Array 1 53768-52838 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMPK01000052.1 Hafnia alvei ATCC 13337 GHAL.assembly.052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53767 28 100.0 32 ............................ TGAATGCCGGCGGCGATAAAACGGGTTGCCGC 53707 28 100.0 33 ............................ TTGGTTCACAGGCCGCGAACTAGCGATATCACA 53646 28 100.0 32 ............................ AACTCCATGGACAATCAGCTTAAAAAGCTAAA 53586 28 100.0 32 ............................ AGTTTATGACGCAACAGCAACAGCGTGGTTTG 53526 28 100.0 32 ............................ CATTCGGGGTAGAGCCGTTGCTGGCAGGTCAA 53466 28 100.0 32 ............................ GTATGCAAGTCCTTTGCTATTCCCAGTAAACG 53406 28 100.0 32 ............................ AACTGGTTTGCTGACACAGTCCATGTCGGGGT 53346 28 100.0 32 ............................ TATCACAACGTTCTATACGCCATGCTTATTCA 53286 28 100.0 32 ............................ TTCTCATCACTGCCCTCGTCAGCAGGATCAAA 53226 28 100.0 32 ............................ ACGAGTTTAGCGCAGCGGATACGCTAGCAGAA 53166 28 100.0 32 ............................ TTATGAGCAAGTGTACTTGCTAAATCAGCAGC 53106 28 100.0 32 ............................ TCATTTATACGCCAGCTGATGGCGATATTTTT 53046 28 100.0 32 ............................ TGTATGCACTTCTGAAAATGCCCGTAGCAAGC 52986 28 100.0 32 ............................ CAATATTCCATGGGCTTGTGTTGGCGTCCCAT 52926 28 100.0 32 ............................ ATCAGGTAACACCGGTTCCATGCTATTACCCC 52866 28 92.9 0 .....................A..A... | T [52846] ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCGGTGCCGTAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGAAGCGAATGGCCGATGGTAAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCTAGACCTGCTAAGGCCAGCAACCGTATCGATCCCGCCTAAGCGCTTTGGCTCCCCGCTGATAAAAATAGGCGGGGAGGCCATTAGCAATCGCCGCTCTTTATTTGGCATATGCAACAGACATATGTTTGCCTGTTCGCAGAGCGCTAGCAATGCAGAGATTAGATGAGCTGGAAGCGTTAATCTGCCCCCAACTTTCCTGTGAGATCCGAACGCCACTCTCTAGCGATTCCCCTAAATACGATAAGCTTCCACTAACCTTTTTTTTCGCCTATTTATAACCCTTTAATTTTATGTGAGAGTTTATCACGAAGATAAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTCGAAGCTTTATACGAATATTCTACA # Right flank : CAAAACGGCATTTCTGCATACTTTTCTATTAATACCCATCATCGTAAACGCCTCCGATCAAATAAAAGCAAACGCTTTCCTAAATTATAAATTCCTATGAAAACATAATCATGCTAACTATATTTTTCGTGCGATTTTGTGATGGGTTTTTCATTTCGTTAACAGTATTTTTTACCAAAACAGATAGAAACCCTTAAAAACAAAGAAAACATTAAAACTATTAATTATTAACCTATTAATTAATATTGTTTTAAAACAAATGATTAGCTAATTTCTTTGATCGAGATTCAGGGAGTTATTGTATTTCTTATGTAAATTGAAAAATACGACAAAGTAATTAAAATGAAACAAAAATGGTTGTGGTAATAAAGAGAAAAGTATACATATAACCGCAGCAGCAGAAGTTCCTCCCATCGTGGTATTTCTGAAGAAAAAATGGGGTAGTGCCAGATTGATCGTTGTTTCGGTCGTTTTTACTTCGGTGTTACCGAAATGTAATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29643-30091 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMPK01000032.1 Hafnia alvei ATCC 13337 GHAL.assembly.032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29643 28 100.0 32 ............................ GTTTGCAGCACGCTCATTGCGCTGTCTACCGC 29703 28 100.0 32 ............................ AATACACGAGGTTCATATGGCAAAAGTAGCAG 29763 28 100.0 32 ............................ AGCCACAAATACGTGAACAGATTTACCCGGCA 29823 28 100.0 32 ............................ ATGTCCATCTACGGCGGCTTCGTAAAGTACAT 29883 28 100.0 33 ............................ CTACATCCGAGAGCGTGACTCAGCAGAGCCATG 29944 28 100.0 32 ............................ TTGCCGTCGAGCTGCATCCCCTCGCCTTGACT 30004 28 100.0 32 ............................ AATTCAAGTAACACGTGGAGATCAACCGACAT 30064 28 78.6 0 ....................A.A.TTCC | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATTTGATTGGGATACGCTTGGCCCCGTATTAGGCAAGGTGTATGAGGAGATCGACGAAGTGATGGATGAAGCGCAGCAGGCGGTGGTGGATGAGGAAAAGCTAGGCGAAGAAATTGGCGATCTGCTGTTTGCAACGGTGAATTTATCGCGTCACTTAGGCCATAAAGCTGAAAACGCCCTACAGGCAGCCAACCGCAAATTTGAACGTCGTTTCCGTGCAGTAGAAGATGCAGTGCGCGCCTCGGGCAAAACCATGGAAGAAGCCACGCTTGACGAAATGGAAGCGCATTGGCAGCAGGTGAAAAAGGCTGAAGGTAAATAGTCAAAATCGCGTTGGTTAAAGTGAAAAAGGCTGACGTGCTGCGTTAGCCTTTTTTTTCTGCCTACTAGTAACTGATTGATTTTAAACAGGCTGAGAAAAACGCGCAGAAAAAGGGTATTTTGAATTTATTGCGCGAAATCGCTTTATTTTCACTCAGCTAGTCATAAAATCCAGCA # Right flank : CTCGCCACTCTATTTTTTACCATCTGGTTGCAAAATTCCTCGTGTGCCTAGTAGAAACAGCAACGTCATTAGTGCCATAGCCAGTAGACCTGCTTGGCTAACACGGGCTCGAGATTGTTGGTAAAGCTTGGTGATAGTGGGTAAGTCTTGTTTGGTTGCTCCAGACTGCACTAACAGGCTGCTGAATCCTTGATCGCTGAGATAGGGAAACACGGTCATATTTTGTATGGTAATGCGGGTCTGAGGTGTGACGGTGATGTCTGCGATTCGGTGTTTCATGCTAAACGTAAGCGTAGTAAGCATGACCGTACTCACCAACGCTACACCAAGCGCTTGACCAATATCACGGGCGGCAGACTGAATTCCGCCTGACTGGCGAGCCTCTTTTTCCGGTAATGCACTGGTGACCAAATATGGCGCGTTGGCTGCAATCACTCCCATGCTGGAACCGATAAAACAAAGCCCGACAATAATCAATGATCTGTTAAAACTATGCACTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 23094-21204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMPK01000056.1 Hafnia alvei ATCC 13337 GHAL.assembly.056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23093 28 100.0 32 ............................ AGAATACACAACCAGCGTTTTAGATTCCCCCT 23033 28 100.0 32 ............................ CCGATGTACGGCTATCATTAGGCACTTTGACA 22973 28 100.0 32 ............................ GCCTTGCAACGGCAATCGACAAGCTACCCATT 22913 28 100.0 32 ............................ GGGATGATGTATTTTCAAAACATTGAAACCGA 22853 28 100.0 32 ............................ TGCGTAAGCGCTGAACCGTCGGCCATCAATGA 22793 28 100.0 32 ............................ ATTAGGCACGTCGTATGTAGAGTTAGGCATCA 22733 28 100.0 32 ............................ CATTCAAGAGCCCGCCGCGTGCGGGTTTTTTT 22673 28 100.0 33 ............................ GCTAAAAAAGCAATAATAATATGTTCCATTTAA 22612 28 100.0 32 ............................ TTCATTACTAGTAATCGGGTGATTCTTTCTGT 22552 28 100.0 33 ............................ GTGCGTTAGAAGGTAATCGGTACTGCCGACTAA 22491 28 100.0 32 ............................ TGCAATAATATATTTTTTAAACTCTGCAACGC 22431 28 100.0 32 ............................ CGCAGAATTCGCCTCCGCTGAATTTATCTAAT 22371 28 100.0 32 ............................ TCGCAACAAGGACTACAGATGACAGACGAACG 22311 28 100.0 32 ............................ GTCAGGGAAAAGAAAATCTTTGCCATAAATTG 22251 28 100.0 32 ............................ ATCCGGCGCAGCTTTGCGAAGCTTACATAACT 22191 28 100.0 32 ............................ TGAATCCATTAGGAATTTCTGAGTAGCCTTCA 22131 28 100.0 32 ............................ ACAAATACAACTGCGGCAGCATTTACGGCAAA 22071 28 100.0 32 ............................ TCACCAATGGTTGGATTGGACGGTGCTACACG 22011 28 100.0 32 ............................ TAGAATGCCTGCAATAAAATCTAATATCCTAA 21951 28 96.4 32 A........................... TACGGTTAGCGGGGATGGCTCCAGCGTTACTT 21891 28 100.0 32 ............................ AATCGCTGCCGCTCCACCTAATGTACTGATGG 21831 28 100.0 31 ............................ CATCGGATAGAGCCTTTTTCTTTTTCACTAT 21772 28 100.0 32 ............................ AAAGCGCACATGACATCAGTGTTAGTTAAAGC 21712 28 100.0 32 ............................ AACGAAGGCACGTTAACGATTTGGGGGCTCAC 21652 28 100.0 32 ............................ GCAAACTGTTCAACGCCGCGATTGTCTTTTAC 21592 28 100.0 33 ............................ TGCCAATCTAGAGGATGTGTGAGTGCGGTTGGT 21531 28 96.4 32 ...A........................ TGTCAAACCTACTCAGCCACCGGCTATCCCTA 21471 28 100.0 32 ............................ TTCAACAAAGACTTTGCTGCGATCCGATGACG 21411 28 100.0 32 ............................ GATACACTGGGGCACCGCTTGGTAATTCATAG 21351 28 100.0 32 ............................ AGCATTTGAGATTTAGCGAGAATGAGATTTGG 21291 28 100.0 32 ............................ ACTACACGCAACGGATCATATCAGGAGGAATC 21231 28 92.9 0 .....................C..C... | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACTGGCAAGGTGCGCAACCATAATCTTGGCGATAACGTCAGCGCATTGACCTTAGAGCACTATCCTGGGATGACAGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGTTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCCATGTATCCCGGCGATGAAATTGTATTCGTTGGCGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTCTGGAAACGAGAAGCCACCGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGTGACCAACAAGCGGCAAAACGCTGGTAAGTTCTTTCAACCCTTTTTTCTGCCCTCACGATAACTCATTGATTTTTCACTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : CTCACCATGGTTTGTGTTTAATTTTATTGGCTATGTATCAACCTTAAGCCGTTAAGCTGGTTATATTCCAAAATTAAGAATTACTGCATCGCTAAGTGTGATTTAAGTTAAATTTCCCTAATGTGTTGGGTGGTATTTTTGCATTGTCTCCAACGATGGAATAACGATGTGAACAGCAATGATTTCTCTCCCTCTGATCTGAAAACTATTCTGCATTCAAAACGCTCAAATATTTATTACCTCCAATATTGCCGAGTATTAGTTAACGGCGGTCGAGTGGAATATGTGACGGATGAAGGGCGCGAATCACTGTATTGGAATATTCCCATCGCGAATACCACCGTGGTTATGTTGGGCACCGGAACCTCGGTCACTCAGGCCGCAATGCGAGAGTTTGCCCGTGCAGGCGTATTGGTCGGTTTTTGCGGCGGAGGGGGAACGCCCTTATTTGCGGCAAATGAGGTTGAGGTAGATGTCTCGTGGTTAGCTCCGCAAAGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //