Array 1 13217-13072 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAW01000002.1 Holzapfelia floricola DSM 23037 = JCM 16512, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================== ========================================== ================== 13216 21 100.0 40 ..................... TGATCCTCCTAGATCTGCGTAGTTCAAATCGTCAGTTTGC 13155 21 100.0 42 ..................... TGATCCATACATATTGGCATTGCGACTAAATACTTTGTCAAA 13092 21 95.2 0 ..................A.. | ========== ====== ====== ====== ===================== ========================================== ================== 3 21 98.4 42 TTTTTCTCGCACACGCGAGAG # Left flank : ATCACCAAATTATTGAAATTGGTGCAGTGAAAGTTTCGTCTGATAATACTCAAGATTTTCACGCTTTGATTAAGCATAATCAAGATAGCAGGTTATCTGCAAAAATTGTTGAATTAACAGGAATAACAGATGATGAATTAGTTAAATACGGAGAGCCATTGAGTGAAGTTCTATCAAATTTCAGCAGATTTGTGGGCGAAACGGTTTTGGTCGGATACAATGTTAATTTTGATTTAGATTTTATCAATTATAATTTAGATAAATTAAGTTACCCGTTAATTACGAATAACCGTATTGATTTGTTGAAATTGGTTAAACGTGAAAAGCTTTTTGCTAAGAATTATCAATTAAATACGATATTGAAAGAGTATGGTATTGACGATGAAGCTCCGCACAGAGCATTATTTGATGCAAAATTAACAAATCAATTAGCGACAAAAGTGTCTGGATTTGATAGAATGTTAAATAACAAACGTTGATCTAAAGGGATTTTTTTAGTC # Right flank : AAATGAAAAATGTCTATGCGATGAATCAATCACAAAATTCAAAAAGACAATTGCCACGATTTTTGAAAATGAGTTGACTAAGATTAATAAAATACCAGACAAAGCTAAACGAAATCAAGAAAAAAAAGAGATTACGTTTAGAAAAACAAGAAACATTAACTAAAATAGGAAATGACTCTCAAGCGACTGTTGTAGGGGATAAAACAACAGTACAATCAAAGGCTAGTATTTCCTTTGTTTATGCAGATGAAGACATAAAAGAAGAAGTATAGGATTTTCTATACTTCTTCTTTTTATATGGTAAAATTGAATCTACTTTATATTGAGGAGTCAACTATGAAAAAAAATTAAGAACCGTAGGCGTTATTATTGTTTTTATTGTAGCAGGTGCGATGCTGTACAATTTATTTGGTGGGAGTGACAACCAACAACAGGCTAATGCGCCACAGAATACGACGGGTATTGATTTAGATTCTGCTGATCTAGGCCATCAAGATATT # Questionable array : NO Score: 4.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:-0.5, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTCTCGCACACGCGAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 6822-7336 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAW01000005.1 Holzapfelia floricola DSM 23037 = JCM 16512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6822 29 100.0 32 ............................. TAACTGGCAATGTCCCCAATTTGAAAATTGGG 6883 29 96.6 32 ............................C GAACGTTAACCACTTCATCAGTGACTAAACGT 6944 29 100.0 32 ............................. TCATAGACGTAGCTCTTTTAAGGTTCTTTTGA 7005 29 100.0 31 ............................. TAAAAAAACAAAGTATTTAAATTTAAAATCT 7065 29 100.0 32 ............................. CGAACCCTTTCAAGACGCCAGTATCAGTTCAT 7126 29 96.6 32 ............................C GAGGAAAAACTCGATATCGAAGCCAAGCAAAA 7187 29 100.0 32 ............................. GAATTAATCATCAACTATGATGCAGATTATAA 7248 29 100.0 32 ............................. CACAGCTAAAATCACAACTTGATAGTACGCAA 7309 28 86.2 0 ............C.........-C.A... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.7 32 CTTTTTCTCGCATACGCGAGAGTGATCCT # Left flank : AACAAGGGCAATACTATATTGGCAATGTTGTGGCTTCTATGGGCTATCCCAAAAAAGTCTTAGACAGCCAACCGTTACCCGTATTTAACGATACGATTGACGTTGATTATGCTGGTGTTAAAGAAATCAATAATCAATTTGTTAGTTCTGGCGGTCGCGTATTGATGGCAATTGCTCATGATCAAGATTTAGCTAAGGCACAAACAAAACTTAATGATGCTTTAGCTCAGTCTGTTAACAAAGCTCATTATCATTACCGAACAGATATTGGTAGTAAAGGAATTAAATTTTTAAGTGCTGAGAAAGTTTAGTAATAAAACAAAAAACGTCCATGTTATTGGACGTTTTTATAGTGATTTTTTCTAATTTATCCACGTGAACTCATTGACAAAGTTATCCTTGTTGATTAGGCTAGTTGACCATAACGGCAACTGGTAAAAAGTGTCTGAATTTGATACACTATAAAAAATGAAACGTTGATTTGATGGGATTCTGTTAGT # Right flank : TTTCAAACTTTAAAAATCATATAATAATAGCCGCTACATTTTTACTAATTTCATTAATCGCTGTATACTATAAAGTACTTAGTTGAAAGAAGAATAACATTATGAGAAATAAACGTTTAGCGGTATATTGCGGTGCCAAGATTGGCAATAATACCAAATATAAAGAAGCTGTCATGTCACTAGGTCAAAAAATGATTAATCATAATTTTGATCTTGTTTATGGAGGCGGAACAGTCGGTTAATGGGTGTCATTGCAGAAACCGTACTGCAACAAAATGGCGAAGTCTATGCAATCATGCCTAAGTTTCTCAAGGATTTAGAAGGTTTTGAAGACGAAGCGCAACACACTGAAATTGTCGACAGCATGTCTGTTAGAAAGCAACGTATGCTAGAACTATCAGACTTTTGTATAGCCATGCCTGGTGGTGCGGGAACATTAGAAGAAATCGTAGAAGCTTATTCATGGCATATATTGGGTCAAGTCAATAACCCTTGTGCTT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCTCGCATACGCGAGAGTGATCCT # Alternate repeat : CTTTTTCTCGCATACGCGAGAGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.90,-8.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 96222-96586 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAW01000005.1 Holzapfelia floricola DSM 23037 = JCM 16512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 96222 36 100.0 30 .................................... TGTTAGTTCGCCTGATTGGAAAGCTCCGGT 96288 36 100.0 29 .................................... TTGTCATACTCACCATCTATACTGATAAC 96353 36 91.7 30 TG..T............................... TTGCCTTCTCATCAGCAGTAATTTCAACAC 96419 36 100.0 31 .................................... CGGTAGTTTTTCGATACCAGGTTGACCAAAT 96486 36 100.0 30 .................................... TGCGGAATCTGCCACGATTTTAGCACCTTC 96552 35 94.4 0 ...............................-..T. | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 97.7 30 GTTTCAGAAGTATGTCATTTGAATAATGTTAGGACT # Left flank : ATCTAACTCATTATTTTGATTCCAAAGATTTTGATAAATTAAATGAATTATTATCTGACTATGACCAAACCGCATTGTCTATTGAGTTTAATCAATCAAAATCTAGTGATGATCATTCAGATTATCTAATTGATGAGGACTTTTGTTTATTCGAATCCTAACCTTGACTTCAATCAACTAATGTATTATATTTGACATGTTCTTAACATTATTCAAATGACATACTGAGTTGAAATCAAACAAGGATTTATTCCAAGTTTTATATTTTGAACCTCTTTTTGAGGTCAGACCTCTTTCTTAATTGAAAGAGGTTTTTTTGTTGCAATTTTTAACAATATTTGTAATAGTAGTGGTAGAAGTTTGTTTCACTTAGTTTTAATCTAGCTCAGACCCAATTAAATTAGCTTGAACACCTATTTTTAAAGGGTTAATCTAATCTGAAACCTTTGTTTAGCGTTAGTCATTAACTTTCAGTATGAGTTATTTCTGATAAAACATCG # Right flank : TATGTACCAAGAACATAAAAAAAAGAAGGACTACTCTTTTAGAGTACGTCCTTCTTTTATTTAGTATAAACCCACATATTTTTGAGTTCACTTTTGATATCCTCAACGGTATAAGTTGTCAGACTATGTTTTTTTAGTATCATCGTCATTTGGATCAAGCAAATGAATACCTTGCTCATCCATACTTGTTAATACCATAATATGACCGACTTTAGTAAATTTGCCAGGATTAACTGAAATCACAACTGGAATTCCAATTTTTAAATAAGAAGTGGCTAGTTCAAGATTATCGGTTAAATCCGCAACATGATAACCATAATTCTTGGCGAAATCATCAAATATTTGCCAAGAAGTGCCATAATCCGTAAAGTAACGGTTCTGCGCCCAATCTAGCACTTTGTTCGGGGTCGTTGTCTCATGATCAAAGTAAGCATTAATCATAGATAGTGCAACAATTGCACAACCATTCTTATCCAACGTATGATAATCACCATGACCAT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTCATTTGAATAATGTTAGGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 69415-69047 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAW01000006.1 Holzapfelia floricola DSM 23037 = JCM 16512, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 69414 36 100.0 31 .................................... ACAGGTCAAGACTACGTCAATGATCAACCAC 69347 36 100.0 30 .................................... GTTGAAGCAGTATAGAACTACTGGCTACTT 69281 36 100.0 30 .................................... TAAAATTATGAACACAGTAAACTTAATTGG 69215 36 100.0 30 .................................... AAGCTACTTACACCGCTGTTTGTCCCTTCG 69149 36 100.0 30 .................................... TTAAAAGCTTTAACATGTGGACCCAATCTG 69083 36 91.7 0 .................................TGA | G [69049] ========== ====== ====== ====== ==================================== =============================== ================== 6 36 98.6 30 GTTTTAGAAGTATGTCAAATCAATAAGGTTAATACC # Left flank : CCTTGGTAGTTAATTTTGATTATACTAATGCCAAGCTATTTAAATATGCCGAAGTAAAATTTGATTCAACTATTTTTCTTAACCCTTTGGAATTATTGCTAACTTATATTAAAATTCATGCTGAGTGTCAAGACGAACGAATTGTTACAGTTATTAACCCCAGTCATTTTTTAACCGTGGAAGATATGATAGTTGTAGAGCGATTATGTCAGGAAACACAAGTTTCTTTGTTGATGATTGATTATTTACATCAAGTAGATTTTATGAACTATTCTCACTGCCTAAAATATTATATTGATGAAGACTTTATTGATTATTTCTAGTATTATTTATATAATTAAGAGGTCAAATCAAAGTTAGTTAGCCACTAACATACTTGTATTATTAAAATATAATGAAATATCTCAATTGTGAAAAAAAGAAAGCTTTGGAGGCTTATTTAGTAGTAATTGATTAAGGTCAACTTTATTGGTTAATGACATGTTTATGATAAAATGATG # Right flank : ATAATTGAAGTAAATTGAGAATATGAGTATAGAAGAGTTGAGCTATGAAAAAAAGTTTGACTCTTTTTTATTTAAAAATCAATTAAGTTCATCATCATATCAAGATAAATTAAAGCCGACATGATAGGGTTAGTATTCAAATGAATTCTCTTTGGAGGAGAAACGATGAAATCTATTAAGAAAAGACAGCTTTTATTGGGGTTAGTTGTCTTATTGTACAGTATTATCGTATTATCTTATGCACTTTTTCCTAAAGCTGAGTTGAATCAATTTTTATCAACACAATTAGGGCTAGCACAGGTTTATGCATTTTCACTGTTTTTTGGTATTGTGATCATAATCTTCGCATTATTAATGATTGGCGTGAATAGCTACAAGAAAGATAATCGAAAGCCTCACTTATCATGTGGTTAATGATGATAGTATTATCAGGCGTCTTAGTCGTGGGTAGTTGTGAGAGGAGCTTTACTAATCAGTTGGTTGATTCAAACCAGTCATCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTATGTCAAATCAATAAGGTTAATACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //