Array 1 3628-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAA01000084.1 Fischerella thermalis WC538 NODE_124_length_37752_cov_30.991205, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 3627 37 100.0 40 ..................................... GCGACCCACACATCCCTTATCCACTTGATTATCGCCACGA 3550 37 100.0 33 ..................................... CAATCGGCAGACTCTATCTTTGAAAATGTCCTT 3480 37 100.0 35 ..................................... GTAGTATTTGTGCCACTGGACGACCGTCTCCAGGA 3408 37 100.0 34 ..................................... AGATAGTTGCGGATGTGGCTCCTACCTGATGCCG 3337 37 100.0 34 ..................................... GCTGGTGACCACAAGGTATTGCCAGGCGTATTCG 3266 37 100.0 37 ..................................... GCAGCAATAGGGCTTGGGCACGGTCAGAGACTCGTCG 3192 37 100.0 36 ..................................... GGGACGCAGTATGGCGGCAGATTCAGCGATCCAGCG 3119 37 100.0 38 ..................................... CAATCGACAGAAGCTCCAACTCATCCGGGCTGTCTTTG 3044 37 100.0 37 ..................................... TTCTCCCCATCCCAGCTAGCGATCGCGCTGCAAGATC 2970 37 100.0 37 ..................................... TTCCCTTGATGGGGAGGGGATTCAGGGATTCAGCCGT 2896 37 100.0 34 ..................................... CACCATTTCTATCGAAAACGGCAACACGATTACA 2825 37 100.0 34 ..................................... GACCTCCCTCCGACGATCGCTCCTAGTGCCCAGC 2754 37 100.0 36 ..................................... CTTCGGCTCGATTACTCTTGGATCGTATCTGCGCTG 2681 37 100.0 35 ..................................... CGGGACGAGCGGCAAAGCCACGCTGGCTGCCTTGG 2609 37 100.0 36 ..................................... TGAAGAGATCATCCGGCTCAAGGGGGCGGATTATCC 2536 37 100.0 35 ..................................... GACTTAAAGTGACCAGACAGCTAGGATGGGGAATG 2464 37 100.0 33 ..................................... CCTCCGAGGGAGGACAAAAACCTTTTCTCTCGC 2394 37 100.0 42 ..................................... GAAGATATCCTGAAAGGTTGCAGCGACAACCTTATTATTTAC 2315 37 100.0 34 ..................................... CTTCCCTGATCCCGTCTTCGTGACGATGATGTCG 2244 37 100.0 34 ..................................... AGTACGCGATCGCGCCATACCCATACAAAAGGAG 2173 37 100.0 33 ..................................... TTCGCCCAGAACTTCGGGTAAAGTGCTGAGAAA 2103 37 100.0 35 ..................................... AATCAGTGATCGCAAATTCAGTTCGAGTAGAATCA 2031 37 100.0 34 ..................................... GCGGAGGAGGGAAGAATGCCTAAATACGATGTAG 1960 37 100.0 34 ..................................... CTCCCCACCCGGAATGCCGAGCTAAAACTCTGGG 1889 37 100.0 34 ..................................... TTAACAAAGCATCATCGATATCCAAAACAATGGA 1818 37 100.0 33 ..................................... TGCCAATATCTGCTGCCCATCGTATCCAGCCCA 1748 37 100.0 34 ..................................... AGTTCCCAGCGGCGCAAATCATTTTTGATAAGCT 1677 37 100.0 44 ..................................... CGGTGCGCATCCGGTGGATGAGCAATCGGAGAGCGAGATCGGAG 1596 37 100.0 36 ..................................... GGGGCGGATCAAGCGATCGCCGACCATATACCCCTT 1523 37 100.0 38 ..................................... CACGGCTTGATCCACGCCGTAGATCTGAGCCTGATCGA 1448 37 100.0 39 ..................................... GCTAGCTCCTGGCAGAGGCGAGGGAAGCTCTGCCTCCCC 1372 37 100.0 36 ..................................... ATGAGAAGGTAGCGAATACTCGCGGCGCGGCAGTAG 1299 37 100.0 32 ..................................... GGCTCTCTCCTACGAGCGAGGGCTTCGAGGTG 1230 37 100.0 35 ..................................... AAGCTGCTCTCTTCACCGTCAACGACGTGCATAGT 1158 37 100.0 34 ..................................... TTTGGATCAAATTCAAAATTGGGAGCCATCGCAT 1087 37 100.0 35 ..................................... CCTCGGCGACAATCCCTAGCTCTCCGAGCAGGGCA 1015 37 100.0 35 ..................................... GGCTAGCCTGGAGAAGCAGCTCAAGGAGGCACAGG 943 37 100.0 36 ..................................... CGGACTCTTCTCTCACTCTGCCGCGATCGCCATCGA 870 37 100.0 39 ..................................... ATGAAGTGAATATTTTCGTTAGTCTGCACAGTCCAGGTT 794 37 100.0 34 ..................................... TGGACAGACTAGCCCTCGGTAGGAAGCCCTTAGG 723 37 100.0 32 ..................................... GGAGTGCGATCGCGCCAAAAAGAAAGCCCGGA 654 37 100.0 34 ..................................... CCACGCCCCCGCCCAATGACCCCTCCCGTGGAGA 583 37 100.0 32 ..................................... CTGTCGGTGGTGCATTTGCCGACGAGAAAGAC 514 37 100.0 35 ..................................... AACATCAATGGCGTTGCGATCGCGAAGGGTGAATA 442 37 100.0 40 ..................................... TTAAAAAAATAGTTGCCAAGCCGCCAAAAACGATCAAGGA 365 37 100.0 35 ..................................... AATTCCTCTAAAAGACCTCCGATCTCAGAATCCGA 293 37 100.0 36 ..................................... GCCAGGGAATTGAAGCGCGGACACATCAACGCTTAT 220 37 100.0 35 ..................................... GTAATGCATCTTTTGTGTTTCCATTTTTCGACATT 148 37 100.0 46 ..................................... CCCTCGCCGACCACCGCCAGATGGGCTGGCGGTACCGCGGACAGGA 65 36 86.5 0 ...........................A.C.-..TT. | ========== ====== ====== ====== ===================================== ============================================== ================== 50 37 99.7 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCCGAAGATAAACGTCGTACCAAAATCCACAATATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGCAACCTAACTGAAACTCAGTATGCTAAATTGAGGTCGCGGCTAGCAAAACTCATTAAACCTGATGAAGACAGCATCCGCTTCTATTTTCTTTGTGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTGGCGAAATGCCAATGGATACTACGGTGTTTTTTGCTTGATGATGGTGCAAACCAGTAGGTGTAGAAAAAAAGCAATCAATTTTTGGGGCTGAAATGCTGATTCTGTCTAAGTTAGAGACTGATTTGATGGCAAATGAGGTCTGCACCTTTTCTGTAAATCTTACCCTGACTAGATTTGAGCCATTTTATACTCGTTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTAATCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCC # Right flank : CGTAAAGTAAATATTAAATAGCCAATCGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 23493-23673 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAA01000065.1 Fischerella thermalis WC538 NODE_88_length_67892_cov_31.131414, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 23493 36 100.0 37 .................................... AAACCATCAACGACGGCAACACACCAAACGAAACCAC 23566 36 100.0 36 .................................... TCTGCGTGGGCCATGCTTTTGATTGGCTCCGCCTGT 23638 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 100.0 37 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : TGTAATATCTAATTCTCGGCTATATCTAAACAATAGTTCTGGCGAACAGTTACTAAAGAACAGCTAGGATTAGCATCACCCTGCTCTGGAATTCTACTCATTCCCTGTAAGCTTTGCGGCTTTGCAATAAAGAAGCCTACAAAATAATTTTGTACTGTCATTAGTTAATTTAAAATGCGGATGAAAGGACTTGAACCTTCACGCCTCGCGGCACTAGAACCTAAATCTAGCGCGTCTGCCAATTCCGCCACATCCGCATCAGTTCCTTATCATAGCATAAAAGTTGTCTAGAGCAATAATTTTTACGAATTAAGAGCAACTACCGAAGTTCAGCCCAAATTCTGCAAATGCCTATTTTTGTGTTGTGAACTTCGGTTGTTTAGTACATAAGGGTTTTAGGCTTTTTGTTTGGAGGAATTGAGATGTTTTTGTCTGTAAATTATCTGAACTTCGGAAATCGGCTCTGGAAATCTTACTGGGTAACGGTTTAAAATAGGACT # Right flank : CTGAATGGAAACAATGGGAACCTAAATTACACCGACACGAGGTAATCGATGCTTGAATCCGCAGAGAATTTCCCAAGAAATTGTGTTTAGTTGATTTGCCCAATCATCAGCGGAGATTTGTTGTTTGCCATCTTGACCTAGTAGGGTGACTACCTCACCTTCTTGTATATCTGGTAAGGCACTGATATCTACCATCAGTTGATCCATTGTAATTGCGCCGATCTGTTGTACTCTTTGACCACGAATTAATACCTGCATTTTGTTGGAAAGATTGCGTGGAACACCATCGGCATAACCAATGCCAACAACAGCAATTCGCATTTCTTGCTTGGCAATAAATTGATGACTGTAACTCACACCAGTCCCAGCAGCAATGGTTTTGACTTGGGTGACTCTGGCCCTGACTTGCAAAACAGGTTTCAGGTTAATTTGCGATCGCAAATGTGTGGCTGGGTAAAGTCCGTAAATGAGTAAACCTGCACGCACCATATCATAGTGTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 34956-38027 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAA01000020.1 Fischerella thermalis WC538 NODE_24_length_55142_cov_30.341900, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 34956 36 100.0 40 .................................... CCGGCTATCTGCTGCTCTTGCTCTAGCACGATGGCTCGGA 35032 36 100.0 34 .................................... CTCGGCAATCTTTTCATCCGATTGCGCCACCAGC 35102 36 100.0 42 .................................... CGCCAAGACCTTGCTGCCGGACATTTACCGGTGTGTCGAGAT 35180 36 100.0 36 .................................... CTTCTCTTGGGAGAGGATACTGCACAGAACTTCCTA 35252 36 100.0 39 .................................... CATGTTATCCCTGTAGTACATTTGTGGTCTCCTAATTAA 35327 36 100.0 38 .................................... CCGCCTATATCATCAAGTCCCGGCAACTCGGCGTGACC 35401 36 100.0 37 .................................... CACTATCCACGCCGACATTAGATCGAAGAATCGGTTT 35474 36 100.0 35 .................................... CGGCGATCTTAATCAGGGATTTGACCAAACCACAC 35545 36 100.0 35 .................................... CTTAAGGGTGCTTGCCCTTTTCTTTATATTTTTAG 35616 36 100.0 34 .................................... CTTTCACAGTTGCTTGATTATGGCTTACAAAGAC 35686 36 100.0 39 .................................... CTTGGAGTTTCTGTGGAGTGTCTTGCGGCGTACTTACTC 35761 36 100.0 34 .................................... CGAAAAGCCGGATGGATTGCCTCCGCTCCAGGAC 35831 36 100.0 38 .................................... CCTTAGCCCCAATTCAGAGATGATCTGCCGTCCAGTGA 35905 36 100.0 35 .................................... CGCTTGCCCCCATCCTTGCACCCAGATACTGGGTG 35976 36 100.0 36 .................................... CACTATTAATGAGATGTACGAAAACAACGTGACTCA 36048 36 100.0 35 .................................... CTTAGAAATCAATCCCCGTACCACTGCACTGTTTT 36119 36 100.0 34 .................................... CGTAAAATAATCCACCAAATAGAGATCCGAAGAG 36189 36 100.0 37 .................................... CCACTGAATGATGTATTAGACAATCTGGCAAACACCA 36262 36 100.0 37 .................................... CCTAGCTCATCATCGATAGCTACAAGTTTGTCTATGA 36335 36 100.0 35 .................................... CTGGAAATACCAACTAGGGCAATGTGCTTGTTGTA 36406 36 100.0 37 .................................... CTCCTCTTGGGCTTGTTCCCAAGTTATCTTACCTTCC 36479 36 100.0 38 .................................... CAACACTTTTACTCCAGGCACTACACTTAGTATCACGA 36553 36 100.0 37 .................................... CAACCTGGTTTCCTTTAGGTTTGAAGACCGGGCGTTG 36626 36 100.0 34 .................................... TTTCGATCCTTTGATTGTCGAGCTACTTGATCTC 36696 36 100.0 37 .................................... TAGTCGCCAATGCGCACAGGATAGCCTTGGACTGGCA 36769 36 100.0 36 .................................... TTTGGCGGTCGCCTTAGCCACCCTGAGCAATGACAA 36841 36 100.0 36 .................................... TGTTGTGATCTTGGGTCTGGAGGTTGCGGGAGCGGG 36913 36 100.0 33 .................................... TGGGGCTGGTTTCTGTGATCTACTGGCGCACGA 36982 36 100.0 44 .................................... TAGGTACTTAGCGACTCCGCTCTTGCCCACCCAGGGATGGGAGG 37062 36 100.0 35 .................................... TCCAATTGTCCCAACGAGCCAGTCGTTGACAAAGT 37133 36 100.0 37 .................................... TTGGCTACCCATATGCGCCGTAGCCATGAGCCATAGA 37206 36 100.0 37 .................................... TGAGGCTCTTGGAGTTTCTAGAGGTGTCGCCAAAGCC 37279 36 100.0 36 .................................... TTAAACCTGAGAAGCATCCTAGGGGCGCAAATGGAC 37351 36 100.0 34 .................................... TGGTGACATATCGTCCTATCGAGGGGATCTCGAC 37421 36 100.0 35 .................................... TAGACACAAGGTCTTTACCAAGCACCTTAGACCAG 37492 36 100.0 35 .................................... TGGCACCAGCCAAGTCGTAGCTGAGCAACTCAAAG 37563 36 100.0 36 .................................... TGGGACAAATCGTGAGACAGATTTACAGAAGTGTTT 37635 36 100.0 34 .................................... TCCTTCTTTATTAATGCCGTGAAGGGATTATCCG 37705 36 100.0 35 .................................... CATGTGGTGTTACATGTGCCATCAGGTGAGATGAC 37776 36 100.0 33 .................................... CGGCGCTATACCTGTGGACTTTCTCGGCGATCG 37845 36 100.0 34 .................................... CCTAGAAATTCAGCAGCATGTTGAGGTCGCCAAA 37915 36 100.0 41 .................................... CGCTTGGCGCAAGTGCTTTGACAGGTGCTTTAATCGGTGGA 37992 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 43 36 100.0 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAA # Left flank : AGGTGGTGTGGAAGCAACGCCAAAAGTCTGGGATCTAGCCGCTGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTGCTTTATCTGCTGGTGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTAGAAAATTTAAAGATTTGAACTTTGGCGTTCTCCAAGTTGCTTGGTTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTAACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAATAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTAAGTTTGTAGC # Right flank : AGTGGTGAGATTTACGTATAGCACTTTAAAATTAGGAGACTAAAAAAACCAAACTTATACGCAAAACCTTACTTAAATCTATAATTTAAAAATAAAATCAGCGATCGCCACCTCATCTTTACCTGTTATAGCTTCTTGGGGAGGACTCAGTAAAACAGATCGCTGCATTAATTTCTGACTTTCAAGACGACGTTCAACCCGGCTAGGAATTCCGTAACCGTAAACAATATGTCCTTGTCCAGCCAATACTGCGACTTGATAATCTGGATTAGCTTTGACAAACTTTGCAATTCCTTCTGCCATTGTTTCATCCCATAACACTTGCGCCAAAAAAAAGCGTTCAGCACCAGAACTATTACCGTGTCCAGCATTTTGATGCTGTTGAAAAGCTTGTAGTGATAACTGTTGATACTTTTGGTTATCAGTACGAATTTCTGAAAAAGGCGGAATAAATTTCCTTTCGGATGCAGTGAGACTTTCTAGACCTTGACGTGCAACTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 24461-30337 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAA01000088.1 Fischerella thermalis WC538 NODE_134_length_32271_cov_29.529051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================================================= ================== 24461 37 100.0 36 ..................................... CTCCGCGAAAGAGCCGGCTCTCGTAGCCGGCTTTTC 24534 37 100.0 34 ..................................... ATCACGTTTAACCCTCGGCTCCCCAGTGGAGCCA 24605 37 100.0 35 ..................................... TTTATCCGCCCCGGTTCATTGCGCATCCGGTGGAT 24677 37 100.0 37 ..................................... CTCTTTGATCGGAGAAATAGCGGTGGAGGCGATCGCT 24751 37 100.0 34 ..................................... CTGCTCGCCTACATCGAGCATATGGAATCCGAGG 24822 37 100.0 38 ..................................... GCTGCTGGCTGGCTGGTCGCTGCTGGCTGGCTGGTCGC 24897 37 100.0 38 ..................................... GTGGTCGAATACGCCAACCGCAGAGGTGCATTGATGGG 24972 37 100.0 37 ..................................... CGCGGCATCTTCGCGGACGAAGCCGCCTTCTACGACT 25046 37 100.0 36 ..................................... GGAGAATAGTACACAGGACTTCCACTATATATATAG 25119 37 100.0 35 ..................................... CCAGCGCCAGATAGCGGCAGGATCGATCTTGTGGC 25191 37 100.0 32 ..................................... AGCCCAATCCGGCACGCAATCCACCTCAGCAG 25260 37 100.0 38 ..................................... GATTCTATCTCCGTAGCTGCCGACGCAATGCTCCAGGA 25335 37 100.0 35 ..................................... CCAAGCCCATCTCTCGGCTCTCTCTCCATCGAGAG 25407 37 100.0 34 ..................................... AGGTGGCAGAAAGGGCAACCTATCCGTATATACA 25478 37 100.0 41 ..................................... GAGGCGAGAGCGCAGGCATGAGAAGTCAGGAAGAAGATGAA 25556 37 100.0 40 ..................................... TTACTAACTTATTTAATAAACAAAAAATTAGCGAGATAGC 25633 37 100.0 34 ..................................... CCAGGGGACTCATTGCTATTTGAGCCCCCTTTCC 25704 37 100.0 34 ..................................... TAAATTGTGGCACTGAACACGACCGAGATGTGAA 25775 37 100.0 36 ..................................... CGCGGAGCAGGAGTATATTCAATGGCAGCGTATTGA 25848 37 100.0 36 ..................................... AATCAATCACAAAACCGGAGTATGTAGATGCGATCA 25921 37 100.0 34 ..................................... CAACGATTTCATTGATTCTAGTAATAGGAATTGC 25992 37 100.0 35 ..................................... GGCGATCGCTGAATGTCGAGGAATTACAAGCGATC 26064 37 100.0 34 ..................................... CAAGGATTGGGATGTTCGCGTCAAATACACTGCT 26135 37 100.0 32 ..................................... TAAGCCCGAACCAGATGAATTGGGCGAGTTGC 26204 37 100.0 42 ..................................... CATTTAAAAGCTTTAAAAATGCCTTTTTAGTATGCGTCGCAG 26283 37 100.0 37 ..................................... CTGGACATCTCCGATAGTGGATTGCATATATCCGTAC 26357 37 100.0 37 ..................................... CTGTTCAATCTCCGGTGGCAAAGATAGTCTCGTGACA 26431 37 100.0 36 ..................................... ATTTCTTTGGAAAAAGATGAGCCTATTTGTTCAAAA 26504 37 100.0 34 ..................................... TTGAATTTCTGGTTGTGCATCATCGTGGCACCTT 26575 37 100.0 37 ..................................... TGAATATCTATTCTCTGGGAAGCTGGATTTGGATGGA 26649 37 100.0 33 ..................................... AATAATAATGAACTTAGGAGAGATAAAACACTT 26719 37 100.0 34 ..................................... GTTTTCTCCCAAGGACGAACTTTGAATCGAGCGA 26790 37 100.0 36 ..................................... GGTAAACGCGATCGCGACATCGAAATAACCATAATT 26863 37 100.0 36 ..................................... GGGATTTACTATAGATTGATTGATTTGCAGGAGATC 26936 37 100.0 39 ..................................... AAATAAGCAAGAGTTTCAAATGCTTCTTGTCTAGCAGGA 27012 37 100.0 36 ..................................... TCTTCTTCCATTGCTATCATTTCTCAAATTTCTTCT 27085 37 100.0 40 ..................................... TAAGAATGGGAATTTCTCTGTACTCTCGAAGTACCACTCG 27162 37 100.0 39 ..................................... GCCTTTCGCCCAGTGCCAAGCGACACCGGCAAGAATGCG 27238 37 100.0 37 ..................................... CCGGCATTTCGATTTATGATCCTAAGATCGATGCTCC 27312 37 100.0 38 ..................................... AACAAGATCGGCGGAATTCCCCTTCCTCAGCGCAGCAG 27387 37 100.0 35 ..................................... ATTCTCCCAGAGTAATTAAACCAACTTCGTTAAAA 27459 37 100.0 40 ..................................... CCTTAATATGGTTCTAAGCCGCGTTTAATTTTTCTTCTAA 27536 37 100.0 33 ..................................... TTCAAAAATTCTAAAAACAGAACCCTAAAAGGA 27606 37 100.0 36 ..................................... ATCTATGGCATTAGTAGAACCACCGTACAACAGATC 27679 37 100.0 33 ..................................... GGATCTCCCCTATGGCACTCTCGAAGGAGAGAA 27749 37 100.0 36 ..................................... GGGAAGTACAACTTGGGAAAGGATAACCATATGATG 27822 37 100.0 33 ..................................... GATTCAGTAATATCGACTCCTGCCAACCAGCAA 27892 37 100.0 41 ..................................... TAGTGAAATTGTCCCAGAGACCGTCTGGTAGGTAATCCATC 27970 37 100.0 34 ..................................... TACCCAACCACTGGCACAGTGACCTCTTTGTTTG 28041 37 100.0 35 ..................................... CAGCTGGGACTCGACTTGGATTGGACGGAGACGAA 28113 37 100.0 36 ..................................... CAATGCATAAACACTGTATACATAAGCCAAATCAGA 28186 37 100.0 36 ..................................... CCCAGCACTGAAAGCCAAGGCATAAACTGCCGGATC 28259 37 100.0 35 ..................................... GGCATCATTATTAGAGGCGGGGAGCAGAGAAGAAG 28331 37 100.0 35 ..................................... GAAGAGATGTAGGAGCGTACGAGATTCCCACGCTC 28403 37 100.0 34 ..................................... GAACGCAAAATCGCCAAAGAGTACAAGCTGATTA 28474 37 100.0 34 ..................................... CGAGCAGAGCGATCGCCGACCCGGATCTCAATCG 28545 37 100.0 35 ..................................... GGAGATTTTCGGGATCCTGCGCAATCCCGTAGACA 28617 37 100.0 32 ..................................... TTCTTACAGACTGCACACTGCCCTAGTTGGTA 28686 37 100.0 35 ..................................... CCCGACGATCGCTAGCCTGTGCCCATTATCCTTGG 28758 37 100.0 34 ..................................... CTCTTATTTGTTTCTAGGTCATACAGATATGGGT 28829 37 100.0 35 ..................................... GACATCTACTGTGGGTAGATCTTCCAAGCCGGATG 28901 37 100.0 35 ..................................... TTGTAATAACCCTTACTCTCCACTAATGGCATTCC 28973 37 100.0 38 ..................................... GATGATGCTTTAAATTCTGCTAGGCAGATAGCCAAAAG 29048 37 100.0 37 ..................................... TTTTACTACCCCCAATAGAGAAATCGACTCGATCTTT 29122 37 100.0 33 ..................................... GCGCAATGATAGAAGTTAACCGAATTATCTCGG 29192 37 100.0 39 ..................................... TGGACTGGCAGGTACGGTGATTGGTTCGGTATGCTATGC 29268 37 100.0 36 ..................................... TTCATATAAGGGCAAGCTTGGAGACGTGATAGTAGT 29341 37 100.0 34 ..................................... AATCTCAGCAATGGAGTGGGGACATCGACTCCAA 29412 37 100.0 35 ..................................... GGAGTGCGAAAGTAAAAGAAATAAAGAAGAAATAG 29484 37 100.0 35 ..................................... AAGCTTCTAATTCATGCGGAAGTATAGGGGAATTA 29556 37 100.0 34 ..................................... CTACTGCATTGTATTTTTCTTTGTTAGTTGTACT 29627 37 100.0 34 ..................................... CCGGATCCTGAGCCTGGGGATTGCGCGATCGCAG 29698 37 100.0 43 ..................................... TACTTCCATCCAATCAAAATATTGCACTTTTCTTATAAGCCAG 29778 37 100.0 34 ..................................... ATAGCGTGACGACACGCTATAAAGATGCCCTTTA 29849 37 100.0 35 ..................................... TCTGTTATGGGCGATCGCGCTTCCAATTATTCCGG 29921 37 100.0 41 ..................................... TTTTTATTAACGAAGGACGTCTTGTTCGCAACCATATTAAA 29999 37 100.0 34 ..................................... GAATTGTGATCAGATCGAGATACTCCTCGATCTG 30070 37 100.0 35 ..................................... TTCGAGTTTACTTGCCACCGCAGTTACGTTTTTTT 30142 37 86.5 119 .........................G.C.T.....TT TGGTCATGAATTATGTGTGCATACATTTTTGTAGTTCGATGCCAAATCATTGTAGAGACGTAGCAATGCTACGTCTCTACGTCTGGTCATACCCGTGAATTGTAAATTCATATCTTGAT GC [30173] 30300 37 83.8 0 TCA.....C.....A.....T................ | G [30305] ========== ====== ====== ====== ===================================== ======================================================================================================================= ================== 80 37 99.6 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : GTCCAAAAATTAACAAGGCGACGATCGCGATTACCCCTACTTCTGTCCATCCCAGTCCAAACATAAGTGTCTCCCGTGAAAAACTCTACTTAAAATATAGTAGGGTGGGGATGTATGGATGATGTTGTGATTTTATTTGGGGTGTGTGGTTGAGTATCTTTTTTGAACCACAAAGCCACAAAGACACAAAGAAAAATCGATTTTGAAGTCCTAGTGTTATGGCGATCGCCCTAGGCTACTTAGGCTTGATTGGTGCAAACCTGTAGGTGTTTTTTGGAGCAGGTGAATTTTAATCGCTGGAAGCCCTACCAGTTCTGCTTTTGAATGCTTCTAAGTCCAAAAGGGGTTTGCACCAATTGTGAAATGCTTGCCAGACAAGGTTTTGAGCCTATTTTTTCTTCTCCGCCCTTGACATTCCGATGGCTGAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCA # Right flank : CTTAATTGCAATAATGTTTGAGATATAGGATTCCCAAATCATCCGTAAGAGACAAGCTCCCCGACTTTTCCAAAAATTCGGGGATTTTGCCTCTAATCAATTCAATGACTTAGGAATGTGATATTGAAAATTTCTAACTCAATTGTGCTACAAGTTGATTTTCCAATAGAGTTTCATTTGTGAGTAAATCCTCAACGGTGATTCGCAAAAAACGCTGTTCATCAACTAAAAACAGGATTTTAATTCGATCGCTTCCGGGAAAACCTGGTGGTGTAAGTTTAGCAATTGTCCTCGCTCCATCTCTATCATTAAGGGGTTTGACAGTGGTGACATCGTTATCAAGACGACGGGTAATCATGCGATCGCCATCAAAATAAACTTCTGTACCACCTGTGTCTGACCCCAATTCACCCATAATTAACTCAATGCTGGGCTGATTTTCTACAGAAGCACCCAAAACTAACTGTACTGGCTGAGTCATGGGATAAGGTTGCCCCTCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 4710-4019 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAA01000119.1 Fischerella thermalis WC538 NODE_274_length_123843_cov_31.502813, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4709 37 100.0 36 ..................................... AAAGGGCAGGGTAGTTGTCACGCCATTGCGGGATGC 4636 37 100.0 34 ..................................... TTCTGAATCAATGATTTCATTTTTCGATAATTTT 4565 37 100.0 35 ..................................... TTTGTGACCCAGAGGTGCGATCGCGCGCGATCGCA 4493 37 100.0 40 ..................................... CTCGATATTCCTGGTCGAATTGTTAGTCTGTGTCGCATAG 4416 37 100.0 32 ..................................... AACATCAATTCCGAACCTAGCGCGATTGCTCA 4347 37 100.0 37 ..................................... GAGAGAGACCCATTTAACCGACTGCGATCGCGCCCAA 4273 37 100.0 38 ..................................... CATTGAATGTATTAACAGTGTGTTGTGTGGTTTGGTCA 4198 37 100.0 35 ..................................... GATGAAACCAACCTCACAGTCCAAAACCTGCACCC 4126 37 100.0 34 ..................................... AATGGACTGGAACCATTTGGCGACGATCTATTGA 4055 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 100.0 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : TTGGGTAGGAAAAGTTTTGCAACAAAGTTCACCAAGTTAGCCCAAGGGCTTGTAGGTTTGTGTTTGCCTTGACTTTATCCTACTCTCAGGGATGGATGAGGGCTAAACCCTACAAAAACCACCCACAAGGCATTTACTGATTATGTTGTTGATCCTTTCGCTGATAGCTATTCGCTTCATCAGCACACAGCAGTCATCAGAAACTAATATACAGCGTATTAATATCCACAATCTTTGCAGCCACTATGATTGACCCAAGTTTTGCGAAAATTTTTTCAAATTAGCAATAATACTTATACAAAAAACTAACTAAATTGGCTCAAATCTCCGAAAAAGCTGACTTTCTCGTAATTTTTATTTACAAAATTTAATACTATCTACGCTTTCATCTCAGGGAACACAGANNNNNNNNNNACTCAAAAGCTCTTTAGATTTTCTTTACGAATCACCTCTTAGGGATTGAAACTCTCTTCGTCCTAGACCAACTGGAGCGTTCGCGG # Right flank : AAAAATCCATTAGATGTAACCAAACCACTCACAATGAGTAACTAAAAAATTACGTCGAGAACCAAGAACAACCAAAACAATGATTCGCTACGCTCAGTTTTATATTGGTCGCAATTCATCTGCCGTTAACTCTTTCGCCTTATATCCCGCCACTGATTCGGAGTACCGAATTCAGTGGGGGACGAGGGCGCGAAAGAGTTAAACATGAAATGCTCTACAACGCGATCGCCTCTAATACCAATTTAATGTGAAGCCGCACCAAATGACTAACCCTCCACTCTTGGCGTTCTTGGCTTCTTGGCGGTTTGTTTTTTAATATTCTGTACATCTTCATAAATAATTGCATTTCGTAAGTTCATAGCGAAATGTTTGCACAAAGACTCCGCGTCCCTCTGCGTTTCAAATCGCTACTTTTTCATGCAGTTTTCAGGCCTACTTCTATTTCTTCCGCCCGCCAAGGCGAATAGGCAACTACTTCCTAGATATATGCTTCTTCTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 2 7662-14006 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHAA01000119.1 Fischerella thermalis WC538 NODE_274_length_123843_cov_31.502813, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 7662 37 100.0 38 ..................................... CAGATTTCTCTCTGGGGAGAATACTGCACAGAACTTCC 7737 37 100.0 35 ..................................... TTTGCTCAGTCTAGCACAGAAAAGAAAAATGGCTC 7809 37 100.0 33 ..................................... GTCGAGGGGTGGGACTGCCTCGCCATAGGAATG 7879 37 100.0 40 ..................................... AGAAAGCTTTAATGGCGCTTAAAGCTTTAATGACGCTTAA 7956 37 100.0 36 ..................................... TAGCAAAGATTTCGATAATAGCCCTAAACTCAAGTG 8029 37 100.0 33 ..................................... GATGTCGAGCAGGAGATCAATCCTGCCCGCGTT 8099 37 100.0 34 ..................................... CCAGCGATCGGATTCAAAGCTCCGAAGGCGGAGA 8170 37 100.0 37 ..................................... ATTTACGGAGAGCGGTGTAGTGAAATCCCTCTCCCCG 8244 37 100.0 33 ..................................... CTTTTCTCTGCGCTTGAGCTTGGGCTTGGGTGC 8314 37 100.0 35 ..................................... ACAAGCCGACAAGTTCGTGGGTGCGATCGCGCTCC 8386 37 100.0 35 ..................................... CTTCGGAAAGCGATACGCGATCGCAGCGATCGCAC 8458 37 100.0 40 ..................................... AAGGCAATCGACGACATGGACTTTATTCGGCTCGGCTGTC 8535 37 100.0 35 ..................................... GGGATGCGCCCCCCTTCGCCGGCATCTATGCGATC 8607 37 100.0 36 ..................................... CGCTATTCTTCGGGCAGAGAAATCTGCACACTTTTT 8680 37 100.0 36 ..................................... CAGACGCTTCTCCATCCCGGAAGGGCACTGGTTTTC 8753 37 100.0 37 ..................................... GCATAGTAGTATTGGTGCCACTGATTTACTACTTCCA 8827 37 100.0 39 ..................................... CGCCTACTGCTCGCTCTCTGCCAAATTGCGCAGGATTTG 8903 37 100.0 35 ..................................... CGATCGACTTCACCCATTCGGCATTTATCCCCGCA 8975 37 100.0 42 ..................................... GATGCGATCGCTCCAGACCGCCAAGACATTGCAGAGCTACAT 9054 37 100.0 36 ..................................... CCGGCAACTCGGCGTGACATTACTCACCTCCCTGAC 9127 37 100.0 43 ..................................... TGGGCAAGAATTCCTGGAGTTGCTGACTCGGATGGATTTGCAT 9207 37 100.0 34 ..................................... GACGGGGAAGAAAGCAGCTTCACCATCAACGAGA 9278 37 100.0 36 ..................................... TGGTGCCGATGGTGCGATCGCCAATGATAAGGAGTT 9351 37 100.0 35 ..................................... GATGCCAGCAGGCTCCCTCCCGAATGGCACCCGGA 9423 37 100.0 34 ..................................... GCGGTCGAATACGCGAGCCGCAGAGGCGCATTGA 9494 37 100.0 37 ..................................... GATGTCGATGATTTCGATGTCGGCTAGTGCCTCTGTC 9568 37 100.0 32 ..................................... TCGATTCGATTGATTTAAGAACTTTTTTTGGA 9637 37 100.0 34 ..................................... AGATACATGCTGGGTAGCGCAAGACGCAGCCCCA 9708 37 100.0 34 ..................................... CCATTTTTTTATCGCTATTCTCCGACCAGAGAGA 9779 37 100.0 33 ..................................... TAGCTTTGGAAGGCGTGGTGGGAGGGAGCATCA 9849 37 100.0 40 ..................................... GGCGGCGCATTCGTCGAAATGCAAGACAATTACCTCAAAA 9926 37 100.0 33 ..................................... GTCTGCTGGGGTCGATTCGGGGCGCATAGCCAA 9996 37 100.0 34 ..................................... ATCGAAATCTTCTCTAGGCATCATACTCTGATCC 10067 37 100.0 34 ..................................... ACAGCATCCGACGGAGCCACCCTGACCATCAGCC 10138 37 100.0 36 ..................................... ATTTTTGCTTTGATAAAGCTCTTGGTGTCCCAAGAG 10211 37 100.0 36 ..................................... TGCCGGACGAGCTGCCCGGAGCCATCGAATCCTAGC 10284 37 100.0 35 ..................................... AACTAAGGAGGTAGCCAAATGAAAAAAGATAAAAA 10356 37 100.0 34 ..................................... GGTTGTAGTAAGCCAGTGCCTTATCCATAGTCCA 10427 37 100.0 35 ..................................... GAGTGAAGTAGCCGGACAACGAGTCCGGCTCTTTT 10499 37 100.0 35 ..................................... CTATGAGGCGGTTCTGGACTTGCCTGCGGATATTC 10571 37 100.0 38 ..................................... AAAGAAGGCTTCCACTGCCTCTGACAACTTTAAGCCGT 10646 37 100.0 36 ..................................... CTCCGAGATGACCAGGAGACCTTTCCCCTCTCTAAC 10719 37 100.0 36 ..................................... ATGGGTGCAATGGGGAGCGATCGCCACTAAGACGCG 10792 37 100.0 34 ..................................... CAAGGGGTGGGGACGATCCCGCAACCAACGAGCT 10863 37 100.0 33 ..................................... CTAGTATCCGTGAATATCAGATCACGTCCGGCA 10933 37 100.0 41 ..................................... GGCGTATTCGACCTCGACTGGGGCTTTCCAGTTCTTCGTGA 11011 37 100.0 37 ..................................... AATGCCGAAGTCGCCGCATTGAACCGAGCTTTGGAAG 11085 37 100.0 35 ..................................... CCAGTCTGGCGATCTTTTGGATGTAGTCTGGGTTG 11157 37 100.0 41 ..................................... AAACATCAGATCTGTCCCCGCTGCCGGGAGCGTAGCGGGGA 11235 37 100.0 33 ..................................... TATAGTGGATATAGTGGATATATCGGAGATATG 11305 37 100.0 35 ..................................... AAACAATTAAACAATCTCAACGCAGATATTATTGG 11377 37 100.0 33 ..................................... CATACCAGAGTCGCCCAGCCCGTCCCCTCTTAG 11447 37 100.0 34 ..................................... CCCAGGATCCCCGCCCAACTCCCCGCAAAGACGA 11518 37 100.0 34 ..................................... TCTTTTCTTTTGATAAAATCAAATTGATCACCAT 11589 37 100.0 33 ..................................... TGATAACCCCATCCTCATAGTAAACCTGATCAA 11659 37 100.0 33 ..................................... CGAGGGATTTGGGGGTGCTGCCGCTCGAAGAGT 11729 37 100.0 34 ..................................... GTGGCTGCTTGCTGACTCGCCGGCACAGCCAGAT 11800 37 100.0 34 ..................................... GAGATTAGCAGTATTCTGAGCGGTAGCACAATAA 11871 37 100.0 34 ..................................... ACTTTGATGGCGATGGGCAAGATGAATTGTTGTT 11942 37 100.0 40 ..................................... CTTGTTTTTGCGATTGCGTGAAAGTGTTCCACTCGGCGAT 12019 37 100.0 33 ..................................... CAAAATTATGCCAATCTCTTGCATTTTTGGATT 12089 37 100.0 34 ..................................... CTGAGCCAAGCCGCATACCACTCTCTGTACTATC 12160 37 100.0 34 ..................................... AGCCCACAGAACATCATTGAACCCATCGCTGTTC 12231 37 100.0 37 ..................................... AACTGGCGATCGCGGGCTGCACACTTTTTCCTATATA 12305 37 100.0 34 ..................................... GAGGATCAATGGAGCATGAAGGAGAAATCCAGTG 12376 37 100.0 32 ..................................... CGTGGATGATAGCCGCCACCACGCCTTCGAGC 12445 37 100.0 37 ..................................... GGATCTTCTTTTAATTCTCCTTCTGATTGTCCTACGC 12519 37 100.0 34 ..................................... AGGATCAGAAGGATCGAGAATTTGTCCAAGATTA 12590 37 100.0 33 ..................................... GGTTTTGGAATTTTTACTCCACTCCCAGACCAC 12660 37 100.0 35 ..................................... TTTCAGCTGCTTCAATCGCTTTGGCACGCTTGATT 12732 37 100.0 36 ..................................... ACTCGACTGGATTTAGCTCTTGACGATTTTTCCAAA 12805 37 100.0 33 ..................................... ATCGACCCCTTTACCTAGCGAGGGATCCCATTC 12875 37 100.0 41 ..................................... CGATACTTTTTTCGCTACGTTGGCGATCGCAGTCGCCCAGG 12953 37 100.0 37 ..................................... CCAAAGTGGCACGCGATTTATCTAATAGGTGGCACGC 13027 37 100.0 33 ..................................... GTAGAAGACTAGCGCGCTCGCGTCAAGAGATGG 13097 37 100.0 33 ..................................... GTGCTTCTGGGCGATGGGGTCGAGCGATCGCCC 13167 37 100.0 33 ..................................... CGCGGAGCGTGCCGGAGGCATTCGCTGCCGACT 13237 37 100.0 37 ..................................... GCGCCACAAAGGATGCGATCGCGCCCCAACTCCGAGT 13311 37 100.0 37 ..................................... CGCTATTGACTCATTGGGACTAGTGGGACATTTGTTG 13385 37 100.0 40 ..................................... ATACTCGCTCATTATTATGGAGGGGTTGTCGGTCACCGTG 13462 37 100.0 36 ..................................... TCCGAGGAGGTGCCAGTTGGTGGAACCCAGCCACGG 13535 37 100.0 35 ..................................... CTAGCTGATTAGGGTGCTCATCGAGCACCAGAACA 13607 37 100.0 34 ..................................... GAGATTCGATAAATCCAGCGATCGCTCTCCTTCG 13678 37 100.0 33 ..................................... ATGCCGCTTTCGGGGAGCACGCTGTGCTCCCTA 13748 37 100.0 40 ..................................... CAAATACGAGCAACGAGCACACTTGCCAGCGCTAACTTTG 13825 37 100.0 35 ..................................... CGATTGAGCAGAGTAATCCTCCTTCGTGCCAAATA 13897 37 100.0 36 ..................................... AGCGGCACTGCTGCGATATCTGCCGCCGGAATAATT 13970 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== =========================================== ================== 88 37 100.0 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCTGACGGTACAGCAGCAAATATTCAACGCACAGACTCAATCAAAGATGGTGTGATTACAAACTCTTGGACGATCGCAACTGGTGATCCTATGGGTAAGCATAAAATAGAAGTTTATATTGGCGATCGCCGTATTGCTACTTTTGAGTTCGAGGTGGTTCCAGCTAAACGGCAAAAGCCAGCTCCAAAAGCGTAGTTACAAGTTTTGCTATAGTCGATAAATAAAGATTAATCTCTCTTCAGCTTAGAGTTGGTGCAAACCTGTAGGTGTTTAAAAAAAGCAGTCAAATTTAATGGCTACAAGCCCTACCTGTTATGGCTTTGAACCCTTTTACACTCAGATAGAGGTTTGCACCAATTCTGAAAGTCTTACCAGCAAAGCTTTTGACCTATTTTTTCATAATTCATCTTGACACCTCGATGGCTGAAAAGCTATATTTTGTCCAGGTCTGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTCCTGAATCTAGCA # Right flank : TCCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGATTTTGTTTTATCTTTTAATTGACAAAAACTCAATCCTTGGCGCTCTTGGCGTCTTGGTGGTTCATTATATCACCGCTACGAACAGACCAGCAAGACTGAAACTAGCAGTGGTAATTGCAAAAGTTCCCGTTTGCAATAAATTAACTAAAGTTCCTCCGATGACTGCACCCACAATTCCTAACAGCATTGTTGCCAGGATACCACCACCTTGGTAACCAGGATAAATTGCTTTGGCGATCGCGCCAGCCAACAAACCTAATACAATCCAAGCAAGAAGATTCATGATTCGACTCCTTAATAGTTGCGAACAGAATATAGTTGAAGATAGAGTTTTAGAGATAATAAGGTTAGAGGTTTATAGACCCTAGACGTTCGCAAATTTCGACCGCTTTATCGAGGTTTTACCTCTCGTTATTTGCGAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA //