Array 1 904670-905125 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057104.1 Escherichia fergusonii strain RHB38-C01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 904670 29 100.0 32 ............................. CGAGGGAGATCAGAGAGCAGGCTATTACAGCA 904731 29 100.0 32 ............................. TACAGAAAAAAGAGGCATCGCATGTCGCCATT 904792 29 100.0 32 ............................. CACTCTCGCGCCGGTGGTGATATCGTCGCACT 904853 29 100.0 32 ............................. GCAGCAAAGGGAGCACATATGCATATGGCGCA 904914 29 100.0 32 ............................. AAAATAAAATTGATGGCGCTGTCGCTACAATT 904975 29 100.0 32 ............................. TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 905036 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 905097 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACACTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACTATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGTATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAGCATGAAATATATGAGCTGGTGAGTTATAAAGATTATCTATACTCAACAGACCATGAACCTATTGATTTTCAAGAGGGAGTATTACGATTTCAACAAATTAGAACAAAATACAGGCAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAAGAAATATTGTTTTTATGTTGGGGAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATATTTTTATTTTATTCTCGAAAATGCCTAATTTCATTAAATACGTTATCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGTCTCCCTCGATTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 913552-913824 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057104.1 Escherichia fergusonii strain RHB38-C01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 913552 29 100.0 32 ............................. CTTGTTTTTCCTTATTAATGACTTGCAGGTAA 913613 29 100.0 32 ............................. TGAAAATGGAGGTATGGGGAAAAGAAATTTAC 913674 29 100.0 32 ............................. ATGACGGGTTACGGGTACGATTACGAGCGCGA 913735 29 100.0 32 ............................. GGCGTTTCATGCTCATTGTTAATAACCCGCCA 913796 29 96.6 0 ..........................A.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTAGCGTGAGCGTGGGTTGGCTTCATAGCGAACAAGAGTGTATTGCGCATATCGAATCGGCGGTAAGTCAGGGGAAATGCATCGCCTGGATCCGGAATTCTGTCGATGATGCTATTAAAGTTTATCGTCAGTTACTTGCCCGCGGCGTCATTCCTGCTTCCAGCCTTTCACTTTTTCATAGCCGCTTTGCTTTTAGCGATCGCCAGCGAATTGAAACGGAGACGCTGGCACGCTTTGGTAAAGAAGACTGTTCACAGCGTGCCGGAAAAGTCCTCATTTGTACTCAAGTCCTGGAGCAGAGCGTTGACTGCGACCTGGACGAAATGATTTCCGACCTTGCCCCTGTTGATTTGCTGATCCAGCGAGCAGGGCGATTACAGCGACATATCCGCGATATTAATGGTCAGTTAAAGCGTGACGGTAAAGACGAGCGTCACCCTCCTGTATTGCTGATTCTAGCCCCCGTCTGGGACGACTCTCCGGGTGAAGAATGGTTTGG # Right flank : GTGGTCCTTCGGAACACAACGGAGCATATGATGAGCTCTTTAGCTGAACCTCCATTTGTAGAAATTCTTGAGTTGTGAGGTAAGTTCCTGCTTTGTCCGATTTATTTTACTAAAAAAGAAATAAAATGATTAGCCAGAAGTACAATCTCGTGTATAAATAATCTTGCATATTGATTATGTTGATGGAATTATTGTTTCCAACCGCAAATTAAATTAATTCTATAAGTAACATCAATATTTGACACGGTCGATAGTTTTCTCTTATTCAACATCTATATTCCCATTACGTGATATCGATCATGCTTTAGCCATATAGTACATCATATGTAACATTTCTGGTTGAATCCTGATTGATGTTAGGTAATTTTATTTATGTTTTAAATAGTTACTCTGGGAAACATAAATAAGGACAAGTTATATATTATGAAAGGTCTGGGTTTTGTAATTTTGATGATCGGGGTTGTAGGTGTTCTTTTTGCATTAAACATGCGAGTCAGTCT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1628295-1630064 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057104.1 Escherichia fergusonii strain RHB38-C01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1628295 28 100.0 32 ............................ GACGCCCAGCCCCGGTACGCCCGGTATAATTC 1628355 28 100.0 32 ............................ TGGAATATTCACTGATGTAACAATAGATTTTG 1628415 28 100.0 32 ............................ CTGCCTCAATATTAGCTGTGCTGGATAATGAA 1628475 28 100.0 32 ............................ GTCGAGCGTCTGCAATACAGCGTGTTCCAGGT 1628535 28 100.0 32 ............................ ATGTACGGATCCTCGCTATTAAATAACAACCC 1628595 28 100.0 32 ............................ AAACCGCTGCATATAGTGATTGTCTATCCGCG 1628655 28 100.0 32 ............................ TTAAACGTGCAGTTGAGATAAGCGAGAAACAG 1628715 28 100.0 33 ............................ CTGCGCCAGCCCCCATCAAATCAGCGTCATTAC 1628776 28 100.0 32 ............................ TCCGCGCTATGCTCTCCGTCAGCACAAAGCAT 1628836 28 100.0 32 ............................ TCTGGAATGCCATCTAACCCTGTCACTATCAC 1628896 28 100.0 32 ............................ ATTAAATGGACATTAAACATGCAGCAATATAT 1628956 28 100.0 32 ............................ TCGAGCACCTCAACAACCTGCGCGCGTTTATC 1629016 28 100.0 32 ............................ CGCTTATTGCCACTGTACTGAACGAAAAAAAC 1629076 28 100.0 32 ............................ GATCTCGTTTTGCCGCCGCTCCGGCTTTAGCA 1629136 28 100.0 32 ............................ GCGCAGATCTCCGCCCCTGGTCAACAATTCGC 1629196 28 100.0 32 ............................ GACGAGAGCTGGAGTAAGCGTCATGGTGGTGA 1629256 28 100.0 32 ............................ GAGAAGCAACCAGTTCTGGATTATTGGTAACT 1629316 28 100.0 32 ............................ CTTTGACCTTTTCCCCGGTATCAGCGGCTTCT 1629376 28 100.0 32 ............................ TTTGCGCCCCGCACGGAAACCGGCGATAGAGA 1629436 28 100.0 32 ............................ ATGAGGCGCGCGAGTCGCCCGCCGTTCTCCAT 1629496 28 100.0 32 ............................ GTTCCCGCTAAGATGTGGCCGGTCGGCGCAAT 1629556 28 100.0 32 ............................ GAACGCGAGCGCCTCGCGCCCCATGCCGTTGT 1629616 28 100.0 32 ............................ TCAGAATGGGCCAGCAATGACAGCCACAGAAG 1629676 28 100.0 32 ............................ CAACGCCACTGAGCCGAACTCAATATCATCCT 1629736 28 100.0 32 ............................ ATTTTGTTATATTCCATGCTCGCTGGCGTGGA 1629796 28 100.0 32 ............................ AAATCCGATAGCGCCGTCGTCTGACAGTACGT 1629856 28 96.4 32 .........T.................. TGCCAGTTGTGGATTGGTGACACTCTTCATGC 1629916 28 100.0 32 ............................ ATTAATGCTCATACTCGATGTAGGTAAAAGCT 1629976 28 100.0 32 ............................ TAAATCCACACCACCAAACGAGACTTTGCATG 1630036 28 92.9 0 ....................T...C... | C [1630059] ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGTTCATCGTCGAGTTACAGGTTCAGTTGGATCAGAAAGGGGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTTGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGTTCGCTGGTGGATGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGATGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGTTCTCAACTCCGAACAATTAGCTGTAACACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGGGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGAATGGGAACTTCCGTTACTCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1673389-1674077 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP057104.1 Escherichia fergusonii strain RHB38-C01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1673389 28 100.0 32 ............................ GATTAACGCGCCGGTAGTTGCTGGCAATACTG 1673449 28 100.0 32 ............................ GGGAACGGGAATTGTTATATTCGGCAGTCTGG 1673509 28 100.0 32 ............................ GCCTCCTCTTACACTCGCGGCGTAACTGATTT 1673569 28 100.0 32 ............................ GGAAAACATTCGCCGCGCATAATGCGCTCATT 1673629 28 100.0 32 ............................ ACATATTAATCGCGGGATGTTTGTTAAATCAT 1673689 28 100.0 32 ............................ TGGAGCATGGCGGCGCGGCAGGCGCTCCATCC 1673749 28 96.4 32 ..........................G. TCGGTCGTCGTGGCGAGCTGTTTATGACTATC 1673809 28 100.0 32 ............................ GAGGGCGCTGTATTCGTCGGCAGTTGGTAGCA 1673869 28 100.0 33 ............................ CGTCACGATAAATTCAGACCTGAGGCGCTACGA 1673930 28 100.0 32 ............................ CTGACGGAGAAACAGATAAACCAAATCAACCA 1673990 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 1674050 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACCCGATGGCATACTGTCCGGAAGGATAAATAAAAAAGCGCATGTTAAACAATAACATGCGCTTATAATCTGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGACCCTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTATGTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAATTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAATACTCCATCCTGGAATATTTATTCCCCGTAACTCTCAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //