Array 1 182709-180059 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFRE01000005.1 Klebsiella pneumoniae strain 738-3DZ2-22B NODE_5_length_352665_cov_82.6963, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182708 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 182647 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 182586 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 182525 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 182463 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 182402 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 182341 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 182280 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 182219 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 182158 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 182097 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 182036 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 181975 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 181914 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 181853 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 181792 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 181731 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 181670 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181609 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 181548 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181487 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181426 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 181365 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 181304 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 181243 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 181182 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 181121 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 181060 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 180999 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 180938 29 100.0 32 ............................. CCGCTTTAACCCGCTCAGGCAGATCCGGGTGA 180877 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 180816 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 180755 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 180694 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 180633 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 180572 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 180511 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 180450 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 180389 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 180328 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 180267 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 180206 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 180145 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 180087 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 119203-120323 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFRE01000017.1 Klebsiella pneumoniae strain 738-3DZ2-22B NODE_17_length_121764_cov_58.0377, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 119203 29 93.1 32 ............TG............... TAACTTTACCCCGGATCCTGATGAACCTGTAC 119264 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 119325 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 119386 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 119447 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 119508 29 96.6 25 .....T....................... AACATCAGTGGAAATCCACTGCGGC Deletion [119562] 119562 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 119623 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 119684 29 100.0 32 ............................. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 119745 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 119806 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 119867 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [119878] 119929 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [119934] 119991 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [119996] 120053 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 120114 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 120174 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 120235 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 120296 28 86.2 0 ..........A.....T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 95.1 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //