Array 1 22363-21399 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXMD01000017.1 Fusobacterium nucleatum strain 12230 MIT 2016 NODE_17_length_36103_cov_20.61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 22362 30 100.0 35 .............................. AAAGAATGGGGAAATATTACAGTTGCTGTATCAGC 22297 30 100.0 35 .............................. TAGTTTTTGAGTAGTCTTTTTCTTTTTCCTGGTCC 22232 30 100.0 36 .............................. TAAAAATCAACAAATACTGCATTATCATCTATTTTA 22166 30 100.0 39 .............................. ATTTATTCAGATTCACTTATGATGAAATAAGTACCCTAA 22097 30 100.0 36 .............................. GATTTTGAGGCTATGGCAAAAGAAAATTTAGAGCTA 22031 30 100.0 38 .............................. CTTAATATCCATAATAGATATATATGATTAATTTCTCC 21963 30 100.0 37 .............................. ATTTATTCTCACCAAGTATGGAGAAGATATGCCAATC 21896 30 100.0 37 .............................. GTTTTTTCATTACCTTTTTTCCACTCTTTTTCAGTGA 21829 30 100.0 37 .............................. ACATAAGGAAGATAATTTTTAAATACTGCGAATGTAA 21762 30 100.0 37 .............................. TTATCTGACCATTCAATAAACTATTTTTTTCTAAATA 21695 30 100.0 37 .............................. TAAAAGCAATGGGAACTTATTGGGGGATGAATAATGG 21628 30 100.0 36 .............................. ACCAAACAAATCAAGAATATTCCAATCTTTTTTACT 21562 30 100.0 37 .............................. GAAATAAGACAATTTATTTGGAATGGACTTGTGTCTT 21495 30 96.7 38 .............................G TGAATTTCTTTAAAATTTAATGTATAATTCAAGTATCA 21427 29 90.0 0 .......................AA-.... | ========== ====== ====== ====== ============================== ======================================= ================== 15 30 99.1 37 ATTTATGTATTTCTATATTAGAATTTAAAT # Left flank : AATCTTTTCAAATGTGGTGGTGATAAAATGTATGTAGTTGCAGTGTATGATATTTCATTGGATGAAAAAGGTAGTCATAATTGGAGAAAAATTTTTGGAATTTGTAAAAGATATCTTCATCATATTCAAAATTCTGTCTTTGAAGGAGAATTATCAGAAGTTGATATTCAAAGATTAAAATATGAAGTTTCAAAATATATTAGAGATGATTTAGATTCTTTTATAATTTTTAAATCAAGAAATGAAAAATGGATGGAAAAGGAAATGCTAGGTTTACAAGAAGATAAAACTGATAATTTCTTATAAAATTTATTGTCTACCTCTCATAATGTAAAATTACTGGAAGATTGACAAAAGTCAAAAAAGTCTTTATTTATAAATAAATTTAAGAAAATAAAAAAAATTTAAGAAATTAAATTTTTTTATTTTTTACTAAAAAACTTATATTGACAAAAAGATATTAAAAAAGTATTATATGGGAGTAGTTTTTTTAGGTAGCT # Right flank : ACAGAAGAAAGGGATTGAAAAATAAAGACTTAATGCTGTTATATAACAAAAGAATAAATAAAAAATTAAAAGGATTAACTCTAGTTTTTTATATAAGTTAATCCTTTTTAATAAGTTAAATTAAATTTATTCAATTTTTTAAGGGGAGTACATTTTTTATTATGTTAAGTATAGCTTTATAAAGTAAACTAAGAATTAAGTATTCATAAAGTAACAGAAAAATTAAAAAAACGAAATTCAACTAAAATATTAATATAATGAACACAAAAATTTAAGATAGAAAATAAAAATTATCAATTATTAAATTAATAAAATTTTATTAAAAATTAAGCAAATTTCACAATAAAAATATTGCATTTAATCGTAATTGGTGTTAATATATACTTAATAAATTTGAAAGATAAATTTAAAATTTTATCTACTAAAAATAGGGAGTGATTATAATGAGTTTTTTAGGGCAAGTTAGAAAAAAAGCCTTACAAGCAAACAGAAGAATAGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATGTATTTCTATATTAGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 39532-42360 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXMD01000011.1 Fusobacterium nucleatum strain 12230 MIT 2016 NODE_11_length_49682_cov_20.4522, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 39532 29 100.0 50 ............................. TTTAATTAGTTCAAACATCCAAACCTTCCGAAATATCAGAACCAATAAGT 39611 29 100.0 45 ............................. TTGATGGTTCCTTTACACATATTAAGCTAACTTTTATTAATAAGT 39685 29 100.0 46 ............................. TCGTCACACCACGAGAGTTGGTTGCACCTGAAGTAGCAGAATAAGT 39760 29 100.0 46 ............................. TATGCAAGTACGTCAGTTCCTTGAGAACCGTCGTAGCATAATAAGT 39835 29 100.0 46 ............................. TCACTTGGAAAACTTCCTCTTAATAATCTAGACATAAGAAATAAGT 39910 29 100.0 45 ............................. ACTTCACACTAGAATTTACTAATCACGAATGGAAATAAAATAAGT 39984 29 100.0 46 ............................. TGTTCCAATGAATGGCAACATATGATGTTCACATAAAGAAATAAGT 40059 29 100.0 49 ............................. TTATATACAAACTGATATTCATAGAAATTGTGAAAAATACAGAATAAGT 40137 29 100.0 47 ............................. TCCAAATCTTATTAAATTTAATATAAACTTTATTTCTCTTAATAAGT 40213 29 100.0 46 ............................. TATAACTACAATATCCATCTCTACCAGAAATTTGTTCAAAATAAGT 40288 29 100.0 45 ............................. TAATTTCTTATAACCTAAATATCCTAATCCTAATACAAAATAAGT 40362 29 100.0 47 ............................. TTTTCTTACATATTATGCATTTGTTGTTGTTGCATAAATTAATAAGT 40438 29 100.0 44 ............................. TTCTCCAACTGGTAGCATACCAGCTAATTGATCTAGGAATAAGT 40511 29 100.0 47 ............................. TTTTCTTACATATTATGCATTTGTTGTTGTTGCATAAATTAATAAGT 40587 29 100.0 44 ............................. TTCTCCAACTGGTAGCATACCAGCTAATTGATCTAGGAATAAGT 40660 29 100.0 43 ............................. TAAGATAGAGAAAATGCTATAGATAATTTAGATTTATATAAGT 40732 29 100.0 47 ............................. TGAAAATACAAAAAGTAACACTTCGCTTTTCGGTGGAAAACATAAGT 40808 29 100.0 44 ............................. TCTTGCAATCTCAATGATTGGTTCAATTAAAGTACAAAATAAGT 40881 29 100.0 48 ............................. TGATAGCATATGGACAAGTAACGGCAAATGTTCAACCAGAAAATAAGT 40958 29 100.0 47 ............................. TTCTCTTATTTGAGTTGATTGGTCATAGTCTTCGTTAAGTGATAAGT 41034 29 100.0 48 ............................. CATTTTTGCTTCCTCACTTTTAAAATATAAATCTTCCATTAAATAAGA 41111 29 93.1 52 ..............A.........A.... CGAATTGAGCTATTATAAGTTTAATATTTTCTGGTATTCTCATTTCATAAGA 41192 29 100.0 50 ............................. CTATATTAATTTTTGTGTTTGTCTTGTGTATCCTAATTTCTCCAATAAGA 41271 29 96.6 52 .............T............... CTAACCTTTTTCTTTCCACTCTTTAAAGATACCTTTTTTATAAAAAATAAGT 41352 29 100.0 48 ............................. CCTTTCATATTCTGTTATACCTAGTATATAATCTTCTATATCATAAGT 41429 29 100.0 46 ............................. CTGTGCTGTTTTAGTTCCATTATAATTAGTTCTGATTTTTATAAGA 41504 29 100.0 46 ............................. CCAACCGCACTTTTTACACTTCCACATTTTCATCACTCCAATAAGA 41579 29 100.0 42 ............................. CGCATTTAAATCACTCCTTTAATTTATTTATTTAAAATAAGA 41650 29 96.6 47 ..............A.............. CAAATAATCATGTATAACTGCTGCTTTTATATATTTTCCAAATAAGA 41726 29 96.6 48 .............T............... CCTTTTTATAATTTTCTTTGTTAATCTGTGTTCAAGTCTAAGATAAGA 41803 29 96.6 49 ........................T.... CAATATTTCTTTTATTTCACTATAAAATCTTCCTTTACTTCCAATAAGA 41881 29 96.6 49 ..A.......................... CCCACGGCTATTTAATTTCCAATGTCCTTTTAATTATAATATAATAAGA 41959 29 100.0 42 ............................. TATTATACATTCTGATTAAATGTTCTCTGTATTCTCATAAGA 42030 29 100.0 46 ............................. TCTTCACAACCATCTGACCAACATTTTTTAACTTGTTGACATAAGA 42105 29 100.0 45 ............................. CTTCTTTATGGATTAATATTTAATGGAAGACATGCTTATATAAGA 42179 29 93.1 48 .............T..G............ TTTTCTCTATTCACTACCATTATTCATCAGCTCCTTCTCTTTATAAGA 42256 29 93.1 47 A...............G............ CCAGTTTTTTTAAGTAAGTTTAAAATAGAATTTGTTGTAACATAAGA 42332 29 79.3 0 .............TA.A..T...T.A... | ========== ====== ====== ====== ============================= ==================================================== ================== 38 29 98.5 47 GAGAATATAACTCCGATAGGAGACGGAAA # Left flank : TATACAAACCAGTTTTAATTAGGTGATAATTATGGATAATTGGGATTTTTTAGATAAAGATTTTGAAAAGGAAGTTTTTGAAGATAACTTTACTGTTATTATAATTTATGATATTATATCCAACAAGAGAAGAACACAGTTATCTAAACTTTTGAGTGCATTTGGATTTAGAATTCAAAAATCAGCATTTGAATGTCTTTTAACAAGAGAAAAATATAAATTACTCATTGAAAAGATTGATAGATATGCAAAGCCAAAAGATTTAATAAGAATCTATAGATTAAATCAAAATGTAGTAACTCAAATTTATGGAGAAAAATTAGAAATTGAAAATGAGATGTACTACTTTTTCTAATGAAAAGTAGACGATATGATAAAAATGGGAAGTTCAATATGATTTTTGATAAAACAAAATATAAATTTTTAAAATTTAAAAAGTCACACGATAATAGTTTTATAAACTATTGCAAACAAAAGTTTTTTTGAGTATAGGAATAAGT # Right flank : ACTCCTTCTATTGACAAGAAATCAATATCTTTTTATAATATCAATATAAAGAAATAGAATTCTAAAAAAGATAAAAAAGCCTAAAAATGCTATGATATTTCAATATTTAATCAAGAATTTCTCACAATTGAAATTTTTACAAAAAGAAATAAAAACTATTTAAGGAGGAATTTTATGAAAAAATTACTATTTTTTACATTGTTTATAGGAATTTGTATGAGTGGAGTAGCAAGTACAAAGGAAAAAAATCCAAATCTTTTAAAACAAGTATATAAAAAGGAAGAATTGATAACATTGGACAAAGAAAAAGTAGCAGGAGGAAACGGAACTTTACATGGGAAATTTGCCTTTACTAGAGATATGGCTACTGAAGAAGATGCTATCAAAGAAATAGGTTGGATGACACTAAATAAAGGAGAATCTGTAGGAGTACACCCTCATAAAAATAATGAAGATACTTACATTATTGTTTCTGGAGAAGGAATTTTTACAGATGGTTC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGAATATAACTCCGATAGGAGACGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //