Array 1 5224-5976 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMN01000004.1 Halobacterium hubeiense strain JI20-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5224 30 100.0 34 .............................. CCCACGCTGCGTAATCTCAACGCCCTCCACGTCC 5288 30 100.0 36 .............................. TCCAACCCCTTATGATGATGGCAGTAATCGTGCTCG 5354 30 100.0 35 .............................. CTCACGAGCGAGCTCGGGTTCGAGGACATGCCCGA 5419 30 100.0 37 .............................. GCTTACTTGCGGGTTCATACTGCATTACACCCTTCGG 5486 30 100.0 37 .............................. ATCCGGATGCAGCTCGCCATCGAGGAAGCGCTGTTCG 5553 30 100.0 36 .............................. ACAGTCCGCCGCCCGAACCGCCGCTTGCCGAGCCCG 5619 30 100.0 35 .............................. ACCCGGAGAACAAATCAGCCAATCACTCCAAGTAG 5684 30 100.0 36 .............................. CTTGAATGTCGAAACTGATAGTGTAGCGTTGTAGGT 5750 30 100.0 35 .............................. CCGGCGTAGTAGTCCGGGTGGCACGCATCAGACGA 5815 30 100.0 35 .............................. GAGAACTATACATCGACAGGGGGATGTCCTCGGCG 5880 30 100.0 37 .............................. ACGACGCAACCGTCGATTACGCGCCCGAGACCACCGA 5947 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 100.0 36 GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Left flank : TGCGGTACTCGCCGGACTACGCGAGTTCTGCGACAGCATGAGACGCTATGTGTCTTCGTATTCTTCGAGTGTGACTTGGGAGGCGTCGAGGCCGGCTTTCCGGGGGTCTTGCGAGGAGAACTTCCTCGCTAGCGAAATCCGGGCTTCGTAGCTGAGGACTGCAATTGTGGGGATGGAGAACGCGAGAAGTGGGGTGATCTGTGTTTGGAGAATTAACTCGCCAGCAGCGTATGCGAAGAATGAGTCTGCGACAGACAGCCGCCTGTCAGGCGCGGCACCGACACGAGCGCAAACGAACTCTCCGCAAGACGTACGAGTGATTAGCCACGGAACAGCCTCGTCCCGCTGGCCACACTGACTCGGGAGATCGTATTCCCAGCGACGCGGAGACACGACGATTCTTCATCGACCCCCGGGGGGTTCAGGGACTATTGCGGGTCGACGGAAACACCGAAGTATATCTGGGCTGTAGCACCGCTGAATGCCCCTAATCGGGCATG # Right flank : CNNNNNNNNNNTGCGGGCGTCCGAGACTGCTTGATGGGAGGTCCCGCGGACCTCGGCCCACTCGTTACAGCAGAACGCTAGTGCGGTTAAAGCGTCGTCCCCGCGAGCATCGAGGCGGCGACCCCGTCGGGTTACAGCAGAACGCTAGTGCGGTTGAAGCTGGTCCGGGATTCTCCCTGGTCGTGGTAACGGAGGGGTTACAGCAGAACGCTAGTGCGGTTGAAGCCCGCGGTCGCAGAGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 2 7106-8120 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMN01000004.1 Halobacterium hubeiense strain JI20-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7106 30 100.0 35 .............................. AGAACCTCCAGCGCGAGGATGATACCCCCGCCAGC 7171 30 100.0 38 .............................. CCCGGCGCCGCCAACCCCAGCGTCGGCAGCGTCACGGC 7239 30 93.3 36 .......T.....................T GGTGAGTGGGCATGGCTGGTGGACTTCACGCGGCGG 7305 30 96.7 35 .............................T GATTGGCTCGTCCAGGGTCGGCCGCTCGGAGGTGC 7370 30 100.0 37 .............................. ACGCAAGCACTCTCGCTGGTGTCTGTCATGGTGTCGC 7437 30 100.0 37 .............................. GTCGCCACGGCGCCGTCGCCGTCCGGGTCGGTGAAGC 7504 30 100.0 35 .............................. AACGAGGACCTCGTCGACTGGAGCGTCGAGAAGGA 7569 30 93.3 35 .......T.....................G GAAACGGGCGTAACGGAGCAGAACCTCGACAGCAG 7634 30 100.0 36 .............................. TCGACGACAACGACTAATACCGAGTCTAAAACACTG 7700 30 96.7 33 .......T...................... GGCACCTGGCTCGCCATGGAGTGGACGGGCCGC 7763 30 93.3 35 .......T..................G... CTGAACACCAAGCAGGACCCCGTCGGTGACGTCCT 7828 30 96.7 37 .......T...................... TCCCGCCGCAGGCGTTTACGAGCGCTATCACCTCCGA 7895 30 96.7 35 .......T...................... TGCCCGTACGGCGTGAGCTCTGCTGTCCCAGATGC 7960 30 93.3 35 .......T....T................. AGCACCCACTCCGGCGTCTCCCCGCCGTCGACGGT 8025 30 93.3 36 .......T.................A.... GGGGCGTATCTATCGTGACTGACCCATAGCCCGCAC 8091 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 97.1 36 GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCGGTGTGCTCGTCACC # Right flank : CGACGCGTCCCGTTGGAACGTCGCCGCGTCCTTCCCACCGTGCGGAAGGTGCGACGGCGGGCATCGGGGGCCGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGAAGCCGAGGGGCTTGACCCCGAGGCGGTTCACTGTCTGGGGATGGCGTCGACGCTCGACATCGACCTTGAGCAGGCTGTCGAGAAGAAGCTAGCTGCCAACGAGCAGCGATTCGACGAGGAGGCCGCCGAAGAGATCACCGAGCAGTTGCAGTCGTATCAGCGCTGACTACGCCGTCTCGAGGTCGAGGTCGGACTCGATGTCGTCGAGTGTCTCGATGAGTTCGCGGTTGTACTCGTTGCCGTCCTCGCCGTTGTGGACGCGGCGGTGGCAGGTGGGGCAGAGCGCGATGACCGCATCAGGCTTGTCGGGTCCCTCGTCGCTGACTTCGAAGACGTGGTGGACTTCCAGGTACGGGTCGCCGGTGCGGCT # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 13409-14303 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMN01000004.1 Halobacterium hubeiense strain JI20-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================= ================== 13409 30 100.0 35 .............................. TAAGTCGGGCGACACGGCGTCGACGCCTTCGGTAA 13474 30 100.0 37 .............................. ATCGACTGGTACGAGAACAACGCGTATCCCGACCGTG 13541 30 100.0 32 .............................. AGGGCGTCGGCGAACTCACCGCCGTTGAACTG 13603 30 100.0 36 .............................. GATGCATCGCCAGCAGACATTATCTCCGTCGGAGAC 13669 30 100.0 34 .............................. CCGCGCTCGGCCTGAATGCCGGAGATGCCGCGGG 13733 30 100.0 34 .............................. TACGACGACCTCGCAGTCTCCGACACCTATACCG 13797 30 100.0 34 .............................. CGTCTCGCCGTCGGTCAACAGTCCCGAGTGGCTG 13861 30 100.0 37 .............................. TCGAAGACGCATCCGGCGAGCGCGACCGCGACATGGA 13928 30 100.0 37 .............................. CGACGTCGCGCCGGCATCATGCCTCCGGCAGGTGCCA 13995 30 100.0 34 .............................. ACGAACAGCCCGGACACCGACGAACTCGCAGGCT 14059 30 100.0 35 .............................. CATCAGTCGCCGCCGTTGTCTGCGTCCTGCTCGAC 14124 30 100.0 35 .............................. CTCTCTTTGCCAGAAGCCACGCCGAAACTAATACA 14189 30 100.0 55 .............................. CGCAGTAAACCCGACCCCGAACACCCATGGCGGTACGTCTGCAAGGAGTGCCATA 14274 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================================= ================== 14 30 100.0 37 GTTACAGTAGAACGCTAGTGCGGTTGAAGC # Left flank : CTACCACGGCCTCGACGCGAAGTTCGAGCGACAGCAGCCGAAGTCGATCCGAACCCGTTCGCCAGTTTGCGCTCGCCGACGCCGACGGCGTCTATCAGGGCTGCGGTGAGAAGGCGCCGTTCGAGACTCCAGCCGGTCGCCCATATCTGGAAGTCCATCACCTCTACCGGCTGAGTGATGGCGGTTTCGACGACCCTGAGAACGTCATCGCGCTATGTCCGAACTGCCACCGCCGCCGTCACGAGGCAAGAACGACGACGAGTTCAACCAGGAACTTATCGAGAAGGGCGAAGAGCGGAACCGCCGAATTCTGTCCGAGTGATTAGCCGTGGAACCCCATCGTACCGCCGCCTACACAGACTAGGGAAATCGGATTTCCAGCAACGCCGGTACTCGCCGTTCTTCATCGACCCCTAGGGGTTCAGGGAGTATTGCGGGTCGACGAAAACACCGAAGTGTGTATGGCTTGTAGCACCGCTGAATGCCCCTAATCGGGCATG # Right flank : CTCTCGACCGAACGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGAGAGTTCCAGCGGCAGCACGAGCGAGCGCGTCGTTACAGTAGAACGCTAGTGGGTTGAAGGGAATGGGTGAACTACACAATCGCCACCGAGCACACGTTACAGCAGAACGCTAGTACGGTTGAAGGTCCAAGATCTCCGGTGGGTTCCGGTCAACGAGACGGTTACAGCAGAACGCTAGTGCGATTGAAGGATTTCCCAGCGGACGCCCAATAATACAACCGCCACCCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGTAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 4 40719-40423 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMN01000004.1 Halobacterium hubeiense strain JI20-3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 40718 30 100.0 35 .............................. CGCGACTACTACAAGGAGGAAGTCCTGAAATTCGC 40653 30 100.0 38 .............................. GTCGGATTGGTCTCGACCTCGACCGCGAACGGCGGCTC 40585 30 100.0 37 .............................. CAGATTGGCGACCCCGTGATGGACGCCGCGCAAGGCC 40518 30 100.0 36 .............................. CCCCGCCAGCGCCATCGCCGCTCCCGTCTCCGGGTA 40452 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 99.3 37 GTTACATCAGAACGCTAGTGCGGTTGAAGC # Left flank : TAGAGTGAAAAAGGAGAGTCTAGGAACCTCCTCGGAGCCACGATCTGCTGCTCAGATACCATCCGGAAATTCCCCTGTTGGTCGTCTTCTCTGACCGGTATCGGATCTCTATTTCCGCTCCCCTAACAGTAGTTGAACGGACAGAATTTTATTCAGGAATTGCCCCGTAATTAGGAGTGTGAAGGGCATGTGACGCCGTCCACGCTGAATAAATCAATCGTATTTGCAACAACTGATAATCAAACCCTCCTAACGGAGATTAGATTAGCCGCGGCATCAACACGAGCGCGAATGAACTCTCCGGCGAGGAGCACGAGTGATCAGCCTTGGAACTCCCATCGTACCGGCGTCCATACTGCTCGGGAGATCGTATACCCAACAACGACGATACGCGACGATTCTTCATCGACCCCTAGGGGGTTCAGGGTGAATTACGGGTTGACGAAAACACCGAAGTATGTATGGCCTGTAGCACCGCTGAGTGCCCCGTATGGGGCATG # Right flank : GCACAGTGTGTCGATGGGCGACGCTGGCTGGAGTGTGGACGCGCTACCTACTGCTATCGGATGTTGGAGTTGTCGCCAACCACGATTTGGGAGAGACAACGTGCTGAGGTGTCTGCGACGACGCACTCAACAGGTCGTTTCGTGTGGTTGGCGATGGTCAAGATACTGCTTTGAGGTTACCTAAGGATTTTGATTCGGCAGACCTCTCGTCGGTATTGAATGTGCTCTTGTGCTTCTGCTATCGTGGCCGGTCTTCTAGTTCATCGCTGTCGACACCGGTTTTATAGTAGTCGTCTTCGATTCGGGAATCGCCTCAGAGTCAAGCTCTGAGGCGCTCGGCCTGCGACGCTGATGACTAGACCTTTTCTCAAATTTTAGAATGACGATGTGACGATACGCCAAAACAAATAACGCACACACAATCCAGGGTTGATTCGTCCTATGACAGACCCTAGTGAAGAACACGACAGTCAATCCAACACCGGCTACATCGAACGCTT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 5 51486-57941 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMN01000004.1 Halobacterium hubeiense strain JI20-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 51486 30 100.0 37 .............................. AGACTGACGAAGTCCAGTGGGGGAGCGAGACCGGCGG 51553 30 100.0 34 .............................. TCCCGCGGGACGCCAGCCCGGTCGGCGACCCCCT 51617 30 100.0 34 .............................. AGCGAGCAGGTCCCTGCGGACAAGGTCCGCTGGT 51681 30 100.0 37 .............................. CGTGTCAATCAAGGTTTGTGGGCCGCCCGCCGGCCCC 51748 30 100.0 36 .............................. CTTGAGTCGGAGGGTGAGGAGTTTGAGACGGTGACG 51814 30 100.0 35 .............................. TCGTGCGGTTGGTCGCCGCCCGAACTCGTCGTCTC 51879 30 100.0 36 .............................. TTGGCCCGTGCGTGTACGGGGTCGGGGAGTTTCACG 51945 30 100.0 37 .............................. GGCACGAGTGATATTGATGCGATTGCTGACGACCTTG 52012 30 100.0 37 .............................. GTACAGGAACGACTCGGTGAGGATTTCAATACCGCGC 52079 30 100.0 36 .............................. ATCGACATCGGCTCGAAGGATACGTCGCCGCCGCGG 52145 30 100.0 36 .............................. CATCGGTCGGGTTGTCTGCGCCACGCCCCGGCCCGA 52211 30 100.0 34 .............................. TTCTTTCGCCACTTCGAGGAGGTAGTTCGCGATA 52275 30 100.0 35 .............................. CCACACTCACACACCCACGGGCCACTACTGCCGTA 52340 30 100.0 37 .............................. GGCGAATGGTCCTGTATCAATCCCCACACCATGATAC 52407 30 100.0 39 .............................. TCCTCAAGAGCGATACGGTCGCCAGCGAACCGGTATGGC 52476 30 100.0 35 .............................. CACAAGCGCCGCCGTGACACTCAGAACGAGCACGT 52541 30 100.0 34 .............................. CTCGCTGATGCGGTGGAAGGAACTCTGGCCGGCG 52605 30 100.0 37 .............................. GAGCCGGGGAACTCCGAGACCCTCGCGGAGTTGATGG 52672 30 100.0 36 .............................. AGGACGTACTGACGACGAACCTGCGCACCGTCGAGG 52738 30 100.0 35 .............................. GTCGTGGTTGCGGACCTCATCGGCGCTGATGTCGA 52803 30 100.0 35 .............................. GACTGGTCCGTGAATCAGAACGGCGTCCGCTCCCG 52868 30 100.0 34 .............................. CCGGACAGAGAGCACTCCCCACCGAGGCTCAACA 52932 30 100.0 36 .............................. GGTCCTCGTCGAAGAACACCGCGAACACGGTCACGT 52998 30 100.0 36 .............................. ATCTCGCGGCGGAGATAGCCGACCGACGCGAAGATG 53064 30 100.0 35 .............................. GTCGAGGTCCGTCTCGGTCGCCGCGACGACGGCGC 53129 30 100.0 35 .............................. ATGGTGTGAGGAGAACGGCGGCTATCATCCGATGG 53194 30 100.0 33 .............................. CAGTACCGCGGCAGCGTTGAGATGAATGGCGGG 53257 30 100.0 34 .............................. GCGGCCGCCGCACCGAACTCAAGCACGGCGCCCG 53321 30 100.0 36 .............................. AACATTCGGCTGCCGAACGCTCGCGAGCTCGCCCGC 53387 30 100.0 35 .............................. GGCTGGTGGCAGCGCAGCGGCGAAATCGACCAGAA 53452 30 100.0 36 .............................. GATCTGCCACATCGACGAGGCCTGGGTCGACTGGGA 53518 30 100.0 36 .............................. ACGAGACCATCGAGGTCCAGTCGACTCCAGATACCG 53584 30 100.0 37 .............................. TCAATCACGAGCTCGTCGTCGAGACCGACGCCCTCCG 53651 30 100.0 35 .............................. GAACTACTTGGCGCGAGTGAGGTGGACCGATGAGT 53716 30 100.0 37 .............................. TCTGCCTGCTCCCGCCAGTCAGTATATTCATGCGGCT 53783 30 100.0 33 .............................. CGCTAGGTTCTGCTCGTACCTAGTCCCCGGCAT 53846 30 100.0 36 .............................. GGCGGCCGCCGAACTGGTAGTCGGGCGCGCTCGGTT 53912 30 100.0 35 .............................. CGCGTCCACGGACAGCTCTTGGTCGTCGTCGTAAT 53977 30 100.0 34 .............................. GAGTGCGTCGCGGATGGCGTCCACGTGACTGCGG 54041 30 100.0 34 .............................. CACTCAAGCAGGCGGCCGACGCCACCATGCTTCG 54105 30 100.0 36 .............................. CGTCCGCCGGACGGCTGGCGCATCAAAGACGTCTGC 54171 30 100.0 35 .............................. GCGTTGCCCGACCTGCCTCGGTCCGACCGACGAGC 54236 30 100.0 36 .............................. TTCGGGCCGGCGTACGTGAACGCGCCGGAACCGCCG 54302 30 100.0 35 .............................. CGACCATCCTCAACGGGGTTGTCCGACTCGCCGGA 54367 30 100.0 36 .............................. TTATGGTGAACATGGTTGCCCGCCACCGCGTCAACA 54433 30 100.0 36 .............................. TGCGGGAACTCTAGCGCGTCGTTCAGGCTAGTTACG 54499 30 100.0 37 .............................. AATAACAACAGGCAAACGAAGATCCGAGAATATAACA 54566 30 100.0 35 .............................. TTCAAGAGAATAACGTTACGTATGCCGCATATACG 54631 30 100.0 34 .............................. TGGATAGCCGCAGTCACGCCATTAGTGGTTGCTC 54695 30 100.0 34 .............................. CGCGTAGACGTATCCGAAGACGTGGTTGCGGAGT 54759 30 100.0 33 .............................. AGGGCGTCGGCGAACTCACCGCCGTTGAACTGG 54822 30 100.0 36 .............................. GTTGAGGGTTTGGCAGTGCTGGCAGTGCTGGTAGTC 54888 30 100.0 38 .............................. TCGACGAGCTCGTGCTGGGTGGTCATCGTGAGTCGCTC 54956 30 100.0 35 .............................. GCCCTGGTAGCAGCGGTCAGCTACCCAGCCCGGCC 55021 30 100.0 35 .............................. AGGTTGTGGTTGAGGGGGAACTGCCTGAGGAGTCG 55086 30 100.0 35 .............................. AACGTCGCCTTACAGTCACGGCAAACTACGGTGCC 55151 30 100.0 36 .............................. ACGCTAAACTGCGAGCAGTGTGGCGGCCAAGTCCCC 55217 30 100.0 35 .............................. GAGGGTTGCGGTGTGGCCGTCGCAGTCGGTGACGC 55282 30 100.0 35 .............................. TCGCGGTCCCCCGACGCGACCCCCGACAGGAACGA 55347 30 100.0 38 .............................. AGCTGTGACATCGTCATCGATCGCGCGGGCGGGACCGA 55415 30 100.0 33 .............................. CCAGTCGCCTTCGCCGGAGCCGGTGACGACGGT 55478 30 100.0 37 .............................. TCCCGCAAGAGTCCGACGTCGCGAGCGGCATGACCGA 55545 30 100.0 37 .............................. CTGTTCCTCGCACTCGCGTCGCTGCTCGCGATGATGG 55612 30 100.0 36 .............................. CGCGAACATCGTCTCCGGGCAGGCCGACGAACCGGT 55678 30 100.0 36 .............................. GATAGCTCGCCGTCGACGAACGTCAGGTCATCCTGT 55744 30 100.0 34 .............................. GACCTGCGCAGCGCCGCCCGTATCTCCTGACGAG 55808 30 100.0 34 .............................. GCTGTCCGGAGTGCGGTACGGAGAACGGCTACGT 55872 30 100.0 37 .............................. GCGGTACCGACCCATCGTGAGGTACGGCGCGAGCGCG 55939 30 100.0 35 .............................. CAGTATGGCGAAGAAGACGACGCGCGACCAGCTCT 56004 30 100.0 34 .............................. TCGCGTACGTCTACTCACACGCCGGCATCCGCGA 56068 30 100.0 35 .............................. CTCGCGGTCCAGAAGGCTCAGGGTGACGTCCCCGA 56133 30 100.0 34 .............................. AGAAAGAGAGACGAGGGAGAGAGACGGTCTACGT 56197 30 100.0 35 .............................. GGTCGGCGTCGTCGACGACGTCGAGAGCGGGACCG 56262 30 100.0 36 .............................. GGGGTGAGGTCGCGGAGGTCGACGCGCTCAGTCACC 56328 30 100.0 39 .............................. GCGTGCAAGAACTTGAATGGGTGTTAGACGAATGACCGA 56397 30 100.0 36 .............................. CTGGGCGGCTACATCATTACGGACGGAGACATCGTC 56463 30 100.0 37 .............................. GGCGAGGGGCAGTGGACGATTAAGCCCGGGCTTCTCG 56530 30 100.0 35 .............................. GTCGTGAGTTCGTCCGTGGCGAGCGTCGTGCCGTT 56595 30 100.0 36 .............................. CTTGTACGCCTGGACGAGGGCGAGGTAGTCGCCGAG 56661 30 100.0 36 .............................. TGGCAGAGAGAGAAGAACTTACTAGCCGCTTCCTCG 56727 30 100.0 36 .............................. GACGTTCCCGGCGAGCCGGCGGCGGTCCCCGGCCGC 56793 30 100.0 36 .............................. GGAGACACGTCATACTCGTCGTTCGGGAGGAACGCC 56859 30 100.0 37 .............................. GGCTTGTTCGAGTCAGCACGGAGACGGCGCTTACTGG 56926 30 100.0 37 .............................. AACACGGACGCCGCGGGTAGTGGTTCGACGGGCTACC 56993 30 100.0 35 .............................. GGTACGCGTGTTCGTGCGCGGAGGCGGGGAGTGGG 57058 30 100.0 35 .............................. CCGCAGTGGGATGAGGACGTCGACGGCGTCACGCT 57123 30 100.0 36 .............................. AGACCGACGAAGTCCAGTGGGGCTCGGAGACCGGCG 57189 30 100.0 37 .............................. GCCGCAATCGTCGTATTTGACGCCGCCGAAGCCGGGT 57256 30 100.0 34 .............................. TGCCGTCACGCGCCCCGAGAGTGGCATTCTTAGA 57320 30 100.0 36 .............................. GTACCCCTTTGATGGGATTGTCGTGGAAGCCCCGGA 57386 30 100.0 34 .............................. TAGTCGTGCGTCGCCACCGTCGTTTACGTATAAG 57450 30 100.0 34 .............................. AAAGCCAGCGTGCTTCGGCGATGCAGGCCGCCGG 57514 30 100.0 37 .............................. AAGGGAGTCGTGGGGCAACGATTGACCCGGGAATGCG 57581 30 100.0 36 .............................. CCGAACGGCAGGGGGCCGGTGTGTCGCTCGTGTGAA 57647 30 100.0 35 .............................. CCCGCACGCAGGGCAGTCGTGGATGATTGAGTGCG 57712 30 100.0 37 .............................. CGCGACCCGCGCCCAGAGCTCGTCGTCGCTGGGGTCG 57779 30 100.0 36 .............................. TATCCAGTCGATGTGTTCGATGAATCGCGGGTCTAC 57845 30 100.0 37 .............................. GCGGAACTCACGGGTGAATCCCTATGAGTGGCGTTGA 57912 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 99 30 100.0 36 GTTTCAGACGTACCCTCGTGGGATTGAAGC # Left flank : ACACTCGAGCGAACAGTCGAGCACCCGACGCTGAACCGGAAGGTGAGCTATCAGTATCTGCTTCGCTTGGAGGTATACAAGCTCAAAAAGCACTTGTTAACCGGCGAATCCTATGATTCGTTCAAGCGGTGGTGGTAGATGTACGTCATCGTCGTCTACGACATGGAGGCTGACAGGACCCACCTGATGCTGAAGCTCTGTCGCCGATACCTTGTTCACGTCCAGAACTCAGTACTGGAAGGGGAAATCTCGGAGGGAGATCTAGCGACACTGAAGGGGGAAATTGAAGATCTCCTTCAGAAGGGAGAATCAGTCATGGTCTACGAACTCTCTTCGGACCGGCTATTGAACCGTACCGTGTACGGGGACGACCCGACCGAGGATAGTCGGTTCCTCTAGCTGATGTCGACCCCCCGGGGGTTTTGGGGGGATTGCGGGTCGACGGAAATGATGAAGTGTATACCACTGGTAGAGGTGATATGGTGGGCAAAATCACCATG # Right flank : CAGACCATCGGTTATGCAGCTCATGCTACAGATATGTGTTTCAGACGTACCCTCGTGGGATTGAAGCNNNNNNNNNNCACCGGAAAGGGCGGATTCGTTGATGATGAGTGATGTTTCAGACGTACCCTCGTGGGATTGAAGCGGCGCAAGCCGTAAGGACGACGGTGAGACGAGTTTGTTTCAGACGTACCCTCGTGGGATTGAAGCGGATCGCAGCCAGCCGCTGCACACGAATGGCATAGCGTTTCAGACGTACCCTCGTGGGATTGAAGCATGCGAGAGCACGCCGTCTCGGCCGTACCAGCGGGTTTCAGACGTACCCTCGTGGGATTGAAGCCCGGGACGGTTGGCGTGATGAGCATCACGATTTTCGTTTCAGACGTACCCTCGTGGGATTGAAGCCGCCGGAGGTCGTCGCGGTTCGCGTGAATGCGTGTTTCAGACGTACCCTCGTGGGATTGAAGCAGGGAGAGGAGTCGCNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 59042-59921 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMN01000004.1 Halobacterium hubeiense strain JI20-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 59042 30 100.0 35 .............................. CCCATGTCCAACGTGCGGAGCTACGAGTCGCTGGA 59107 30 100.0 37 .............................. TTGGAGGGTGTGCCACGCTGGAAGGTTACGGTCTGGG 59174 30 100.0 34 .............................. TCCCGTTGTCCGTGTCAACCTCCCGAGTAATCTC 59238 30 100.0 36 .............................. GAGAACGAAAACCGGGCGGTGATGACTGGCGTCGAC 59304 30 100.0 35 .............................. GTCGAAGAGGTCTTGCTGGTCGACCTCCGACTGGT 59369 30 100.0 35 .............................. TCGATTTGTGACCCGGCCTGTGGGAGCGGCCAGTT 59434 30 100.0 35 .............................. GCGTCGGCCAGCTCGCCGAGCGCGTCGATAGTCGT 59499 30 100.0 37 .............................. GACGTAGAGGCGGCGGAGCGTCGTCTCGTTTTGGTAG 59566 30 100.0 36 .............................. GTCGACATTCGATGGTGAACCATCGGTCGGCGCCGG 59632 30 100.0 35 .............................. GCATGGCGAAAATGGCGTTGTAGAGGAGGTCTTCG 59697 30 100.0 35 .............................. GCGTCACCGACCGGGATTACATCACCAAGAACCCG 59762 30 100.0 36 .............................. GCCCGGAATTTCGCCGGGGCGGAATAGGGCGGTCCA 59828 30 100.0 34 .............................. GTGGGGTCGGACTGGAACGCCCACCATCCGGTGC 59892 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 100.0 35 GTTTCAGACGTACCCTCGTGGGATTGAAGC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAACATCACCGAAGTACGTCTTGTAGGGTTCGAGTTTCAGACGTACCCTCGTGGGATTGAAGCGGGCACGCCCCCATCGACCTTCGGTCGTGCCGTGCCCGTCGTTTCAGACGTACCCTCGTGGGATTGAAGCGACATGCCATTCGACCGGGTCTAACACGACGCTGTGTTTCAGACGTACCCTCGTGGGATTGAAGCAGCGAATGGTACGACGGTGACGCGAAGCCGCTTCGGTTTCAGACGTACCCTCGTGGGATTGAAGCGAATCGACGGGCGCTTCGGCGGTGGCGTTTCCGGGGGTTTCAGACGTACCCTCGTGGGATTGAAGCACAACCAAGAGCCAGAANNNNNNNNNNGCCGACGAAGAGCAG # Right flank : CAGCGACGGCGGTGACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTCCAGCCGCCCCGAGTGCATGGGTCCGCGGGTTTCAGACGTACCCTCGTGGGATTGAAGCACTCGGCAAACAACGCCGATTATGACTATGACGTGTTTCAGACGTACCCTCGTGGGATTGAAGCGACTTTCTCGGGCGGATGGGGCTCGGGACCGGCGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCGGTCATCGCCGGCCTCCTCCTCGTCACCACCGCGTTTCAGACGTACCCTCGTGGGATTGAAGCGTTGTCTGCGTGATCGGTGAAGGTGAAGGTGAGTGCGTTTCAGACGTACTCTCGTGGGATTGAAGCTTGTGGACGTAGCGCTGGCCGAGCAGGCTGGCGAAGGTTTCAGACGTACCCTCGTGGGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 7 60071-60755 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMN01000004.1 Halobacterium hubeiense strain JI20-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 60071 30 100.0 34 .............................. ACTCGGCAAACAACGCCGATTATGACTATGACGT 60135 30 100.0 34 .............................. GACTTTCTCGGGCGGATGGGGCTCGGGACCGGCG 60199 30 100.0 35 .............................. GCGGTCATCGCCGGCCTCCTCCTCGTCACCACCGC 60264 30 100.0 36 .............................. GTTGTCTGCGTGATCGGTGAAGGTGAAGGTGAGTGC 60330 30 96.7 36 .............T................ TTGTGGACGTAGCGCTGGCCGAGCAGGCTGGCGAAG 60396 30 100.0 35 .............................. TTCCAGGTCGTCGACCGGACCACGAGACAGTAGAC 60461 30 100.0 37 .............................. AGCCTGGAGCGCGGCCTGCCGGAGGATGGCGATAGCA 60528 30 100.0 37 .............................. GGGCGATATTGGTCCGTTATTGGTTGATTTTCAGCTG 60595 30 100.0 35 .............................. GGCGGGCTGACGGAGAGTATCCTCGCGACGCTGTT 60660 30 86.7 36 ................T...C.G......G CACGAGCATCCTGCGTGCCCTCGGGGACCTGGCCGT 60726 30 76.7 0 ...A....A.A..G..A...C.G....... | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 96.4 36 GTTTCAGACGTACCCTCGTGGGATTGAAGC # Left flank : AGACGTACCCTCGTGGGATTGAAGCGTCGACATTCGATGGTGAACCATCGGTCGGCGCCGGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCATGGCGAAAATGGCGTTGTAGAGGAGGTCTTCGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCGTCACCGACCGGGATTACATCACCAAGAACCCGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCCCGGAATTTCGCCGGGGCGGAATAGGGCGGTCCAGTTTCAGACGTACCCTCGTGGGATTGAAGCGTGGGGTCGGACTGGAACGCCCACCATCCGGTGCGTTTCAGACGTACCCTCGTGGGATTGAAGCAGCGACGGCGGTGACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTCCAGCCGCCCCGAGTGCATGGGTCCGCGG # Right flank : CAGAGATATGGGGAGCCTAGAGAACAGCGGAAGTGATGGGGTTGCTAAAATCAGAGTTGTTTATATGCCATAGTTTCAGAGGAAACAACGGAGGTGGGTGGTCGGTGGGTTTATTGTTCCCTCTGTTCCATGTGGGCCTATATGGCCGACTTCACATTTGAACAAGACACCCAAATCTTCCGGGACCGGGACGCCCTCACGGAAGACTACACCCCAAACACACTCGTCGGCCGCGACGACGAACTGGAAGAATTCCACGCAGCACTCCAACCAGTCATCAACGACGAAAACCCCTCCAACATCTTCCTCTACGGCAAAAGCGGCGTCGGAAAAACAGCCGCCACACGCTATCTACTCACCCAACTCCAAGACGACGTCCAAGAAGTCACCGGCGTTAGCGTCACCGTCGTCGAAGTGAACTGCGACGGTCTCAACACCAGCTATCAGACCGCCATCGAGATCGTCAACCAGCTCCGCCCACATGAAGACCAAATCGCTTC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //