGGAAGAAGAATATGTTTGAACGCTTACTTGTTGTCGCGATTGCTACAGCCATCGCAAGAGCAGTAGAAAACGCATCCAAAGATTAAACTTTGGCGGCATGCGGTGCCGAAAACCGCTATTGTGTCATAATGTATTAACATTATAGAAATACTACTGGTGTATTAAAAAAACTCTGTTAAAATACGCCGCACTTTTGACTGAATTTTGAAAAAATAAGAATGATAAAGGTTGTTCAATATTTAACCAAATCAATACCTAACTCTTCAGATATCAGAAAAAGTTGGAAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCCACTGCA # Right flank : CCTACCCCTTAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 1361-2462 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWMM01000016.1 Haemophilus influenzae strain 60294_BAL_Hi1 60294_BAL_Hi1_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1361 37 100.0 34 ..................................... TAACCGTTGCTGAGAATGCTGAGGACAGAGTGTC 1432 37 100.0 33 ..................................... TAATTTTACCCAACATTTTAAAGCCCCTTTTGT 1502 37 100.0 34 ..................................... CTACCCCTTACTTAAAACTTGGTTAATTCTTTTT 1573 37 100.0 35 ..................................... TTCCATTGATTTAGCTTGTTGGATTGTATCAGTTG 1645 37 100.0 34 ..................................... TGTAGTGTTGGCTCAACTGAATCCAATACAGTAG 1716 37 100.0 36 ..................................... AATTCCGTAAAGTTCACAAAGGCCGCAACCGTGGTA 1789 37 100.0 36 ..................................... TATTAAAAATGACGCAAATTCTATCTTCAAGAATTA 1862 37 100.0 33 ..................................... CATCTTCTTCTTCTAACTTTTTAAGAATACTTT 1932 37 100.0 32 ..................................... GTCAAAAGCTCTTCTATTAATTCTGCTTTTAA 2001 37 100.0 34 ..................................... AGTCATTTCCTGAAATACGCATATACTCTTTTCC 2072 37 100.0 35 ..................................... TTTGGAACCTTGCTATCCTTTCGAACTACTGCTAT 2144 37 100.0 36 ..................................... GAAAATGCTGAACTAACAGCATCTCCAAATTTAACG 2217 37 100.0 33 ..................................... TTCCAAAGCTGATCTATATCTCGTAAGATTTTA 2287 37 100.0 32 ..................................... CATGATAATCTCCTATATAAGAAGTACAATAC 2356 37 100.0 33 ..................................... CGCCAAATTTAACGTTAGAACGTGCCATGATAA 2426 37 91.9 0 ................................A.A.T | ========== ====== ====== ====== ===================================== ==================================== ================== 16 37 99.5 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TAATTAATGTAGATGATAGGAGAAAAATTATGTGGTTACCTGTAGCAGAATTAATCGTCGCAGCTGTTGTAACAGAGGTAGTTGACCGCCTCATGGAAGATTAGCGCCTCTCAGCTTGGCAAGTGCTGTGAACTTGCTACATCAATATTAGCTAGCCAACAAAACGGGAAGAAGAATATGTTTGAACGCTTACTTGTTGTCGCGATTGCTACAGCCATCGCAAGAGCAGTAGAAAACGCATCCAAAGATTAAACTTTGGCGGCATGCGGTGCCGAAAACCGCTATTGTGTCATAATGTATTAACATTATAGAAATACTACTGGTGTATTAAAAAAACTCTGTTAAAATACGCCGCACTTTTGACTGAATTTTGAAAAAATAAGAATGATAAAGGTTGTTCAATATTTAACCAAATCAATACCTAACTCTTCAGATATCAGAAAAAGTTGGAAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCCACTGCA # Right flank : TTAAGTTTTTACTTCTATCTTAAAATTATTGCTGGCTTTGGCATTCCCCAAAATCTCCGCTAAAATAACCGCACTTTTTCTTATCTTCTAGGAAAGCAATATGTCAGATATTCTGAATAACCTTATTCATCTTCTTATTAAACTTGAAAAAATTGATGATTTAATCTTTCGTGGTGAAAGCCAAGATTTAGGTTTTCGTCAAGTATTTGGTGGGCAAGTTGTAGCTCAAGCATTATCAGCGGCAATGCAGGTGGTGCCAGAAGATCGCATTTTACATTCTTGTCATGCCTATTTTCTTGCTCCAGGAGACAGCCAATATCCGATTATTTACGATGTAGAAACCTTGCGTGAAGGGCGTAACTTTTCTGCATTACGCGTAAAAGCCATTCAACATAAAAATACCATTTGTCATGTAACAGCCTCTTTCCAAGTGCCAGAAAAAGGTTTTGAACATCAAAATGCAATGCCAAATGTTGGCGCGCCTGAAGACTTTACAGATG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //