Array 1 46905-46407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQCV010000009.1 Holdemanella porci strain MSK.10.32 NODE_9_length_46923_cov_361.89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 46904 36 100.0 30 .................................... TCATGTCTTTGATGTAATAGTTGAGTATAT 46838 36 100.0 30 .................................... ATAAACGCTTTGCAAAGTCTGTCTTATCAA 46772 36 100.0 30 .................................... CAAGACAAAACATTGATTGATATTTTGAAC 46706 36 100.0 30 .................................... TTCAGATGCCGAAGTACACGATTGCTTATT 46640 36 100.0 30 .................................... AAAAACGAATCCGGTCAAACAGTGGACGAA 46574 36 100.0 30 .................................... AAAGGAGAGAAAGTTAAAGTCATGAAGATT 46508 36 100.0 30 .................................... CAACTGAAGGTGTCATGCAATATGGAAAGA 46442 36 77.8 0 ..............AAG.............T.TCGT | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.2 30 GTTTTGTTACCATATGAATTTTTGCTAGAACAGAAC # Left flank : GCAAAGTCTGTCTTGTCT # Right flank : TTATTTCTCTTGTGTGACATTGACTACCGCATACTCACATATACCCTCTGTTCTCATTGTAAAACCCCAACCAACAAGGCCTGAGCTAATGATTTTTGTTTGTGTAGTCTTTTCTGCCGATTAGAGTTATGTTGTTTAAATGTACTTCTTGATCATTTAGAATGATAATATTGTTTTTAGTGATTTTGTGATTGAGTTTATTTCTTGTGAATTTTGTCTTGCTTTTATGATTGCCATATACAAAATAAATAGGGGGGCTACTTTAGTAAGTCTTCTGAGTTTCTTAAATAGGATTTCCATATCATATTTGTATGTGTATTCATCTACGAAGTCTTTGCCAAGTAGATAGAAATTTGGTGTTTGTGATTTCTTTTGTGGTTGTGATGTTGTAGGTGGTTTTATGGATGGTATACATATTCACAGAGCCAAAAGTAACGATGGATGTGGATATGGTAGCTGATACTATTATGCAGAATATTGGTTTTCTTTTCTTGAATACG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTACCATATGAATTTTTGCTAGAACAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTGTTACCATATGATTTTTTGCTAGAATAAGAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1027-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQCV010000021.1 Holdemanella porci strain MSK.10.32 NODE_21_length_31329_cov_362.024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1026 36 100.0 30 .................................... AGTCAAGAGTTATGCATTTTAAGTTAGGCA 960 36 100.0 30 .................................... ACTTTCGACGGTGGGATGTGATTTGTATAC 894 36 100.0 30 .................................... TCTTTTGGTCCATTCATCATGTACCCACTT 828 36 100.0 30 .................................... GATGGCTAACGTGTTGTAACTCGAATGTCA 762 36 100.0 30 .................................... ATGTAGCAGAAGGCGAATCAATTCCATTAA 696 36 100.0 30 .................................... TAAGTGGTGGGGAAGTGCCTACGGATGCGG 630 36 100.0 30 .................................... GAAAGGAGAAAAATATGACAGTTAAACCTA 564 36 100.0 30 .................................... GGGCGTTTGTGGTATATCCCGAATCTGCGC 498 36 100.0 30 .................................... TACACAAGCCAAAAAACAAATTGAAAGGAT 432 36 100.0 30 .................................... TTAATTTCTTTGAATAGCTCAGTAACTTGA 366 36 100.0 30 .................................... ATAACCTCTTTGCAAAGTCTGTCTTGTCTA 300 36 100.0 30 .................................... GGGCGTTTGTGGTATATCCCGAATCTGCGC 234 36 100.0 30 .................................... TACACAAGCCAAAAAACAAATTGAAAGGAT 168 36 100.0 30 .................................... TTAATTTCTTTGAATAGCTCAGTAACTTGA 102 36 100.0 30 .................................... ATAACCTCTTTGCAAAGTCTGTCTTGTCTA 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTTTTGTTACCATATGAATTTTTGCTAGAACAGAAC # Left flank : AAGCAATTGATAAAAATGTTGTCACCATATTATGAAGACGAATTACAAAAAGATGAATTTGATCTAACGAGAGATGAATTGATTTTGTTTCAATTGGATTTAGTTGAATATATTTCCAATCATAATTCAAAATATGATAATATCTTTGTTTTTGGCAAACTAGATAATTTAAGTGATAAAATTCTTCAGAAAATCAATAAAATTGAGAATGTCATATTAATGATTTTTACAAATTATTACAACGATTTAATGAATGTACAAAATACAGCTTTATTGCAAGATAAAATAATAGATTTAGCAGACATGGAACAAATTTATTACGATCTATCACAAAAATCACTTCAAACATATACATTACAGGAGGTAGAACAAATGACAATTAATTATTTACAACAAATATACACTCATAAAACACATGATATTTATCAAGAACTAGATCATTTATCAATTAAATAATTAGTATTCTATTACATTCAAAAATGTGCTACCATATTTTTGAG # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTACCATATGAATTTTTGCTAGAACAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTGTTACCATATGATTTTTTGCTAGAATAAGAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //