Array 1 148170-148666 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAO01000004.1 Helicobacter sp. 11S03491-1 NODE_4_length_192795_cov_78.1474_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 148170 36 100.0 29 .................................... TTTGAAAATTAGTTACTAACCACCCAATC 148235 36 100.0 30 .................................... ATCGATATTGCCCTGAGTGATGAGAAAATT 148301 36 100.0 29 .................................... CAAATGTTTCTATACTCTTTTGAATGTCT 148366 36 100.0 31 .................................... AAACCCCACGTTAAAAGTAGAACTTTTTTGG 148433 36 100.0 30 .................................... AATGTGATTATAAATAATGCCTCCAATGAT 148499 36 100.0 30 .................................... AATCAAAAAGCAATTTTATAATCAAGTGTG 148565 36 100.0 30 .................................... GAAAAATTAAATCAATGCCTACAGAAGAGC 148631 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 100.0 30 GTTTTAGGCAGTTTTTAAATTCTTCTATGCTAAAAT # Left flank : TTGGGTTTATGGGATGTGGCAAAACAACTATAGGCACGCATTTAGCGAAACATACAGATAAATATCTGATAGATACAGATTCTCTTATTAATCTAAAAGTTTCTTGCAGTATTAAAGAAATTTTTGATTCCTATGGAGAAAAATATTTTCGCACTCTAGAAGCAGACTTTATCAAATGGGCACAAAAAAGTATTTGCAATGCTATCATCTCTACAGGTGGGGGTATGCCTATTTTCAATCCAGTCAATGCAATGGGAAAGGTATTTTATCTCAAGATTGATTTTGAAGCAATATGCAGGCGTTTAAATTCTTCAGAAATTGCTTCCAGGCCTCTTTTTTCGGATTTAAATAAAGCCTATGAACTCTATATCCAACGTGAGAGTATTTATGGAAAATCTGCTGATGTTATTATTGATGCAAAAGCACCCATCAATCAAATTCTTACCCAAATTCTTAAAAATACACTCTAATAAAATCCTATCTGATACACATATTACTTA # Right flank : TAGACCTTGTTTTTATTCCCTAAATTTGGGAGAAAAAAGGTCAAAAAGCATAGAAAATATGCTATAATACCAATCTTTAGAAGAAGAATTTAAAAACTGCCTAGAATAAATGGTTATAGGGTTCCATGTGGAGTTACAATCTCCGAAAAACCCTAAAATAATAAATATTTTTCATTATCTTCAAGCCTTTTAAAACAACTTTCAAAAATAAATCAATATTTTTAGCAAATTTTTCTCTAACAAATATCCGGTAAATATCCACATTTAGTCTAATAACCCACAATGCAAAAAATTAGGGCTATCAAAAACTAAAATTTGAATAAATAGTAGTTTTTATAAAAACATAAAAAAATTCCTAAGCCTAGCCAATCCAATTAAGCAATACATAGAGAGAAAGGAGGGGATCATGTCAAGAGTAAAAATATAAAAAATAACAATTACTTCTAAAAATTATGATAATAATGCCTTATTGATGATTGATAAAATCAAGTTTATTTTAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGGCAGTTTTTAAATTCTTCTATGCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 12213-13634 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAO01000007.1 Helicobacter sp. 11S03491-1 NODE_7_length_101734_cov_75.7818_ID_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12213 36 100.0 30 .................................... TTCTTTTTGATTCATTCCAAAGTCTTTCTT 12279 36 100.0 30 .................................... AGCTGATGAAAAAAGAAAAAATCTAGTCGG 12345 36 100.0 30 .................................... AGCGATCCCAAAGCATGGTATCTCTTTGAT 12411 36 100.0 30 .................................... CTTTTTTGAGGGGTTAAAACGTTTGTTGTT 12477 36 100.0 30 .................................... CAATCTTGTTCAAACCCCCTATATTACTTG 12543 36 100.0 30 .................................... CAAGATTGAAAGCTTAGAGAGCAATTCTTG 12609 36 100.0 30 .................................... AACAAAAGAACTTTTACTTAAAAGATGGGA 12675 36 100.0 30 .................................... TTTAAAATAGACAAAAAGGAGCCCCAATGA 12741 36 100.0 30 .................................... CTTTTTTGAGGGGTTAAAACGTTTGTTGTT 12807 36 100.0 30 .................................... TGACGCCCCGAAATGAGTTCCCTTCCCTCC 12873 36 100.0 30 .................................... AGTAACGGCACGCAGGCTTTAGGCAATGTG 12939 36 100.0 30 .................................... ACTGAAGGTTTTTAGTGTAAAGCCATCCGA 13005 36 100.0 30 .................................... CTAAAGGATTACCCGGATCGTTAGTCAAAA 13071 36 100.0 30 .................................... AAACTCTTTATATCGGCGCGCTCCTCAAGC 13137 36 100.0 30 .................................... TGCCAGCATTAGTTTTAAACTTCTTAAAGA 13203 36 100.0 30 .................................... GCCATCCTTATTGAAGCCACACTCCATACC 13269 36 100.0 30 .................................... AAGTGCTTTTTGATACTGATCTTGAAGTTT 13335 36 100.0 30 .................................... TTTGTCCAATTTTGATAAGCATCTTTACTA 13401 36 100.0 30 .................................... ACCACTTATTTTTATACTTACTATCAAAGG 13467 36 100.0 30 .................................... CTTTGCCATAAAATCGCACGAGAGTTAAGC 13533 36 100.0 30 .................................... AAGAAGAAATTCAAGAAGGAGAGAGCGATG 13599 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTAGGCAGTTTTTAAATTCTTCTATGCTAAAAT # Left flank : AGTCTCATCATTTATGTAATTAGAAATATTCACCCCCCCCCCCACAGCGTATTTCGCGATTCTATAAACTGCATACCTAAATCAAAGCCCGTAATCAAAGCATAAGTGAGATCGCTTTCTTGGGGCTCAAAAACATAATTAATCCCTACTAAAAAATCTCTTCTCCATAAACCATTAAAATCAGAAGAAAAATAAACTTGTGCCCCATTGAAATCACCATCATTGAATTCTAACCCACCAAAAAGCATACCTTGCCAATCTATAGGGTAAAGAGTTTCTGATGGAAAATCTTTTAATTCTTTGCCCAACGCGTAAAAATTCACTCCTCCTCCCACCCCAACATATATTTTACTTTCTGCTAGAGACAGAGATACACCCAAAGACATAAAAAATAATAGTATAAAAAAATTTGCTTTCATTATGAAAATATATCTATTCTAAAATTAAATAAATATTAAAAATTCTATAAAATGTGTTCATCATCTCTCCAAGATGGCGTC # Right flank : TAGACCTTGTCTTTATTCCCTAAATTTGGGAGAAAAAAGGTCAAAAAGCATAGAAAATATGCTATAATACCAATCTTTAGAAGAAGAATTTAAAAACTGCCTAGAATAAATGGTTATAGGGTTCCATGTGGAGTTACAATCTCCGAAAAACCCTAAAATAATACAAGTTGTCTTGGTTTATTTGCTTTTTCTGCTTCACTCTTTTCGCCAAGCAATAATCTCATATGATCAAATTGTTTTTCTGTAAGAATCAAGGCTCTTATATGTCCTTTTGGAGGAATTATTAAATCAAGCCTATCAAGATGAGAATTTGCACTTGCGACTCCCTTGCAAATGCGTACATAAACAGAAAATTGCAACATAATAAATCCATCCTTGATAAGTTCTTTTCTAAATTTTGCAGAATTTTTTCTATCTTCTTTTGTATGGGTGGGCATGTCAAACATCACTAAAACTCTCATAAATTTCTCTTCCATCAGAATCTTCTTTTTTAAATAATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGGCAGTTTTTAAATTCTTCTATGCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 50170-50733 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAO01000008.1 Helicobacter sp. 11S03491-1 NODE_8_length_82130_cov_78.1434_ID_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50170 36 100.0 30 .................................... CCCCCGATAAGCTTTAAACAGCAACATCCT 50236 36 100.0 30 .................................... GAATTTACAGCATATCAATCACGTGATATT 50302 36 100.0 30 .................................... TCGATTTCATTTTCTTTCATTGCATGTTTG 50368 36 100.0 30 .................................... TTAAAACATGATGAAATCATATCACGTTTT 50434 36 100.0 30 .................................... GCTTTTAGGATTAACAGAAAGACATATTTA 50500 36 100.0 30 .................................... GGGATATTCTTGAAACTTTTTAAAATTTCT 50566 36 100.0 29 .................................... TTTAAAGCGATGGATTTGAATTTGATTAA 50631 36 100.0 30 .................................... ACTAAAGTCTTCATGGGTTATCAAGGTAGG 50697 36 97.2 0 .............................T...... | T [50729] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.7 30 ATTTTAGCATAGAAGAATTTAAAAACTGCCTAAAAC # Left flank : GAAGCATATTGTATTTCACACTTATGATCTGTGATGTCCTATAAATTATAGTTATAAAACTGCTAGATTTTGTTGATTTTACAACCAATTAGTTTGTAAAATTTGGAAAATAAATTTAATAATTTTATTTAAATATAATTAAAATTTTATTTTATTGATAATACAAATTTCTCAAATACCAAGATTCGAATTGATTTTATAAGATTTTTTGCATTGTGGGTTATTAGACTAAATGTGGATATTTACCGGATATTTGTTAGAGAAAAATTTGCTAAAAATATTGATTTATTTTTGAAAGTTGTTTTAAAAGGCTTGAAGATAATGAAAAATATTTATTATTTTAGGGTTTTTCGGAGATTGTAACTCCACATGGAACCCTATAACCATTTATTCTAGGCAGTTTTTAAATTCTTCTTCTAAAGATTGGTATTATAGCATATTTTCTATGCTTTTTGACCTTTTTTCTCCCAAATTTAATTTAGGGAATAAAAACAAGGTCT # Right flank : CTCAAATTTACTACAATTAACGTGAATGTATATAAGCATCACATGATCGTTGATTTTTATTTTTTGTATTCTCAGTTTCCAAAATCATTAATTTACGAATTTTTAATCTGAAAAATACTTTTAAAGAAATGAGACAAATCTGTGTCAATTACAACCGGGAGAGACAATGAAAAATATAAGAAAAATTACTTTTCAAAACTACCTATATCACAATGGTTGCCATTTAATGTTATCATGTGGCAACTAAAAGCAAGAACAAGCATGTTATATCAAAATATAAAACACTCATTTTAAAGCAAAATAAGGAAAATTTGATGAACATAATTTATTTAAAAAACTTAACTTTATCCCATTAGTTACTCTGAGATTTTGAAGGCATGAAAACAAGATTTAAGAAAGAGAGCATGCATAAAAGATCAAATAAACACTATTGGGGAACCAACGCACAGTGAAAATGAGAATGAAGAAAATTAGCGAATGGACATACTCAAAACTCAACA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAGAAGAATTTAAAAACTGCCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //