Array 1 52-1123 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMNJ01000010.1 Klebsiella pneumoniae strain KP35_C NODE_10_length_179305_cov_19.719455_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 52 28 100.0 33 ............................ TCTGATAGGCCGCCTGGACCGCGTCCCGGATCT 113 28 100.0 33 ............................ TACCCGCCGCTTCCAGTATCCGGAATTATCCGA 174 28 100.0 33 ............................ CATCGCGGTTTCACGCTCGATCGGCATGTCCTC 235 28 100.0 33 ............................ CAGCTACTCGCAGCTGGCATCCGCCGCGCGCGG 296 28 100.0 33 ............................ TTGACGCAGATCCGCCCGTTCATGGGTGAGATT 357 28 100.0 33 ............................ TCAGGTACTCCTCTTGTTTTTTCGGTTCCGCCT 418 28 100.0 33 ............................ TAATGCCGCTTTCGTTTCGGGTTGTTGGTGACG 479 28 100.0 33 ............................ TTAAAAAAGGCCGCCATATGGCAGCCTGATGGG 540 28 96.4 33 ...C........................ TGTCGTCACATAGTGCTCTATCCACTGGTTAGC 601 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC 662 28 100.0 33 ............................ CAATAGTCCGCCCGGAGGCGGCTCATTGTGTCG 723 28 100.0 33 ............................ CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG 784 28 100.0 33 ............................ TCTGGTGAAAACCACACCAGGCCAACCGGGCGG 845 28 100.0 33 ............................ TAACGACACCAGGCGGCATGATCACCTATGACA 906 28 100.0 33 ............................ CTTCACGCCGATGGAGCGGTCTTTCTGCGTCGG 967 28 100.0 33 ............................ TATTTCGGAGTGGCCCAACGACGCCGCCGTGTG 1028 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 1097 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 18 28 99.0 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : GTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGTG # Right flank : CTTGTGAGGGATCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52-262 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMNJ01000088.1 Klebsiella pneumoniae strain KP35_C NODE_88_length_312_cov_10.957082_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52 28 100.0 33 ............................ CGCTGTCCAGATAACGCCGCAGATCAGCAGGCA 113 28 100.0 33 ............................ TGTCAGCACCGGCAAAAGCCGCCGCGGCTGCGG 174 28 100.0 33 ............................ TATTCAGGAAAACGCGCGTTATGCTGCCGGTAT 235 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : GTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGTG # Right flank : TCTGATAGGCCGCCTGGACCGCGTCCCGGATCTGTCTTCCCCACGCACGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 195461-196220 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMNJ01000008.1 Klebsiella pneumoniae strain KP35_C NODE_8_length_205000_cov_18.527730_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 195461 28 100.0 33 ............................ TATGCGCGGGAAGCTTTATCCCGATCTTATCCC 195522 28 100.0 33 ............................ CACCTAACGACGTGTCATACCAGCACTCCCCTA 195583 28 100.0 33 ............................ TCAAAAATCCCCGCAATGCAGTGAGGAGATCGG 195644 28 100.0 33 ............................ TTCCTTCACACCCATAAAAGGCGTAACTGAAAT 195705 28 96.4 33 .....G...................... TTTTATTTTGACGTTCCTCAAGTACCCGCACCA 195766 28 100.0 33 ............................ CGATATTTACCGGGATTTCAGCCAGCACGCTCG 195827 28 100.0 33 ............................ CGAGCTCATCGCCTCCCTGGAGACGGCGGGCGA 195888 28 100.0 33 ............................ TATAGTATGACGATTGATTCCACTCATCAATTT 195949 28 100.0 33 ............................ CAAGACACCTGCAAACGGTATATCTTTGGAGTG 196010 28 100.0 33 ............................ CTGTTTCATTCGCTCCGATGGCTCGATCTCCGC 196071 28 100.0 33 ............................ TTTTCGAACGTCATCGACGGCTTTTAGCATTTA 196132 28 96.4 33 ..................A......... CATTGGCTGTGGCGCCTGGACAATCGGCAAAGG 196193 28 85.7 0 .C....T.............A......T | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.3 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTTGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAATTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //