Array 1 8676-9314 **** Predicted by CRISPRDetect 2.4 ***
>NZ_PYKE01000282.1 Salmonella enterica subsp. enterica serovar Wernigerode strain 32evb NODE_254_length_9359_cov_7.964316, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
8676 29 100.0 32 ............................. GTATTGCGCCGCCTGGTTGAGCGTTACGCCGA
8737 29 100.0 32 ............................. GTCGATACAAACACAGGGTGTTTTAAAATTTG
8798 29 100.0 32 ............................. CTTGCAAAACTTCGAGAAGGGGACGTGGTTTT
8859 29 100.0 32 ............................. CTACTGCAGGGATGTTGGGATGTACGGAAAAA
8920 29 100.0 32 ............................. CCGTTGATTAATTTCTCAGTGTTGATGGAGGA
8981 29 100.0 32 ............................. GCGTCGGCCATTTCTCCCAGCTCCGGCACGCC
9042 29 100.0 32 ............................. AGGATTTATCGATATCTGCCAGCGGCGCAAAA
9103 29 100.0 32 ............................. GGGCTGCACCAGTTCCTGCGCGATAAAACGGA
9164 29 100.0 32 ............................. CTCGTCCTTTTTGATTGAGTTCTCGTCATATC
9225 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGCGTT
9286 29 100.0 0 ............................. |
========== ====== ====== ====== ============================= ================================ ==================
11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT
# Right flank : AAAAGCTTCGACAAATCCAGCTAAAACACTACGTGTTCCCCGCGC
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.51,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 1 30669-29602 **** Predicted by CRISPRDetect 2.4 ***
>NZ_PYKE01000260.1 Salmonella enterica subsp. enterica serovar Wernigerode strain 32evb NODE_43_length_30694_cov_7.792780, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
30668 29 100.0 32 ............................. TAGAATGTGCAACTACGCAAAATAGAAATGAC
30607 29 100.0 32 ............................. GCATTTGTCGCAGTAATATTCCTCACGACGAT
30546 29 100.0 32 ............................. CCCGCGAGGGATTTTTTTATGCCCGGAGTAAA
30485 29 100.0 32 ............................. CCTGTACCTCTCCTGTAAATGTTCCGCTAGTT
30424 29 100.0 32 ............................. TTTACGGTATTCGTTGTCAGCAATCCTGATCA
30363 29 100.0 32 ............................. CAGCTGCTTCGCACCTGCCGGGCTACGCCGAA
30302 29 100.0 32 ............................. CTTTCTTTAACGTCCAGTCATTCCTTGAGAAC
30241 29 100.0 32 ............................. CGTCCTGGTACGTCGGCGTGAACCCTGCCGCA
30180 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCGTCTGTGCCG
30119 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC
30058 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC
29997 29 100.0 32 ............................. TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC
29936 29 100.0 32 ............................. GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC
29875 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG
29814 29 100.0 32 ............................. ATATTCAAACGGCGCGGGGGGAGACATCCGGA
29753 29 100.0 32 ............................. GTTACAGTATCATGTAAAACTGTATAAAAACA
29692 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA
29631 29 96.6 0 A............................ | A [29604]
========== ====== ====== ====== ============================= ================================ ==================
18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : CCGCTACCGCGCTGGACTGCGCCGC
# Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT
# Questionable array : NO Score: 6.25
# Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [50.0-8.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.27,5.65 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 1 9017-7467 **** Predicted by CRISPRDetect 2.4 ***
>NZ_PYKE01000056.1 Salmonella enterica subsp. enterica serovar Wernigerode strain 32evb NODE_156_length_14330_cov_8.020035, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
9016 29 100.0 32 ............................. CCGGTTAATTTGTTGTAGCCGTCGCGGGGCGG
8955 29 100.0 32 ............................. CCCGTGTGCCCTTTCCCCTTGCCGTAGTCCAA
8894 29 100.0 30 ............................. ACGGTACACACCATCCTCGTTGATGATGGT
8835 29 93.1 32 CA........................... GCCCCGATAGCGTCAACTATCAGGGCCTGCAA
8774 29 100.0 32 ............................. TGGGTGCGTCTGCGTGATTTTGCAGTGTACCC
8713 29 96.6 32 ............................T ATACGGTGCCGCCTTGCTGTGAATCCACGGGC
8652 29 100.0 32 ............................. TTTATACCGCCCTCGCCGTCTGCCGGAATATT
8591 29 100.0 32 ............................. GGTGCAGGGGCGGCGTATTTGCGCCTGCACCT
8530 29 100.0 32 ............................. TGACAACGGTGACAATAAAACAATCGCCAGTA
8469 29 100.0 32 ............................. GTTCTGTGTTCGTCTACGATTCAGAAAAATGG
8408 29 100.0 32 ............................. CCGCCTAAATAATCCGGTTTCCCATAAATCTG
8347 29 100.0 32 ............................. TGATCGTGATGAGTTGCCATGCGCGCAGGTTA
8286 29 100.0 32 ............................. CGTCCAGTACCCGTCCTCGTCGCGTTCTACAA
8225 29 100.0 32 ............................. GCACTCCAGCGCCACGGAATACAGGTCGGCCA
8164 29 100.0 32 ............................. AAAAAACCAATAGCACACGTAGCATTAGTAAA
8103 29 100.0 32 ............................. TAGCCAACGACTGATAGATGATCTCATAGAAA
8042 29 100.0 32 ............................. TGAGGGGGTTATGACAACCACCATAGTGATAG
7981 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC
7920 29 100.0 32 ............................. CGCGAACGCGCGCAGCAGCTGCCGCAGGCTGT
7859 29 100.0 32 ............................. GTCGCGTGAATCCGGCTAATCTGGATGATCCG
7798 29 100.0 32 ............................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG
7737 29 96.6 31 ...........................T. AAAAAATGCGATCGGTACTCAACCCGGCCAC
7677 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC
7616 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT
7555 29 96.6 32 ...........................A. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC
7494 28 86.2 0 ...............A.AA......-... |
========== ====== ====== ====== ============================= ================================ ==================
26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT
# Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTTTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC
# Questionable array : NO Score: 6.20
# Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.65 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//