Array 1 215511-214627 **** Predicted by CRISPRDetect 2.4 ***
>NZ_JAACOR010000003.1 Salmonella enterica subsp. enterica serovar Bahrenfeld strain 1103a 3, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
215510 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC
215449 29 100.0 32 ............................. GAGGCCGCGAGGTTATAAACAGCCTGCGAATA
215388 29 100.0 32 ............................. CTCGGACGGAGTGTTAACACCGTTAATGATTA
215327 29 100.0 32 ............................. CGTATTTTTGAACTGGCCAGCGCCACCGATGC
215266 29 100.0 32 ............................. GGTTACGCGGGCGTCTGTTAAAGAGTCCTCGT
215205 29 100.0 32 ............................. AAACAACTCTGTCTATTTTATGAATAGTTAAA
215144 29 100.0 32 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATG
215083 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT
215022 29 100.0 32 ............................. GTACGTTGCCAGATTGCTTTCAATGATGGCGT
214961 29 100.0 32 ............................. CGCGCAACATTCATTACTGCCCACTATTCAGA
214900 29 96.6 32 ...................A......... CCCGCGTAACGTGGGCTTTTTAATAGTCAGAA
214839 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC
214778 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG
214717 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA
214656 29 96.6 0 ............T................ | A [214629]
========== ====== ====== ====== ============================= ================================ ==================
15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : AATGGATGTAGATAGAGAAGCTACAAAGATTTTGGTGAATCTAATGTAATAACTTCTCTATACAACGGAGTTAGAATAATACCCGTTATCCAACCAATCCAAAACGTTTACTATAATAGCTAGCTTCTCCGGCATCAGATACCAGCACAACCTGTCCGGAAGGGCGATGGTGGCGTTTTCTGAAACAGGCTAATGTTTCCTCATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTCGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCTCGATCGTAACCGAGATCGTAACGTAATAAATTTTGCGCAGCCACTGAACGTTGGCTAAGGACTTTGCCAAAGGCAACGTCAGAGATCGTC
# Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGCCACTCATTCGT
# Questionable array : NO Score: 6.23
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.65 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 223835-223441 **** Predicted by CRISPRDetect 2.4 ***
>NZ_JAACOR010000003.1 Salmonella enterica subsp. enterica serovar Bahrenfeld strain 1103a 3, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
223834 29 100.0 32 ............................. ATATCGTTGTATTTGGCGACCAGATCATCATA
223773 29 100.0 32 ............................. CTTAACCCCGGATTTAAGAGCCGTATCGAGAT
223712 29 96.6 32 ............................T GGTCCAGTCCCGGTCCTCTACCGAACCAAAAC
223651 29 100.0 32 ............................. AGCCGTTCCCGTTGAATACGCCGGCGGTTATC
223590 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
223529 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC
223468 28 86.2 0 ...............A.AA......-... |
========== ====== ====== ====== ============================= ================================ ==================
7 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT
# Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACACACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTAGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGCATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC
# Questionable array : NO Score: 6.11
# Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.65 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//