Array 1 3894-4898 **** Predicted by CRISPRDetect 2.4 *** >NZ_NART01000042.1 Gilliamella apicola strain A-9-12 NODE_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3894 29 100.0 32 ............................. CGAATAGGTAGGTGATATGACAGAACACGCAT 3955 29 100.0 32 ............................. CCTTGACTCACCTAGTAGACATGGTCTAAATG 4016 29 100.0 32 ............................. TAATGAGTTACGCTCATATGTGCTTTGGGCTA 4077 29 100.0 32 ............................. GGTTTAGTCGTCTTGAATCGTGGTGGGTCGCC 4138 29 100.0 32 ............................. CATTTATGAACCGTTTCCACTCCCTCTAAATA 4199 29 100.0 32 ............................. AAATGTTAACAATTGTCTCTTTTGTTTCTTAG 4260 29 100.0 32 ............................. GGTTCACATTGGATTTAGTCCGAGCAATAACC 4321 29 100.0 32 ............................. GGTTCACATTGGATTTAGTCCGAGCAATAACC 4382 29 100.0 32 ............................. GCTGATAAAAAAAGCCAAGGGGGATAACTAAT 4443 29 100.0 32 ............................. CGTTATGTTGAATTTGTAGGCTGTATACTGTT 4504 29 100.0 32 ............................. GGTTTTGGATACTGATAAACAGCAACAGCACT 4565 29 100.0 32 ............................. AAATTGAGCGAGTACTGCGCGACGTTGGACTC 4626 29 100.0 32 ............................. GGTACTGCAGATTGGTGGAAGAAACAATCAGA 4687 29 100.0 32 ............................. CTTAGAGCTATGGCTAACAGATTATTTTGAGG 4748 29 100.0 32 ............................. TATGTTCACTAAAGGATTTGAAGGTGAAATAT 4809 29 96.6 32 ............T................ TCCTGTAAAATATTCGTACACAGTTAATGGAG 4870 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : AAGATATATGGTGGAGTTTATAACCTGTTTGACAAAGATGTCTCAAATGCTGACTTCGGTAAAACTTTAGAAGGTCGACGTTACTTCATAGGTACCGAGATTAACTTCTAAATTAACTAATAAGTATTTTCCTATAAAAAAGATGACTGTTAAAACAGTCATCTTTTTCTATTTATACTAATATAGATTATTTATAATCCAAAAATAGAAATACCTTTTTACCCGCCGATAAAATAACTTAGTGCAATGTCAACATAGTAATTTTTTGCTATTTAATAAATCCTAATTATACATTTTAATGTATTATTGTTTTTAATATCATGAAAAATAACAATTTATTGGTAGAATCCTATGAATATTAATTTTACCTACCGTTAATTTAAATTAACTCAATAAAAACATAGTGTTATAAATACTAATTTTATTACAAATTAACCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GTTCTATAAAGCTGGTTAGTCAGACTAAGAACGAAGAATTGGCTAAAATAATTCACGAAATGGATTACATCCCGTGGACAAATGTGTCAACTCCAAGAGGTGTTTATGCTCATGAGATGGGGCACGTGTTACATTATCAATATAAAGAAGATATGGATGATATTATCAAAAAATCATAGGGCGAGCTTGGGCATATGCAATTAGTAATTATGCTCTACATAACAAACGAGAATTTGTTGCTGAAGCGTTTTCGTTGTATATTGAAAATCACATAGAAGCTAAAAAGAGACTTTCTCCAGAATTATTTAAACTTTTCGAATCACTAGATAAGGATATTAAATGAATAAGTTTGATTTATTAGTTGAGCAAGCAACTGAACTGATTAACACCGAGCCACTTCCTGATGATGCAGAGGAACAATTGCAAAAAATTATCGACCAAGCTGACGACAAAACGGAAAGACACATGTTAGGTAGGCTTGCTGAAGCTCTGTTTGTTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18627-18048 **** Predicted by CRISPRDetect 2.4 *** >NZ_NART01000023.1 Gilliamella apicola strain A-9-12 NODE_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18626 29 100.0 32 ............................. TCTAGACTATATCTTATATAAAGGATACCCCT 18565 29 100.0 33 ............................. CTTGCGCTATGTTGCGGGTCGCCGTCGTCGCCC 18503 29 100.0 32 ............................. GCGATTGATACCGTTTCTGATAACATGATTCA 18442 29 100.0 32 ............................. CAATTCAAATAATTATAGCAGATACGCCCGCC 18381 29 100.0 32 ............................. GGTGGCGGTTGTACTGTATTTGAAAGGCGCAA 18320 29 100.0 32 ............................. GCGGACGATTATAGCGGCGTAGACATGCCGTT 18259 29 100.0 32 ............................. TCCATGCAGAACAACCTATTGAAATTAAAAAA 18198 29 100.0 32 ............................. GCGTTTTCTCGTTTCTCCACGGACCAGGCGAA 18137 29 100.0 32 ............................. TTTCCGAAATGGCATGGCGTAAACTTACACCT 18076 29 79.3 0 ............C..........TTTT.T | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.9 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : AAATGGTACTAACTAAAAATCGGTGTTTAAGTCTAATTTATGTTAATTTTGTAACCGAACCACATAAGCAACCAATTCTAAAAATAGAGTGATTTTGATAACAACAAAGCATTAAAAACACCTCAAAAAAATCATATTAAAAACATTGAAAAGTTGGCGGAAATTTCAGCAAATGATTTTAGTTAATAAACAATAAGTTATAATAAGGACGTTCCCTGTATACATATAGATAAACCGTCGATGTATTAATATTGCATATCATTTTTTTGCTATTCAAAAATCGCAATTATGTATTTCATTGTTTACTTTTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTCTATTAATTTTAATTAATCAAATAAAAACATAGTGTTATATATTATGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAAGATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTTATGTAAGATTTTGCTAATTTTTGTCAAAAAGTTTCAGATTATGCCTATGTTTCAGTATAAAAACATCGATAATTAATTTAGTTTAATGGTTAATTTTTATACAAGCCAACGTATTATAAAAATGCATATCATTTAATGTGTTAAGGCATTACTATTGTAAAGACAATGGTGAAAGTAACGATCTGTTAGTTCTTGATGTTCATTAGTTATCTTCGTACAATAAAAAAAATTTTTATTTTGGTTTGTTATGCAATTACATTTAGTGGTTAATACGTTTGGTTCTGATTTGCAGCGTCGTTATGGAGAAAAGATCTATAAACTGACGTTACATGGTGGATTTAGTTGTCCAAATCGTGATGGTACTCTTGGTGTTGGTGGTTGCACTTTTTGTAATGTTGCGTCAATTATCGATGAATCTATCCAAGTCAAATCTATTTCTGAACAGCTTGCAACCCAAGCACATCAAATGAAAAAATCAAAGCGTTATCTTGCCTACT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22351-22078 **** Predicted by CRISPRDetect 2.4 *** >NZ_NART01000023.1 Gilliamella apicola strain A-9-12 NODE_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22350 29 100.0 32 ............................. CAAAAATTAATAACAAAAATGTAGCATTTTTT 22289 29 100.0 32 ............................. TCTGATTTATTCTGCATAAGTTCCCTAAATGT 22228 29 100.0 32 ............................. GAAATTAAATTATCGTTCAACGGTACAGACGT 22167 29 96.6 32 ..............C.............. GCAGATGATAAACGTTTAAAACGATTTGAACG 22106 29 82.8 0 A.............C........T..T.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGTTCCCTGTATATACAGGGATAAACCG # Left flank : GCCCAAAGTACTGTGGATAATTCATCATCAGTCACTTGCCCAGCAGGGAATCCACCACCTGGCGTTGATACGCGTTTTTTAAGACTTTCAAACAGACTCATGCCATCTTTCATTTGCGGTGTCGGTAAATTAATATCGGCATAACAGAATGGTAAACAAAACAATGATAAAAATAGAATGGAAACGGTCTTCCGTAAACCCCAAGGCATAACATACTCCTGAACTTTCGGTAATAGCGTGGTGATATCTTATTGCTAATGATCACAATTATCAATATCAAATAATAATAATTATCATTTTTAAGCTAAATTAAAATTATTAAAATAATCAATATAGTTATTGTTAGCGACCGATTCGCTAATATCAGCTTTATAACATTAATTATGCTGTTAATAAAAATATCGGTTAAATCAAAATGATTTGATTAAAAAACAACCTAAAAAGTTGGTAAAAATTTTAATGCCACTATTTTAATTATAAAACAAACAGTTATAATTAGA # Right flank : ATAGTAGTCATAAATTTTTCCTACAGTGCTACAATTGGTTGGTATTTATAAACAAAATTTAGCCACGGTTATCGACCTGTGGAATGATTTGCGAGAAAAAACAAAATCACCTGATAAAAAGCAACTATACTCTATTACCATTACAAAATTGCAAGGCACGCAAAGGTGGGCAGTCAAGGTCTTAACGATTCAGATACCTGCTCATAACCAAATATCTATTTACACTCATTAACACAAAAAATCAGATTAATAGAGCTATGTTGTATAAACTATATACATATTCACAATAGATATAAAGACAATGTGAGGATGTAGTATGACCAAGCAAGTAGCTGTTTTAGGAGATATGACCAATTATGGTGGTAGGATTATCACAGCGTCAGGGAATGGCTATTGTGGTATGGATGGTGTTGCTCTATTAGGTGACTTGGTATCCTGCCCTAAATGTAGCAGTACTGGCAGAATCATTGAGGGAGCAAACAATTTTATTATCGATGGTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATATACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15732-14909 **** Predicted by CRISPRDetect 2.4 *** >NZ_NART01000057.1 Gilliamella apicola strain A-9-12 NODE_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15731 29 100.0 32 ............................. CGATGGTTCCACTCCGGTTTTGTTATCATGTA 15670 29 100.0 32 ............................. CGCACAACATATAATGATATTATTAAATTAAT 15609 29 100.0 32 ............................. GCAACTAAACATAACATTGACCCAAAATTGTT 15548 29 100.0 32 ............................. GAGATGACTAATGCAACTGACAGAACATTTTA 15487 29 100.0 32 ............................. ATTGAATATCTATCCAACGATAGTTTTATCAT 15426 29 100.0 32 ............................. CATATGTTGACTGTGTGGTTTACCGCCTACCG 15365 29 100.0 32 ............................. CAAAATTTAATTGGCACACTCAAAAAAATATT 15304 29 100.0 32 ............................. ATATTCAAATAAAAAAACATGCGTTTGACATG 15243 29 100.0 32 ............................. TCTTTGTATGTTATTAATTTACCCGTTGCTGT 15182 29 100.0 33 ............................. ATATTGTTACCACAATGAAATGCGCTGACGGGC 15120 29 100.0 32 ............................. TCATTGATTTTATTATTTCTATATGTAAATAC 15059 29 100.0 32 ............................. AACATAAATTCACAGGAATAGTAGTGAAAGAA 14998 29 100.0 32 ............................. TAAACCAAATTCGTGGGAATGTTCTATCAACA 14937 29 86.2 0 ............C..........T..T.A | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : AAAGATAAGTTAAATTATTAGGTCCTCTAAAAGATGAAATGTAAAGCTATTGGTTGTTGCACTCACGCATACTCATCAACTGGTTATTGCCATCGACATTTGTATTTAGTTAAAGCGAATCGAATTGTAAGTAAAGCTGGGTCAATAATGTTCCCTGTGCACATAGGCATAAACCGCGTTACAAATGAACCCGTAAAACTAACCGAATGTTTTCCCTGTATATACAGGAATAAACCAGCGATGCGTCAATTTACATGGCATTTTTTTGCTATTCAAAAATCATAATTCTAAATTTCATTGTTTACCATCTTTTTAATTATATGAAAAATATAAACTTATCGGTGGAATTCCGTAGACTCTAATTTTAATTTTCATCAATTTTAATTAATTGAATAAAAACATAGTGTTATAGATGATGATTTTAATAAAAAAGAGCCTAAAAAATCGGTAGAAATTTGGAAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : CAAATCCATCATAAACAGCCCTAGTGGCGGTTTTTCATTGCCCTTAATCTTTAAATAACATACCATTACCTAAAAAAGGAGATGGTATGAAAAGAATTGTATTACTAGGATTGGTTTGTTTTGCGTTGTCTGGTTGTGGTGATGATAGTGGCAGTAAAGTTACTAATGAGTTTTTGGTTGGTAAGTGGGAGTGTAAATTGGAAGATTACAGATCGAAAATGAAAAATGGAAAATTTACTGATTATGTTAGTGATGGGTTTAATATAATAAGGAAGGAAGAATTCAAAATAGAAAATAATAAACTGTATACTATAAGTAAAACTGAAGTGGATGGACATACTTTTTGGGAATCGAATGATTGGGAAGAAAGTGATAGAACTATTACTCATACGGGACAAATAGTAGAGAAAAAGGAAGATAATTTAACCGAAAAATCAACCAATTCCCTAATTAAAAAATCACATGATACTTATTTAATGATTGAGGAATATATTAAAACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50540-49781 **** Predicted by CRISPRDetect 2.4 *** >NZ_NART01000006.1 Gilliamella apicola strain A-9-12 NODE_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 50539 26 100.0 35 .......................... CCATCAAAGATTGGTAATTTATACCGTGTTTCCTC 50478 26 100.0 35 .......................... CCGTGATTTTTAGATGATTTAAAGAGAGCCGACAA 50417 26 100.0 35 .......................... CCGAGATCTAAATATTTTATCAAATCGGTATCAGG 50356 26 100.0 35 .......................... CCGCGAAATAATTTACCTATTGCAGTCAGGGAAAT 50295 26 100.0 35 .......................... CCGAGAAGCTAAACGAAATTTTGGACAATCATGCT 50234 26 100.0 35 .......................... CCGAGGTCCAGGCACAGACCAATTATTTAGGTCGC 50173 26 100.0 35 .......................... CCGTCTGTTCTAGACTGTCTTTCTTTTTGATAATT 50112 26 100.0 35 .......................... CCGCGTACAGCAAATATTAGATGCCTTACCCAACG 50051 26 100.0 35 .......................... CCGGACAAACTGGGCGTTATCCGCTAAATTACCCA 49990 26 100.0 35 .......................... CCGATAAAACATTATTCCAGAGTGCATTTATCCTG 49929 26 100.0 36 .......................... CCGCACTAAATTTATTAACTCAAATACACCAACATT 49867 26 100.0 35 .......................... CCGGGATTTACCAAACGAGGGTACTCGTCGTGTTA 49806 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 13 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCTTATTGAAGAAGTTTTGTCCGCTGGTGGTATCGAACCGCCTCTACCACATGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTTTAGCCGATAGTGGCTTTAGGAGTCGCTAATATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGGTCGCCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : TCAGCTTTTACTCGTTTTTTATCTAACTAAAATCCTTTGTTGGATAAGTTATTGCTAATTTGTTCTAAGTCAGAATGTTCAGTTTTTTCTGAAACATTAAATAATTGAGCAAAATATTATACAGTTTTGTATCCATTTTGTTTTATTAGCGGTTTATCTAAAAAAGCTTGTCTTTCTGTTAGTATTGGATACCTTCTTGTTCAATAACAACACAATGATTTGATTATAATTAGTTAAAATAGTTTTTATATCACAAAGATCTTCAATAACTTGTTGCAATGATGGTATTGGAAAACACAATAAGGTATAAAATTAGATTTAATTTTTGTCTAATATTTTTATACTTATTGATAATTTATTATAGGTAATAATAAGTTTTTGAGATTATTTGCCTTAAAAGCATGGATTATGGTAGATTTTTCTTATTTATTATTGATATTAAAATAGAAAATATGTTAATACATATCAAGTTATACTCTTTCTTAAAGAAGACGATTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5198-3704 **** Predicted by CRISPRDetect 2.4 *** >NZ_NART01000092.1 Gilliamella apicola strain A-9-12 NODE_92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5197 29 100.0 32 ............................. CCCTCGGTTGAGGGCTTTTTTGTTTCCTATTT 5136 29 100.0 32 ............................. TAACTCTATTTTCTAATATATCTAGTTTAACC 5075 29 100.0 32 ............................. AATTGTCTTTGATGCTATTTATAAAAAATAAA 5014 29 96.6 33 ............................T GTTGGTGCACTTAAATAACCACAGCATCGACGA 4952 29 100.0 32 ............................. TTTGCTTTCTTTATCATAGTTACGACCCTGAA 4891 29 100.0 32 ............................. CAATCGTATGCGATCACGCATGGGTAACGGAT 4830 29 100.0 32 ............................. AGGAAATAATCATTATTCGGATATGACATCCT 4769 29 100.0 32 ............................. AGTTTAAACAATCTTTAGAAACTCATGAATAT 4708 29 100.0 32 ............................. TAACTAATGCGATAATTTCATCGTCTGTTAAA 4647 29 100.0 32 ............................. GATAATAAAAAATTATCAGAGCATGATAGAGA 4586 29 100.0 32 ............................. GATTGACGTAACGAATAGGGTTAACAAATTGC 4525 29 100.0 32 ............................. AAAGCCCTTAATTTTTTAATAAATGAAAAAGG 4464 29 100.0 32 ............................. GCGGACAATGACCCGGCGAATATAAGAAATAC 4403 29 100.0 32 ............................. GAGAGTAAATGCAACAAACTTCATAGTAAATC 4342 29 96.6 32 ............................A GTTTGTCCACCAACCCAGCTAATAGGGCGTAC 4281 29 100.0 32 ............................. CGCACACGTGAAATATTAGAGGTCTTTGATTG 4220 29 100.0 32 ............................. TCAATTTAACTAACATTTGATTGCACCCTCTT 4159 29 100.0 32 ............................. TCTTTTCGCATTATCATTCGCAGATGAGTTAA 4098 29 96.6 32 .............A............... GGTGGGCCGGAGCGTTTACCAGGCTCTCCACC 4037 29 96.6 32 .............A............... AATTAGAAAAAGAAATTGATGAGTTCAAAAGA 3976 29 96.6 32 .............A............... CACGCTTTAATGCGCAAGAATCGCCAGACGGC 3915 29 96.6 32 .............A............... GGGGCGTATGGCTTGGGAGATAACACCACAGG 3854 29 93.1 32 .............A..............A CCGCAAAGTCGGATAAAATTGGAACAGCATAC 3793 29 93.1 32 ............CA............... AGCCTATCGCTATATCCCTATATGAAATGCAA 3732 29 96.6 0 .............A............... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.5 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : CAGTATAAAAATCAATGAATAATTCAAATTAACTTTATGTTTATAAAGAAAACATAATATTTGGTTAATATAAGCATTTGTTTTAATATCGAGTAAGAGATTCGAAATAACAGAGTTTACTTAATAGCTTTCACTTAAAAAATATATTGGAGTATTTAAAGATCGTTGAAATGATATTAACTAAAAACGAGTATATGAATCATAGATTATGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTGAAAATAGAGTAATTTTGATAATAACAAACCACTAATAACATCTCAATAAAATCTACTATTTTTTTAACTAAATGAAAAATATAAACTTATCGGTAGAATTCCGTAGAATCAAATTTTAATTTCCATCAATTTTAATTACTTTAATAAAAACATAACGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTTGTAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : CTTATTTAGCAATATAATCAATGGGTCCATATTAGTTTTAGTCTGAATAACAACCGTTAAATCGTGTTAACAGCAATCAAACAGGGCGGTAAAACTGTTTACGTGAATGGGTTGATTTAAATAACTGTCCACAAAAAGGATAATACTATGTTTAAACGGCTTGGAATAATCAACAGAAAATCAGAGAGAGCTAGTGTTAATGTCTCATGGTAATGAGACAATTTTGTTAGTTGTAGAGACGTATTTATTTGAAGAGATAATTGCATCATGGGTCATAGCAACATTAATTACCATATCTATTTTTTGTTTATACGCAAAATATGTTAGTCCTGAAATTTGGAATTATATAGTCGCGTTTTTATTTGGATGATGTATGAATAAATCAAAAATATTAGGTGCCGCATTAATTGTCGTTATTTTTGTTCTAATTATTTATTTCGGTTACAACAATTATCAGGAAAAAATAGACTCAAAAACGATAAATTAGAATTAACCAATAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4905-4204 **** Predicted by CRISPRDetect 2.4 *** >NZ_NART01000080.1 Gilliamella apicola strain A-9-12 NODE_80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4904 29 93.1 32 ..A..........G............... TCCTAACCGTTAGGGAAAATTTTGTAAACGCA 4843 29 93.1 32 G............G............... TAATTGGTTTTTAAATGGCGAGCTTTGAATGT 4782 29 93.1 32 G............G............... ATATTGTGTCGATATTAAAAGCAAAGCCAAGC 4721 29 96.6 33 .............G............... CAAAAAGCGACGATATATACTTAAACCTTTAGC 4659 29 93.1 32 .............GT.............. AGGATCCTCACCTAGCGCATATGTCCTCATAA 4598 29 96.6 32 .............G............... AGTTCGATCAACCGACTAATGATATTACGCGC 4537 29 96.6 32 .............G............... AAAATCACGAAGTTTTACCAGTATCAGAACAA 4476 29 100.0 32 ............................. GAAAATTCAAAACTTGGATTAAACATTACATT 4415 29 100.0 32 ............................. CATTGGCGGCGTTGATTTAGATACAAATAAAA 4354 29 100.0 32 ............................. CGTCTATCCTCAATATTCTAGTGGTGGTTTTA 4293 29 100.0 32 ............................. CCACCAGTCGTCCTCACGCTCATAGTCTGGTA 4232 29 89.7 0 .............G......A.......A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 96.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TATAAAAATCAATAAATAATTTAAATTAACTTTATGTTTATAAAGGAAATATAAAACATTGAGTAACTAACAGTGTTTACTTGTAATGTTGATTAATAGATTTGAAATAACAAAGCTTAAATAATGGTTTTTACTTAAAAAAAATAGTTGATTACTTTAAGTTTGCTGAAATGATATTAACTAAAAACGAGTATATGAATCCTAGATTAGGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTAAAAAATAGAGTAATTTTGATAACAACAAAGCACTAATAGCTTCTCAATAAAACTTACCATTATTTTAACCAAATGAAAAATATAAAATTATCGGTAGAATTCCGTAGAATCTAATTTTAATTTTCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAGAAATTTATCAGTCAATATTTTAATTATAAAACAGTATGTTATAATAGG # Right flank : AACGGTCAACATATTCAGACGTTTTAATCATATGCACAGGGATAAAATACAAATCCACTACCGCCTTTGTAGCGGTTTTTAATTGACCTAATGGTTAAATAGCATACCATTACCGAAATTTAATTATTAAGGGAATGGTATGAAAAAGATTAAAAAACTTTTATGAAGCTTTTTTGTTTTCAAGATAAAATTTAATTGCATCAATAATCAGTTGCGCTTGAGGTACCTTTAATTGATTGCTTGCTTCCTCAATTAATGCAATATCATCTACATGAAGCTTAAAACCTTTTGTTTTCACACCTCGTTTTTCGTCACTTTTTTTTTGAATTACAGCCCTTGTTAATGCCATATAATCACCATGATTTTTAAATAAAAATTGTTATATTTAAGGCCGCAGGTGAGGACTGCAACCTTCAACCTTTGAAGCAGTTTTAGTAAACTGTACAACTTCAGATTATTAAAACTACGAGAATTAAGATTCTGTTCTTCTTGTTTCTCCC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11354-10227 **** Predicted by CRISPRDetect 2.4 *** >NZ_NART01000080.1 Gilliamella apicola strain A-9-12 NODE_80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11353 29 100.0 32 ............................. ATATCCGTGCACATACACCAACCTAGATTAAA 11292 29 100.0 32 ............................. CTGGGATCCTTACCTTGTGCCAGTAGCTTCTT 11231 29 96.6 32 ............................C ACAACCTGTTACGTATAATGTTGATTTAGTGC 11170 29 100.0 32 ............................. ACGTAATCGAACTGTACCAATCACAAAAGATC 11109 29 100.0 32 ............................. TTTCTGTATGATCAGTATCACGATTGAGATTG 11048 29 100.0 32 ............................. CTGTCGAACGCTACACATTGCAAAAATTAAAT 10987 29 100.0 32 ............................. GATGTTAGTATTACCAGTCATTATTGATCAAT 10926 29 100.0 32 ............................. GCAACATCGAGCACGAGGGCGAGACACAGCAA 10865 29 100.0 32 ............................. AATGCCCTGAATGCAAATTTATGAAGCCGATC 10804 29 100.0 32 ............................. TTCAATTTCTTTTTGATTATTATCATAGAAAT 10743 29 100.0 32 ............................. CTGGACATCGGCATGATTGAAATTATTCTACC 10682 29 100.0 32 ............................. GGCGTTAGAAAGCTATTACGTCTGGAAATGCC 10621 29 100.0 32 ............................. CGTGGGATGATAAAAACGGTTGTTGGCGAGAT 10560 29 100.0 32 ............................. GATTAAAACACGCTCGGAACATTTGAAAGATG 10499 29 100.0 32 ............................. TTTCTGTATGATCAGTATCACGATTGAGATTG 10438 29 100.0 32 ............................. CTGTCGAACGCTACACATTGCAAAAATTAAAT 10377 29 100.0 32 ............................. GATGTTAGTATTACCAGTCATTATTGATCAAT 10316 29 100.0 32 ............................. CGGTCCAACATTAGAGACCGTGTTGGTTTTGT 10255 29 89.7 0 .......T..................TT. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.3 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : ATATAAGCATTTACTTTTAAAATTAAGTAATAGATTTGCAATAAAAGCCTTACATAATGGTTTTTACTTAAAAAAATATAGTTGATTACTTTAAGATTGCCGAAATGATATTAACTAAAAACGAGTATATAAATCATAGATTATGAAAAATTTTGTAACTAAGTTACACAAACAAATCACTCTAAAAATAGAGTAATTTTGATAACAATGAAGCACTAATAACATCTCAATAAAACTTACTATTTTTTTAACCAAATGAAAAATATAAACTTATTGGTAGAATCCCGTAGAATCTAATTTTAATTTCCATTAATTTTAATTAATCAAATAAAAACATATTGTTATAGATTGTGATTTTAATGAAAAATATTCTAAAAAATCGGTAGAAATTTGACAGCCAATATTTTAATTATAAAACAGTATGTTATAATTGG # Right flank : GATTGGGTGCATCGATTCTCTCGATGTTATTGTATATTCCCTGTATATATATGAAAAATTAGAAGGTATTGTTATAAAAAATAAACGAGCAAAGTTGTTTTTAAAGACAATATCTGATTTATTAAGATTAGCTGTAAATGTTTTTCTGAAACACAATAAAACTTAATCTAATATTAACCAACGATTGTAAGGAATTGATATGAAAAAGATACTAATGTTAATTACCGCTCTATTTTTATTCGGATGTGACAGGACCTATACTGTGGAAGAGTTCAAAAATGATGAAAAACTAACAGATGAATACCAAAAAAAATGTCAAAACGGTGAAATTGATGGTGATAGTTTAAATTGTCAAAACTCTCGCAAAGCAGTAGTTGTACGAAATAAAGTTAGTAATGCAAGTTGGAATTAAAGTCATTTTAAAAGTGGCTTTTAAAACTTTATCTGTGGTAAGTTTTTAGACTTAAATTGATTGTTATTTATTTGAAACTTATCACTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //