Array 1 104971-107506 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZMN01000005.1 Helicobacter muridarum isolate 216_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 104971 36 100.0 30 .................................... TCTCCTCCCTCTACTACAATGCCCAATGAG 105037 36 100.0 30 .................................... AAAACCAAATAATGTTACAAATCCCTACGA 105103 36 100.0 30 .................................... TTAATCCTGCGATAGAGTTCAAAAAAGGGG 105169 36 100.0 31 .................................... TAACAATTTGATTTTATCAGCTAATAAAGAT 105236 36 100.0 30 .................................... GATTGAACGCTATAGTTATCACTAAACCAA 105302 36 100.0 30 .................................... TTTCCATCTAATTTTAATGCTGCGCTTAGT 105368 36 100.0 30 .................................... AGACTAGAAACCTTAGGAGCTGTAGAGATA 105434 36 100.0 30 .................................... TTAGGGATTAATGAAGCCGAAAAGGCACTA 105500 36 100.0 30 .................................... AGACTAGAAACCTTAGGAGCTGTAGAGATA 105566 36 100.0 29 .................................... AATATTACATATTCGAGTCGCGGTTCTGT 105631 36 100.0 30 .................................... AGACTAGAAACCTTAGGAGCTGTAGAGATA 105697 36 100.0 30 .................................... TTAGGGATTAATGAAGCCGAAAAGGCACTA 105763 36 100.0 30 .................................... TGATGAATTCGACAAACTATCGGATGCATT 105829 36 100.0 30 .................................... CATCAAATAGTGCTGCTAAAGATGAATATG 105895 36 100.0 30 .................................... TCTACAGCATCGCCTACTAAATGACGAGAT 105961 36 100.0 30 .................................... TCTTGATTGACGCGTAGCATTTGTTTTAAT 106027 36 100.0 30 .................................... ATCTAGTTTTCTTTTTTACGCAGAATGCAG 106093 36 100.0 29 .................................... TTTACCTGCCATAAGATTTATGGATTCTG 106158 36 100.0 30 .................................... TTAGGGATTAATGAAGCCGAAAAGGCACTA 106224 36 100.0 29 .................................... TATACTCACCGACAGTATAAGAAAGAGTC 106289 36 100.0 31 .................................... TATTATTTCGATGACTTCATTGACTACGAGT 106356 36 100.0 30 .................................... AAATTTAAACGCAGATTTTGTTTTGAATTT 106422 36 100.0 29 .................................... ACCAACAGGAAGTAATAAGTTCCCTATGC 106487 36 100.0 30 .................................... AATTCCGCGCTTTTTAGCTTCTGCTTCCAA 106553 36 100.0 30 .................................... TGCGAATTAATGAAGTCTTACAAACTGCTG 106619 36 100.0 29 .................................... GATCCGAAATAACTAAACCCGTGACTCCA 106684 36 100.0 30 .................................... TATGAAAGAATATAGTAATGTTGGTATGCA 106750 36 100.0 30 .................................... TGTTCAAAGGTTTCAGGTATGTGGGAGTCT 106816 36 100.0 29 .................................... TACGCAAAGAACAGTATTATTATGTGGAG 106881 36 100.0 30 .................................... TATCGTTTGCAGCTCCCCGAATATCTCGGT 106947 36 100.0 30 .................................... AAATTATTCCATATCATGTTGTAAGCACGG 107013 36 100.0 30 .................................... AATCCAATCGCAAACCAAGGAATATGAAGT 107079 36 100.0 29 .................................... TACGCAAAGAACAGTATTATTATGTGGAG 107144 36 100.0 30 .................................... TAAGAAGCGTAAGATGGAGACGAGACGCGA 107210 36 100.0 30 .................................... TGGCTCTTTACGGGGGAGACCACATTATCA 107276 36 100.0 29 .................................... CACCGCCGCCGATAAGTGCGCTTGTGATG 107341 36 100.0 29 .................................... TTCTCTTTATACCCTGCGTATACATAGTT 107406 36 100.0 29 .................................... TACTATATCTGCGGCGAATATGGTTCACT 107471 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 39 36 100.0 30 GTTTTAGCCACTTATTAAATCATTCTATGCTAAAAT # Left flank : ATAGTCAAAACCCCAATGATGTTTAAAATTGCTCAAGATGTAGCAAACGCGGCAGGAAAACCTTTTGAGTGGGGAATGGAGCAATATGCAAAACATATTACATTAAAGCGACTAAGTGAACCTGAAGATGTAGCAAACGTAGTAGCATTTCTAGCTAGTCCAGATTCAGATTATATTACAGGTCAAGCGATAGTAGTTGATGGAGGTATGTATTTCAATTAAGAAATTGATAAATTTATACTCTTAGTAGTAGATGATTAGGATAACGGATTTTTCTTTAAAATCTTGATATAGAAATTACATAAAACTGTTATAAGGTTGTTGCTAGCTTTTTACTAGCAATGGATTTATTAAGCTTCAAATAAAAACTCTTAATTTATTAAGAAATAAACTTAGCATCTTAGTTATGAAGAAGCTAAAAATGAATTAGTTACATTAACCTGATGATTATAATAAAGTTTTAAGATAATTAATTTAGATTAAATATATTAAAGTTAGCT # Right flank : TACACTACCTTGAAACTGCGTATTTTAGGATATTTGATAAGTTTTAATAACACTAAATACTATAAAATATTTAGTGTTATTGATAAAATTTGGGATATAATTCAAAAATGGTTTAATAAGTGGCTAAAATAAGGGAGTTCAGGATCTCCCGCAGGGTTACAATCCCTAACAAAATCCTATTTTTACTTTAAGCTTAAATATTGGTTTATATCATGCTAAGAGTAAATTCTACATAAAAATCATAATATCAATATTTTTTACTTTATTTAAGTCACGTTGATATATCTGCCTTTAATATATTTCTTAATCTATACAAAGATTCAAAAATATACGTAATTAATCACAAGTCATATTAAAAAAGCGTAAGCTCCTTTGGCTTATTTGCCTGTTCATTATTGCTTATCTTACCAAGCAAAAGTCTCATGTTATCAAATTGCTTCTCTGTGAGTATTAATGCCCTTACATGCCCTCTTGGCGGCAAGAATAAACTAACTCTATCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCACTTATTAAATCATTCTATGCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //