Array 1 33299-34388 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFJN01000004.1 Gordonibacter urolithinfaciens strain An234A An234A_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 33299 36 100.0 30 .................................... TTTGCAAGCATTGCTGCGGACAGCATCACG 33365 36 100.0 30 .................................... CGGGTAGTACGTCGGTTCATCGCTCATGTA 33431 36 100.0 30 .................................... ACGTCGGAATCGTCGCCGTACTCATCCATA 33497 36 100.0 30 .................................... TCGCCCGTGCGCTTGAGGTAGAGCGTCTCG 33563 36 100.0 29 .................................... CGTAGCCCATCGGCTCCGCGACCTCGGCG 33628 36 100.0 30 .................................... CTCACGGTTCCCGCCGGTGTGCCGGAAAAG 33694 36 100.0 30 .................................... GCGCAGGCCGAGAAGATCATCCCGCGCGTG 33760 36 100.0 30 .................................... CCTTTCGTGTGGCTGGACGGTGCTGTCCGC 33826 36 100.0 30 .................................... GAACGCAGCGCCAGCGGAACGATGGTCACC 33892 36 100.0 30 .................................... CGTGGGCCACCGTCTTAAGAGCAGTTAGAC 33958 36 100.0 30 .................................... ATCGACGGGGGCTACCGAATGCTACGCACG 34024 36 100.0 30 .................................... TTTCTCGCCTTCTGCGGCCTCGTCAGCGTC 34090 36 100.0 30 .................................... ATTGGCCTACTACGACAAGCCAATACCCCC 34156 36 100.0 29 .................................... CCTCGCGCACGTACTCTCGCCTGTCAATG 34221 36 91.7 30 ..............G.......G.....G....... AAGCGGCTGATGCGCTCGTCGTATGTGCTG 34287 36 75.0 29 ..A..A.TA.G.....G...C.....T.......G. TCATCTTGGGCGCGTAGCCTTCGGTAGCC 34352 36 77.8 0 ..........G...G.TGG.G.........A....A | T [34385] ========== ====== ====== ====== ==================================== ============================== ================== 17 36 96.7 30 GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Left flank : CGCTTATCGGCGAGGTGCTTGAGCGTTTGGAGGACATGGTTTTGTCCGAGGACGAGGTGCGCCAAGAAATCGAGGCGGCGGGCTTGGCTTTGTCGAACCGGGTGGCATCGCTCGGCCTGCGGCTTCAGTCGGACTATGCTTTTGAAGTACAATGGGAAATGCGGAAATACCTGAAGGCCTTCGATTTCGGCGTCGAGATCGATCCTTCCGACAAGCTCCTTGACAACTTGATAAAGTTCTTGAAGTTTGCGTCGGACGCTGCGTTCGAAAAGCAGTTGGTTTTCGTGAATTTGAAAAATTTTCTGACCGGGGAAGAGGTCGAAGAGTTCTATCGGCAAGCGATATTTTCGAAGTTGCACGTGCTGCTGCTTGAGAACGCGCCCGATGACGCAACGTATGAGATTGAGAGGAAAATGCTCATTGACGTGCATTTTCTGCAATCATGAAAAGTTATGCCAGCCGGTTGTCCGTTCTTCTGCAGAAAGAATTTTGCCCCACCG # Right flank : ACGAATAGGGTGATCGACTCGCGGGCATCACTTTATTTCGGGGCGATTGCCTGTACCATAATAGGGATAGATAGTTTATACTCGCACGTAGGGATTGCAAGCGAACCTGTTGCGAGGAGGAACCATGGCCGTCAACCGTCAGAAGCTCAAGCTCCTGTACCTCATGCGGATGCTCGAGGAGGAGACCGACGCCGAGCAGGGCCTCACGATGTCGCAGATCCTCGAGCGGCTGGAGGCGCAGGGCATCACGGCCGAGCGCAAAGGCATCTACCGCGACATCGAGGCGCTGCGCGAGTTCGGCCTGGACGTGCGCACCTACCAGCGCGCGCCGGTGGAGTATGCGCTGGAACGGCGCGACTTCGCCTTCCATGAGCTGTTGCTGCTGGTGGATGCCGTGCAGAGCTCGCGCTTCCTCACGCAGCGCAAGAGCGACGCGCTGGTCGAGGCCGTGAAGAGGCTCGCGTCCGCCCGCCAGCGCGCGCTGCTCGACAAGCGCCTGC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 85301-85933 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFJN01000007.1 Gordonibacter urolithinfaciens strain An234A An234A_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 85301 32 84.8 34 ..........-ATA..................T TCCCAGTTGGTCATCGCAGCGGGGCGCTTTGGCC 85367 32 84.8 33 ..........-ATA..................T AAGCACCGCCTCGAACTCGTCTGGCTCTTCGCA 85432 32 84.8 33 ..........-ATA..................T CTTTGATCCGCGAACTTCTCGTTTCGAATAACC 85497 33 100.0 34 ................................. TTCAGACTCATGGCGCGCTCCTAGAACATCGCGT 85564 33 100.0 34 ................................. CAACAACCTCGCGGCCTACCGCAAGGCCGGGCAG 85631 33 100.0 34 ................................. CCAATGTAGGCCCAATCGTCGTTCGGTATGATTC 85698 33 100.0 36 ................................. ATCTTGAAGACCCAGGACTTCGCGTCGGGAAGCCGC 85767 33 100.0 35 ................................. CCTCGTCGGGCATGAGCGCCGAGAGCGCCTTGGCG 85835 33 97.0 34 ...............................G. ACCGCATGCTGCACAACGAGAAGTACACCGGCGT 85902 32 84.8 0 ..T..A...T...-..................T | ========== ====== ====== ====== ================================= ==================================== ================== 10 33 93.6 34 GTCGCGCCCCTCGCGGGGCGCGTGGGTTGAAAC # Left flank : GGTCCCTGCATCGGCTCGGTCGGGCTCATCCCCGACCCGCAGCGGCGTAACGTCGATGCCCTCATGCTGGGGTACTCCCTGGCGAAGCCCGCCTGGGGCCGGGGCTACATGACGGAGGCGTCGCGCGAGGTTATCCGCTACGGTTTCGAGGAGCTGGCCCTCGGCCTGATCTCCTGCACGCATTACCTGTTCAACGATCGCTCTCGACGCGTCATCGAGAAGTGCGGCTTCGAACGCGAGGGCGTCATCCATCGCGCCGAGCCCGCTCCCGACGGCACCATGCAGGACCTGGCGACGTACTATCTGACGCGCGCGTCATGGGAGGAGGCCTCGCGCGAGAGCGCGCGAAACGGCGCGAACCCGAAGCTCTGGCAGTCCACTCAAGAGGTTCGCGCAGAATGACACGCCCAGAGGGATAGCTTGCTGGTTGCGCAAGGTGCTACGCATCTTGAAAAATGAATACTATAAGTGAAAAATGCACTATCCTGCATAAACTGCCA # Right flank : TGCCGCTGCGCTAGCTTCCGATAAAACGAGTGATAGGCCTCGGCCTCTGCGAAGCTACCTGATTTGTCACTGCTGCAGTTGCGAAAGGGCTGTGAATTGGGTGCGCACCGTAGCGGTATCGCGCTCTTAGCACCGGTTTCGACAGACATTTGCGTCCCCATGCTACAATGCGCTCATGATGCGCGAGAGCGACATATACGAGCTGCGGCTGTTCGATCGGATCCTGATCGTCTTTCGCATGTCGCGCGGCGAATACGGTGATCTTTCAGTTGAGGTTCTCTCGGCAGACTCGTCGGCAAGTAGCCTTCTTCCGTTGTCGTTCGATGGAGAGCCAACCGACGAGCGTCTCTTCGAATGGATTCGTCGACGGCGCATCCCGAAGAATCGCGCCTATGTTGACGAGATACTCAAGTCGTGCGGCATCGAGTCCGACGATGCGAAATCGATCATCGATGTGAGCAAGGGCCTTTCGCTCAACGATTCCTATTGGGTTGTTCCTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGCGGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 95488-97685 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFJN01000007.1 Gordonibacter urolithinfaciens strain An234A An234A_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 95488 31 100.0 33 ............................... TCCGGCCGGGCGCTCATGACCGACTGGGCAGAG 95552 31 100.0 37 ............................... CAGGGGCTCGGCCAGGAAGTCGTCGTGGGCCGAGTCG 95620 31 100.0 34 ............................... TTCACGGCCATGGCCGCCTCCTTAGTCCTCGTAG 95685 31 100.0 34 ............................... TTCACAGGCAACGCGGCGGGCGGCATCCGGCCCC 95750 31 100.0 36 ............................... TTTTGCCTGCTCGTAGGCGAAGGCGACGGCACGATG 95817 31 100.0 33 ............................... ATCGACGAGGTGGAGAACGGCCCCTTCGGGGCA 95881 31 100.0 38 ............................... CTCTTTCATCTGGCGAATTACCTCACGCCATTCACCTT 95950 31 100.0 37 ............................... GACACGTACACGACGCCCGATTCCATGCCGTCGTACT 96018 31 100.0 33 ............................... AAGGTGCTCTCCCGATAGGCACGGGAGCGGCAG 96082 31 100.0 33 ............................... AGGGCCATGTCGTAGTCGAACACGCGGCGCATG 96146 31 100.0 36 ............................... ACGGCAGGGGCGAAGTGGGTCGCAGACCAGCAGACC 96213 31 100.0 36 ............................... CGCCCCTCCCCGCGCTTTCGCGCTTGCCCTTAGGCG 96280 31 100.0 36 ............................... TCGGTATACGTCCTCGTCATGGATCGTAATTCCGAG 96347 31 100.0 33 ............................... TCCAACCCAGAGCAAGAGGCGTTGAATAAGTAC 96411 31 100.0 34 ............................... ATGGCCAAGATGCGCGACCTTGCCGACACGTCCG 96476 31 100.0 35 ............................... ACGATAAGCAGCGGGGCCGAGCTCTCGATAAAGAA 96542 31 100.0 33 ............................... ATCCTGGACGCGTCGCCCGCGATGCCGCGCGCG 96606 31 100.0 34 ............................... TCCATTGCTTCCCGTCGTGCCACGCGCACCGCCT 96671 31 96.8 36 ......T........................ AGCAAGTCGTGGTCTCGCGCGTAAGGCGCCAGCGCC 96738 31 100.0 37 ............................... CCCAATGGGGATGTGGAGCTAGATTACCGCGTCAACT 96806 31 100.0 33 ............................... CAATGCGGACATGGTAGCCGCCGCGTGAGATTC 96870 31 100.0 35 ............................... CAGCAGCCCAACATCGACCATCGCCGAGACGAATG 96936 31 100.0 33 ............................... TTCGGGCTTACGCTTGATGATTAGCACTTGGCA 97000 31 96.8 33 ..................T............ GCCGACGCGCTCAACTGGGTGAGCGCCAGCTCC 97064 31 100.0 36 ............................... AACGCGACCGACCCCATCGGCTGGGCCGTCACGATC 97131 31 100.0 36 ............................... ACCGAGAAGATGGGCGGCATGTACTTCGACGCCATC 97198 31 100.0 33 ............................... CGTCCTCCATATGGTTCAGGCGCTCGGGCGTGA 97262 31 100.0 33 ............................... TTCGCCGTGCCGTAGATTTCTGGCTTTAGCTTG 97326 31 100.0 36 ............................... GGCATCGGATTTCCTTTCCCTCAACCGATGAGTATA 97393 31 100.0 34 ............................... TCCCAGCCGTCGACGAGCTCCACCCTCTCCTGTA 97458 31 100.0 33 ............................... ATCCCGCCTGGCCGGACGCGCGGCATGCGCGTA 97522 31 100.0 34 ............................... CTCCCGCGTGCGCGCCCCTCTTGCCCCAGTTGCC 97587 31 100.0 35 ............................... ACGTGGGATGCGGACAACATGACGGAGTTCGACGT 97653 31 90.3 0 .....C...A...A................. | C,C [97657,97659] ========== ====== ====== ====== =============================== ====================================== ================== 34 31 99.5 35 GTCGAGCCCTCACGGGCTCGCGGGTTGAAAC # Left flank : GTTCATTTGGAGGTAGCGATGTACGTGCTCGTTACGTACGATGTGGAAACGGCAAGCCCGCAGGGATCTCGCCGGTTGCGCCGGGTTGCGAAGATTTGCGTGCAGTATGGCCAACGCGTGCAGAACTCGGTGTTCGAATGTTCGCTCGATCCGGCGCAGTTTGAGACAATGAAGAGCGAGCTGATGAAGGCGGCCGACCTGACGCGTGACAGCCTACGGTTCTACAATCTCGGGAAGAACTGGAAGCGAAAAGTCGAGCACGTGGGAGCAAAGGAGGCTTATGACCCGGAAGGGCTCCTATGCGTGTGAGAGGAAATGCGCACCTTGACAATGTAGAAGCTCTATTGCGTGCTGCGCGAACCCCAAGCGATGGCGCGCCATTCGGGAGGTTCGCGCAGGTTTTAAGCTTCACAAGCCCGCTGATAGCTGTTCATGGGGCGGACTGATTGTCTAATGTGAATATGATAATCAGAATATACGTATATATGCATATTCTGACA # Right flank : CGAGCACTCCAACAGTGGTTTCTTGCAGAACCGGTTGATCATGGCGGGCTCCTTCGCGAAAAAAGGCGCTGCATACATCCATGACTTAATGGGGCATTTCCTCCTAAAACGATGTGACTGCCGAGGTACGCCCGCCCGACTCCGCGCACATGCTATGTCGCACCCCTCGACGGGCGGTAGCGGTGAGCGGCGAGCCGGCTGGTGCGGTCTCGGCTACCTGCAAGGAGGCTCGACGAAGGTTGGAGCTTGCGGCGATCTCCAAGCAGTTGGTCTATAATTCTCGTTCGTAGAAAAACGGGAGAAGGGGATCCATGGCGTCGAAGAAGCAGCAGGCAGGGCGCGCCTTAAGGCGGTTGGCGCGGAAGAACCCGCTTGCCGCCCTCGCCATTGCGGCCGTGCTCGTGATCGGTGCCGCGCTTGGATGGTTCGGCGCTGCGGGCGGCGGGGTCGCGGAGGATGCCGCGCCGGGCCGAGACGGCCAAGCGACTATCGCCCCCGTA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGCCCTCACGGGCTCGCGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //