Array 1 286-493 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLKZ01000014.1 Pseudomonas aeruginosa strain WH-SGI-V-07055 WH-SGI-V-07055_contig20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 286 28 96.4 32 A........................... TCACTAGCACGTCGGGCAGGTCCTAGACAGTA 346 28 100.0 32 ............................ ACTCCCCGCAGGACGCGGCGTGCGAAGGGTTA 406 28 100.0 32 ............................ AGCAGAAAGAACGCACCGAGTGGCATCGCGTG 466 28 96.4 0 .....................G...... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCTTCCAGCTCCTGGATCTTTTGCTGCTCAGGCGTCAACGCCTTGCTCTTCGGGGTCACACCCTGGCGCTCCGCCTCGAGCTGCTTCACCCAACGGCGCAAGGCCGAGTCCACCACCCCCAGCGAACGGCAGGCGTCGATATGGCTGTAGCCTTGGTCCAGCACCAAGGCGGCAGCCTCTCGTTTGAACTCGGCGGAAAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGTGAGGATTCTCGCCTAAATCGGTGTCCGGGATCAGTAGACCACTACA # Right flank : AACGAAGGCTTCTCGCCAAGACGATGAGAAGCCCAAGAAAAACGGCGCTTCCCTTGCTCGAGGAAGCGCCGTTTTACTTAACTGACGGGCATTAGGCGAAAGCCGGCCTTCTGGTTTGCCTGTCGTCCGTGCGTCAGCGCACCACGTGCAGGAAGTGCATGTGCCGCTCGTACTGGTCGAGGATGTCGCCGATTACGCCGTCGCGGCTCCAGCCCATGATGTCGTAGTCCTGGCCGCCCTCCTGCAGGTGGACCTCGGCGCGGAAGTACTTGCGCGCCTCGCTGCTGTCCTCGGTATCGCGCATCACGAAGCTCGGCGTGGTGAAGGCGCGCGGACGGACCTCGTAGATGAAGTCGACCTCGCCACCGTGGCTGACTTCCAGGCGCACCCGGCCGTCCTCGCCATCCTGCACCTGGACTTCGTAGCCCTGCTTGCGCAGTTCGCTGGCGACGTCTTCGCAGGCCGGTCGCGCCACTTCGGAAATGAAGCGGTTGACGTGG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25655-26042 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLKZ01000022.1 Pseudomonas aeruginosa strain WH-SGI-V-07055 WH-SGI-V-07055_contig28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25655 28 100.0 32 ............................ TGGGAGACTGCTGTACATCCCTTCAAACGCCG 25715 28 100.0 32 ............................ GGGGAGGGTTGCGCCAGGGCGGCGCGGGCTTG 25775 28 100.0 32 ............................ CGAGTGGTGGCGTTGCGAGGGCGGCCCACGTC 25835 28 100.0 32 ............................ AGGAAGTCGGGGAATTTCGCCCAGCTGTCGAT 25895 28 100.0 32 ............................ CCGGAGGGGTGGGGGTGCTGTAACACCCCCAC 25955 28 100.0 32 ............................ TCTCCACCCCAGCTATTGCCGGGGAGGGCATG 26015 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCGCTTCCCGCACAACGCCACGCTGTACCTCGACACTCAGGCACCGCCCGGCCAGTTGTTCGAGAGCGCGAAAGCGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACTTGCCTGCTCGACGAGAACGAAGAACCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGACGCGGCCCACCCACGCCAGTAGCGCCCGTCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGAGGTGATCCCTTCGAGGCCCATTCGCGCGCAAACGGCGAGGTCCGCCGCCCGTCCCGATCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTGGGACGGTTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : ATCGCGAGCGATATAAATCCATAGGGCACCGGCCTGCGGAGGTCTGGCAGGCACGAAGTCATGCTTGGCCTCCAGACGGTAGGGCGGCGAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGTAGGGGGACGAGCGGCAGGAGGCCGCGAGAGCCGCCCCGGTCCACGAAGGACCGTGGCGGCGGGCCTCCGGGAGCAACGATGCAGCGAGGGAACCCCAGTCGCGTAGCGGCTGGGGCCGGATGCAGGGGCAAGCGCTTTGGTTACTTTCTCGCGACTGAGAAAGTGACTCGCCTGGGAAGGCGAAACAAGAGGTCGAGGCAGGCACGACAAGCAGCTAGACCGCCCAGCCAGAAGCCCGCTCAAGCTTTAAGCGACATCCTTCCCCAACTGTTAACTGCCGTGTAGGCAGCTAAGAAAACGGTCCCTTGCTCGCGCCGACCAGACGTCCCTTTCACTGCCGCATAGGCAGCCTGACTTCCCTCGGACTCGCAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21815-22981 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLKZ01000026.1 Pseudomonas aeruginosa strain WH-SGI-V-07055 WH-SGI-V-07055_contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21815 28 100.0 32 ............................ ATGCAGCCACCCCCGCATTGGGACGTATCACT 21875 28 100.0 32 ............................ TTCACGGCTCAGGAACTCCTGTTTCAGCTCCT 21935 28 100.0 32 ............................ TCTGAGGTCGCTATGCGCGTGTTAACTTTGTT 21995 28 100.0 32 ............................ TTCAAGTGGAGTCACGCATCTCGAGGACTGCG 22055 28 100.0 32 ............................ ACGAACTTGATGGTCAGGGCGCCGCGCGGGTC 22115 28 100.0 32 ............................ TGGCCGCCCCGCCTGGCCGGCGCCGGCATCAA 22175 28 100.0 32 ............................ GCTGGCGCTTTGTTTCCGTGCCGTCGTTATAC 22235 28 100.0 32 ............................ GAAGCCCAGGTCCTCGGCGGCCACACCGCTGT 22295 28 100.0 32 ............................ GCAAGACGCTGGGCAATGGGTACATCGTGCAT 22355 28 100.0 32 ............................ AGCACCAGCTTGCCGTTCGCCGGCTTCACCAC 22415 28 100.0 32 ............................ AGGAACTTGGCGACCGCAGCGGATCGGCTCAT 22475 28 100.0 32 ............................ TGAAAGAAGCGCTTGGGCTCAAGAATCCTGTC 22535 28 100.0 32 ............................ AAACGACGCGCCCTAGCACGAGAGCGCTTAAG 22595 28 100.0 32 ............................ GTCGAGCGGGCGGTCGAGCGGCTGCGCAGCAA 22655 28 100.0 32 ............................ GGAATGCAGTTGCCCGAGCGGCGGCGCCTCCC 22715 28 100.0 32 ............................ TGGAAATCCTCCGCCTCCGGCGCCACCACAAT 22775 28 100.0 32 ............................ ATCGAGCGGACATATCTAGAGGCAGTGAAGAG 22835 28 100.0 32 ............................ ATAGACTTGCCGATCTCGGCGGCTGCGCGGAC 22895 28 100.0 32 ............................ CGTTGATCTAATGCGGATGCGGGTGGAAACAG 22955 27 78.6 0 ...........CGC.......C..-..G | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.9 32 GTGCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACCGCTTTCCGCGCAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCTAGTTGTTCGAGAGCGCGAAAGCGTGCCTGAAGTCGGCGATCAACGTCCTTGCCCTGACCTGCCTGCTCGACGAGAACGAAGAGCCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCACACCCACGCCAGTAGCGCCGTCCCAGACGCGACGCCCCCGGCCAAGCCGGGGGCTTTGATATGTGATCCATACGAGGTCCATTCGCGCGCGAACGGCGAGGTTCATCGCCCGTATCGGCCGTCGCGAAATGGCCTCCAATGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTGACGCCCTTTAAAATCAACAACTTACAAACCATCGAAAAAAGAGGGTCTCAGACAGAGAAAAGCCTGTATTTCTTTTTCCTTCAATTGGTTATAGGTTTTCGGGGCTA # Right flank : GCTTTCCCGCCCTACCCAATACCCAGCCAATATCAGGAAAGTCCTACCTCCTCCACCCTGCCCGCCCTGCTACCCTCACCCGGATGCAGCAATGCGCCACCACCTTGAAGCCCATGCCTCTCGTACAGACGAAAGCGGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGGTGCCCTGGTGCAGTATTCGACAGAACCGATAGGGACGGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGCACTGAAGACGATCCTTCATTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGCGTCGAGTACGTCACCGACGAAGGCCGGCACTCGCACTACTGGAACATCCCCATCGCCAATACCACCAGCCTTCTGCTGGGCACCGGCACCTCCATCACCCAGGCGGCCATGCGCGAACTGGCCAGGGCTGGGGTACTGGTGGGTTTCTGCGGTGGCGGCGGAACGCCGCTGTTCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 32269-31521 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLKZ01000026.1 Pseudomonas aeruginosa strain WH-SGI-V-07055 WH-SGI-V-07055_contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32268 28 100.0 32 ............................ AGTACCCGTTCTCGCCGGCCTTCGCTTCGGAC 32208 28 100.0 32 ............................ AAGTAGATCAGTCGATTGGCGAAATCCACTCT 32148 28 100.0 32 ............................ AGGGCGTGGCCAAGACCAAGGGCCACAAAGCC 32088 28 100.0 32 ............................ CGTAAAGAGTGCCCCCGGCTGGCCGCCGCTTG 32028 28 100.0 32 ............................ GTCGGCAGCGATCTTCGCCTGAAGGTCAGCGG 31968 28 100.0 32 ............................ GCGACGTTGGCCAGCGCGAAGGACCACACCAA 31908 28 100.0 32 ............................ ACCGACGCTCCGGCCTCGGCCTGGGTGGCGGG 31848 28 100.0 32 ............................ GTCCGTGGCCCATATGGGCACCTCTACCGCCG 31788 28 100.0 32 ............................ CTCGGTCGGTGCGGTTGCTGTTCTGGATCGTC 31728 28 100.0 32 ............................ ATCCAGATGGCGCGCTTCCATGCCTTCACAAC 31668 28 100.0 32 ............................ TGGCTTTCCTGGAAGACATTCTTCAGTTAATC 31608 28 100.0 32 ............................ ATCGAGGCACTGGAAGCTGAAGAGTGGCTGGA 31548 28 92.9 0 ..G.....................A... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGGGCGCGCAACAACCGCTGCTGTCGGAAGAAATAGTGCGGGGCTAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGGCGGCAGGGAGACAGGCCGCTCGTGGGTATGAGGCCAGCAGGCTGTGGCCTGCCGGCGAGCGAGTCGCCGGCGGGAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGACTTGTACGAAGAGTCTGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGATTTCACTGCCACGTAGGTCGTAAAGCAGCCCTGAAGTATTGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCGTTCCCTGGGACTTCGTTGCGGGCATGCCGTTGAGGCGCTGACGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACCCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //