Array 1 132973-129672 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831303.1 Halobacterium hubeiense strain JI20-1 plasmid pSTJ001, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 132972 30 100.0 36 .............................. GGGATGTAGAAGACGTGAACCGTCGAGTTCGTGCCG 132906 30 100.0 36 .............................. CGCCCATTCGAGCAATCTGTCGTCCCAGAGCGTCAT 132840 30 100.0 35 .............................. GCGTCGTGTACATCTACGGGCGCGACGAGTTCCTC 132775 30 100.0 36 .............................. ATCACGTTGATGGCGCTCTGGGAGGCCATCCAGTCG 132709 30 100.0 36 .............................. ATTTGTTCAGACCGGGGTCGCCGAAGATAGCGAAGT 132643 30 100.0 35 .............................. TGCGGGGAGAGTTCAGGGAACCCCTCAACGGTGTA 132578 30 100.0 36 .............................. GGTTGGGCGGCCTGACACGACCAACAGGAACAGGGA 132512 30 100.0 34 .............................. CTGCGGCACCGAGCCAGTCAGGTAAAGCGACCCT 132448 30 100.0 35 .............................. GCTGCTGGCCGCACCCGGACGAACCCGACCACGTC 132383 30 100.0 36 .............................. ACGCTCGACCCGATGCTGCTGGCGGTGTTGCTGGCG 132317 30 100.0 36 .............................. CGTTGGGTATACCGACGGCTTCGGCGCTAACGCACG 132251 30 100.0 36 .............................. GCGGGTCGCCGTCCTCGTAGAGCGGACCATGCTCGG 132185 30 100.0 34 .............................. GTCTCCTCGCTTGAGACGTTGACCGTCATGCCTC 132121 30 100.0 36 .............................. CTGACGTGGCTGTTGTGGCTGGCGTAGCTGGCGCTC 132055 30 100.0 35 .............................. CGTTGGGTATACCGACGGCTTCGGCGCTAACGCAC 131990 30 100.0 36 .............................. TCCTTGTGAAAGTCCACCTCGGGCGGTCGGAGCCGG 131924 30 100.0 35 .............................. TCGGCGCAAAGCGTGTCGACGTCGCCGAGAACCTC 131859 30 100.0 37 .............................. ACGTCAAACTCAAGCGCACGCACCTACCACACCCAAG 131792 30 100.0 36 .............................. GCCAATATCTCTGTTAACCCGGCAGTCCAAACCCGT 131726 30 100.0 34 .............................. CTGCGCCTGCGCCTCTTCCGGGAAGTACACGTCG 131662 30 100.0 35 .............................. GTCCTCGAGGCGCAGGACCTCGACAGCGAGGACGT 131597 30 100.0 36 .............................. TGATGCCGGAGGTGAGGCCAGTGCCTGAAGAAGAGA 131531 30 100.0 36 .............................. GGCGAGATGGTCGGCGCGACAGATGTTGCAGACGCT 131465 30 100.0 36 .............................. AGACCGAACCATCGGCGGTGCGACTTCAGTATCATC 131399 30 100.0 35 .............................. GACGAGCGCGAACGGCTACGCCGGCACCTCGGGGA 131334 30 100.0 34 .............................. CGGCCACGTGATGGTGTTGTCGTCGGTCATAGTG 131270 30 100.0 34 .............................. CGGATTATCTCGAAGAGGAGTCGGTGGTGCGTGG 131206 30 100.0 35 .............................. GTTGAGGGTTTGGCAGTGCTGGCAGTGCTGGTAGT 131141 30 100.0 35 .............................. TTCGTCTACGCCGGCCAGCAGTACAACCAGGACGA 131076 30 100.0 36 .............................. CACGTTGGCGATCTCGATAGGAGTCGGGAAACGCCG 131010 30 100.0 36 .............................. GCAGCGAACCGAGTAAGACGTACACGTTCCCGGTTT 130944 30 100.0 35 .............................. TTGTGGTTGTCTATCCAGCAGCGGTCGGGGTCGCC 130879 30 100.0 34 .............................. GTCAGAGACAACTACTGTATGGGACGGCGTTCGG 130815 30 100.0 36 .............................. GACCAGAACGAAGTATTGTGGAGCGACAACAGTCCG 130749 30 100.0 35 .............................. GCGTTGCCCGACCTGCCTCGGTCCGACCGACGAGC 130684 30 100.0 36 .............................. TTCGGGCCGGCGTACGTGAACGCGCCGGAACCGCCG 130618 30 100.0 35 .............................. CGACCATCCTCAACGGGGTTGTCCGACTCGCCGGA 130553 30 100.0 36 .............................. TTATGGTGAACATGGTTGCCCGCCACCGCGTCAACA 130487 30 100.0 36 .............................. TGCGGGAACTCTAGCGCGTCGTTCAGGCTAGTTACG 130421 30 100.0 37 .............................. GTAACGTGAACGACCTTCACACCAATTCCATCCAACA 130354 30 100.0 37 .............................. AATAACAACAGGCAAACGAAGATCCGAGAATATAACA 130287 30 100.0 35 .............................. TTCAAGAGAATAACGTTACGTATGCCGCATATACG 130222 30 100.0 34 .............................. TGGATAGCCGCAGTCACGCCATTAGTGGTTGCTC 130158 30 100.0 34 .............................. CGCGTAGACGTATCCGAAGACGTGGTTGCGGAGT 130094 30 100.0 33 .............................. AGGGCGTCGGCGAACTCACCGCCGTTGAACTGG 130031 30 100.0 35 .............................. TTCCAGGTCGTCGACCGGACCACGAGACAGTAGAC 129966 30 100.0 37 .............................. AGCCTGGAGCGCGGCCTGCCGGAGGATGGCGATAGCA 129899 30 100.0 37 .............................. GGGCGATATTGGTCCGTTATTGGTTGATTTTCAGCTG 129832 30 100.0 35 .............................. GGCGGGCTGACGGAGAGTATCCTCGCGACGCTGTT 129767 30 86.7 36 ................T...C.G......G CACGAGCATCCTGCGTGCCCTCGGGGACCTGGCCGT 129701 30 76.7 0 ...A....A.A..G..A...C.G....... | ========== ====== ====== ====== ============================== ===================================== ================== 51 30 99.3 35 GTTTCAGACGTACCCTCGTGGGATTGAAGC # Left flank : ACACTCGAGCGAACAGTCGAGCACCCGACGCTGAACCGGAAGGTGAGCTATCAGTATCTGCTTCGCTTGGAGGTATACAAGCTCAAAAAGCACTTGTTAACCGGCGAATCCTATGATTCGTTCAAGCGGTGGTGGTAGATGTACGTCATCGTCGTCTACGACATGGAGGCTGACAGGACCCACCTGATGCTGAAGCTCTGTCGCCGATACCTTGTTCACGTCCAGAACTCAGTACTGGAAGGGGAAATCTCGGAGGGAGATCTAGCGACACTGAAGGGGGAAATTGAAGATCTCCTTCAGAAGGGAGAATCAGTCATGGTCTACGAACTCTCTTCGGACCGGCTATTGAACCGTACCGTGTACGGGGACGACCCGACCGAGGATAGTCGGTTCCTCTAGCTGATGTCGACCCCCCGGGGGTTTTGGGGGGATTGCGGGTCGACGGAAATGATGAAGTGTATACCACTGGTAGAGGTGATATGGTGGGCAAAATCACCATG # Right flank : AGAGATATGGGGAGCCTAGAGAACAGCGGAAGTGATGGGGTTGCTAAAATCAGAGTTGTTTATATGCCATAGTTTCAGAGGAAACAACGGAGGTGGGTGGTCGGTGGGTTTATTGTTCCCTCTGTTCCATGTGGGCCTATATGGCCGACTTCACATTTGAACAAGACACCCAAATCTTCCGGGACCGGGACGCCCTCACGGAAGACTACACCCCAAACACACTCGTCGGCCGCGACGACGAACTGGAAGAATTCCACGCAGCACTCCAACCAGTCATCAACGACGAAAACCCCTCCAACATCTTCCTCTACGGCAAAAGCGGCGTCGGAAAAACAGCCGCCACACGCTATCTACTCACCCAACTCCAAGACGACGTCCAAGAAGTCACCGGCGTTAGCGTCACCGTCGTCGAAGTGAACTGCGACGGTCTCAACACCAGCTATCAGACCGCCATCGAGATCGTCAACCAGCTCCGCCCACATGAAGACCAAATCGCTTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 143740-143970 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831303.1 Halobacterium hubeiense strain JI20-1 plasmid pSTJ001, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 143740 30 100.0 38 .............................. GTCGGATTGGTCTCGACCTCGACCGCGAACGGCGGCTC 143808 30 100.0 37 .............................. CAGATTGGCGACCCCGTGATGGACGCCGCGCAAGGCC 143875 30 100.0 36 .............................. CCCCGCCAGCGCCATCGCCGCTCCCGTCTCCGGGTA 143941 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 99.2 37 GTTACATCAGAACGCTAGTGCGGTTGAAGC # Left flank : TAGAGTGAAAAAGGAGAGTCTAGGAACCTCCTCGGAGCCACGATCTGCTGCTCAGATACCATCCGGAAATTCCCCTGTTGGTCGTCTTCTCTGACCGGTATCGGATCTCTATTTCCGCTCCCCTAACAGTAGTTGAACGGACAGAATTTTATTCAGGAATTGCCCCGTAATTAGGAGTGTGAAGGGCATGTGACGCCGTCCACGCTGAATAAATCAATCGTATTTGCAACAACTGATAATCAAACCCTCCTAACGGAGATTAGATTAGCCGCGGCATCAACACGAGCGCGAATGAACTCTCCGGCGAGGAGCACGAGTGATCAGCCTTGGAACTCCCATCGTACCGGCGTCCATACTGCTCGGGAGATCGTATACCCAACAACGACGATACGCGACGATTCTTCATCGACCCCTAGGGGGTTCAGGGTGAATTACGGGTTGACGAAAACACCGAAGTATGTATGGCCTGTAGCACCGCTGAGTGCCCCGTATGGGGCATG # Right flank : TGCACAGTGTGTCGATGGGCGACGCTGGCTGGAGTGTGGACGCGCTACCTACTGCTATCGGATGTTGGAGTTGTCGCCAACCACGATTTGGGAGAGACAACGTGCTGAGGTGTCTGCGACGACGCACTCAACAGGTCGTTTCGTGTGGTTGGCGATGGTCAAGATACTGCTTTGAGGTTACCTAAGGATTTTGATTCGGCAGACCTCTCGTCGGTATTGAATGTGCTCTTGTGCTTCTGCTATCGTGGCCGGTCTTCTAGTTCATCGCTGTCGACACCGGTTTTATAGTAGTCGTCTTCGATTCGGGAATCGCCTCAGAGTCAAGCTCTGAGGCGCTCGGCCTGCGACGCTGATGACTAGACCTTTTCTCAAATTTTAGAATGACGATGTGACGATACGCCAAAACAAATAACGCACACACAATCCAGGGTTGATTCGTCCTATGACAGACCCTAGTGAAGAACACGACAGTCAATCCAACACCGGCTACATCGAACGCT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 178656-178429 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831303.1 Halobacterium hubeiense strain JI20-1 plasmid pSTJ001, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 178655 29 100.0 38 ............................. CCTGCGTGGCTGTTCCGAATGGGTAGCTTGTAGGCGGC 178588 29 100.0 36 ............................. CGCGTCTCGTGGGCGTCGTCGTTTCAGGCCGCCGTC 178523 29 100.0 37 ............................. TGGTGAGTGGGCATGGCTGGTGGACTTCACGCGGCGG 178457 29 96.6 0 .......C..................... | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 99.2 37 GTTACAGTAGAACGCTAGTGCGGTTGAAG # Left flank : TGAGAATATGGACTTTAGTGCCTCTGCTCCTGCTGTTAAAGAGCAAAATTGGCTTACTTACAGTATGGACGAGACCCAAGAATTCAAAGAAAACGTTAATGGAATATCTACGAAATATAGGTATTCAATGGATTCTGATATGACTCACTCTTTTCAAAAATTAGAAAACTCTCCGTTGTATGGTACTATTCTGGATATGGGCCAAAATATACAGGATATGAAAGAAAGGAGCGAACCAGAACACGTGGAGAAAGAGACTAAAAAAGTCGGGCCGTTTGCGAGCGTTTCTGTTGAGCGTCATATAGACATCCTCTGCGAGATAATATCATATTATGAGGATGATGACGCTCCAGAAACCCCTGTATTTGAAAATACCAGTCTACACAATTCAAACTTCGCCCCAGCGATAGGCAGCGCTCGTTTTGACGATGTTCCGTCGTGGGCTGAAGAACTACGCAACCGCGATGACCTGTAACTGAGAGTAGAAGGGGCCTAAGAGA # Right flank : CGACGCGTCCCGTTGGAACGTCGCCGCGTCCTTCCCACCGTGCGGAAGGTGCGACGGCGGGCATCGGGGGCCGTGGACGCCCCGACCGTGACCCAATCGACCGTTCGAGGCTATCAGGCCGATGGTCGGATGGGAGTGTCCGACTAACCCACGGGAAGCCTCGGGGCTTGACCCCGAGGCGGTTCACTGTCTGGGGATGGCGTCGACGCTCGACATCGACCTTGAGCAGGCTGTCGAGGAGAAGCTAGCTGCCAACGAGCAGCGATTCGACGAGGAGGCCGCCGAAGAGATCACCGAGCAGTTGCAGTCGTATCAGCGCTGACTACGCCGTCTCGAGGTCGAGGTCGGACTCGATGTCGTCGAGCGTCTCGATGAGTTCGCGGTTGTACTCGTTGCCGTCCTCGCCGTTGTGGACGCGGCGGTGGCAGGTGGGGCAGAGCGCGATGACGGCGTCGGGCTTGTCGGGTCCCTCGTCGCTGACTTCGAAGACGTGGTGGACT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGTAGAACGCTAGTGCGGTTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 4 188927-185156 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831303.1 Halobacterium hubeiense strain JI20-1 plasmid pSTJ001, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 188926 30 100.0 33 .............................. TACCCGCTCCCGCACCATAGTGGTTTGTTGGAG 188863 30 100.0 34 .............................. CCGCGACGGGTCGGACAACCCAGTGAACTGGGTG 188799 30 100.0 35 .............................. GGCCAACGCTTGAACGTCGCAGAGACGTGTGAGAA 188734 30 100.0 37 .............................. CAGCCGCACTCCGAGGAAGCGGTCGTCGAGTGCGTGT 188667 30 100.0 36 .............................. ACGCCGGGAATGTCGGAGACGACGCGGCAGATGCGG 188601 30 100.0 37 .............................. AGGATACGACGAAGGAGATTCGGAAGTCGCTGGACAC 188534 30 100.0 35 .............................. CGCTCAACGCGGTTCCGGTTGATGTACCGTGCGTA 188469 30 100.0 35 .............................. ACGAACAACAGCGAGGCCGTCGACGAGTTCATGGA 188404 30 100.0 37 .............................. GCGAGGCGCGCGAAGAACTCGAAGAGCGGTGGGGATT 188337 30 100.0 34 .............................. TCGTCGCCGTCGTCGTCGCGGGCGACGAACTCGA 188273 30 100.0 34 .............................. GACATCCTCGACGAGGACCTCGCCGAATCCACGC 188209 30 100.0 37 .............................. GACGTGATTCGGCGGCATCAGGATGGCTTCGCCGGCC 188142 30 100.0 35 .............................. ACGGCAGTCCAGTAGTGGCTAGCCGTTTCGCTGGC 188077 30 100.0 34 .............................. AACGCTGGCGGTATCCGACGCGGACGCCTCCGCA 188013 30 100.0 36 .............................. CTATCCGAGGCTGGCGTTCGTGAGGGAGTCGTTGTG 187947 30 100.0 37 .............................. AGCGCGCGGGCGGTGACGCGGTGACGAAGACCGTCTC 187880 30 100.0 38 .............................. ACGGAACCGAACGACTCCGGGCAACCGTCGCTTGAACT 187812 30 100.0 33 .............................. CCGTGTGACTGAGCGCGTAGGAGACGACGCCCG 187749 30 100.0 35 .............................. CGCGACCTACTACAAGCCGAATGGGTCGCGGCGAA 187684 30 100.0 37 .............................. GGTTCGGCCGGGGCGACGTCGACGTCACCGTGCCCAC 187617 30 100.0 37 .............................. AACGGCTGGTCGGGTGTTGTGGACACTGACGAGGGTA 187550 30 100.0 33 .............................. GGGAATCACGCCGTCCTCGATGTCGACCGCGAG 187487 30 100.0 47 .............................. GGCCCGGGGACGCTCCGGGCGGCTCGCGAGGCGTGGGAGGGAGACTC 187410 30 100.0 34 .............................. AGGACCTGCCCGCTGGACACGCGCAGCGGCCCCT 187346 30 100.0 36 .............................. AGGAGATGCGTGGGACGCGTGTTGAGTTCCGTGGGC 187280 30 100.0 35 .............................. GACTCCTCGAATATCCACTCGGCGCTCTACCAGAG 187215 30 100.0 37 .............................. AACCCAACGCTCTCAGAGTATTGGAGTTCCCAAATCA 187148 30 100.0 35 .............................. GCGTCGCCGAGCTGGCTCATGCGCTGCTCGACGTC 187083 30 100.0 36 .............................. GGTCGAACGTGAATGGTATCGGTGAAACGGACTGTA 187017 30 100.0 36 .............................. CGGAAGCAACAGGTGAAATCGGAGTACCAGCAACTC 186951 30 100.0 34 .............................. AACCTCTACCTAACCGTATACGCGGACACCCCTT 186887 30 100.0 38 .............................. GTAGCCCTCGCCCGACGCGCGGAGCTGGGGCGCGTCGA 186819 30 100.0 34 .............................. GATGACGTCGGAGGTATATTGCGGCGTGTCCGCG 186755 30 100.0 35 .............................. GGGAGGTCGGGGCCGACCGTCTCGAAGGCCATCGC 186690 30 100.0 37 .............................. GGGAGGACGCCATCCGGCGCGATCTGGACGTCCGGCG 186623 30 100.0 38 .............................. GGGATGAGGTTGAAGTCCGAGAACCACTGCCTCGCCTC 186555 30 100.0 36 .............................. GAGGTATACGCGCTCAAGGGCAGGCTCGATGGCGGT 186489 30 100.0 36 .............................. GCCGCGATGATGCGCGCCGTCCTCAGTCCGGCGCGT 186423 30 100.0 36 .............................. GCGTTACGGCAGACGATGGGGAAAACGAAATCGAAG 186357 30 100.0 35 .............................. ATGGCTACGGTCGAGCGACGCCCAGGAGAACCGCA 186292 30 100.0 35 .............................. CTGTACCGACTAAAAACATCCGGCTATAATCAGCC 186227 30 100.0 35 .............................. AAGTACCTGCCTGCGAAGCCGGAAACCATCGGCGT 186162 30 100.0 36 .............................. TTCTCCGAAGGTAGGACTAAGGGGCTCGGTCGTGGC 186096 30 100.0 35 .............................. TACCCTTTACCGCGCATTGAATGAACTCGAGGAGC 186031 30 100.0 35 .............................. GAGAGTGAGTCTACGGAGCTGCCGGAGTTCGCCGC 185966 30 100.0 36 .............................. TGCAGCCGCGTCCAGCTCGCGGAACGAGAACGACGT 185900 30 100.0 38 .............................. ACCCAGGATTCGGAGCTGTGGCAGATCTCTCCGGCGCG 185832 30 100.0 35 .............................. TATCAGCTCGTCGACGGCGAAGCACACCAGATCGA 185767 30 100.0 34 .............................. GATTATGACCCTACGCGGGTTATGATTCGCGTTA 185703 30 96.7 35 .............................A GCGGACCTCGAAAGCCGCAACGGCGCCCGCTGGCA 185638 30 100.0 35 .............................. ATATTCGGGGATGATAGGCAGCACATCCAGCAGTT 185573 30 100.0 34 .............................. GCCCCGAACTTCGAGGCTGCGGGCGACCGCGACC 185509 30 100.0 35 .............................. CGCGGGTGGGACAGCGCCGACAAGCAGGCAACTGT 185444 30 100.0 34 .............................. CGCGTTCGCGCGCAGAACTCGCATGGGGAGTCAC 185380 30 100.0 36 .............................. CCGAACCCGTATTCGCGGCCTGAGCGGCCGGCGGCA 185314 30 100.0 33 .............................. CCGAGGTCCGCACGCTCGCCCACTTCCAGCACC 185251 30 100.0 36 .............................. GGATGCTGTGACGGGCTGGGGGGCGGCGGTTGCTGG 185185 30 90.0 0 ..................A.......C..A | ========== ====== ====== ====== ============================== =============================================== ================== 58 30 99.8 36 GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Left flank : TCGCGCACGTCCTCGTAGGTGTCGTCATGGAGCGTGGTCTTGCTCGTGGTGACGTATTCACCGTCGAACGCGTGGCGTGTCACGTAGTTGGCGGCCCACAGAAATTCGTCGACGGTGTCTTCGAGGAGTGCGGCGCTGTGGCTGTCCACGTTGAGTGCAATGGGGACAGTACGCCGCTTCTCCATACATCATATGTAATCTTGGTGATTAAAAAGTATTGGGGAGTCGGCCCTGCCGTAGTCGGTGGTTGGATACACGGAGCGTACGCGCTTCCTCCCACCCCTAAAGGGGTGGGTTTCCGCGCTGTACCACTACGAGTGATTAGCCACGGAACAGCATCGTCCCGCTGGCCACACTGACTCGGGAGAGCGTATTCCCAGCGACGCGGAGACACGACGATTCTTCATCGACCCCCGGGGGTTCAGGGAGTATTGAGGGTCGACGGAAACACCGAAGTATATCTGGGCTGTAGCACCGCTGAATGCCCCTAATCGGGCATG # Right flank : TTCAGGATACTGCTGTCGACGGGGGCCGAGCGAGACGCAGCAAACGCGTAGCGGACTGGTTTTGCTTGGGTCGGTGCTATCCATTTTCGCCCCCAGTATTAACCAACACTAGCCGAATATTGCGGTAGATGTTGGTTAAGTCCGTGTTAGCGGAGTGACTGCGAGCTATTTGAGCTTCTCCAGTCGTTTGAACAAGACACACTGAGGACACGTGTCTCCACGAATCAACGTTTGAACGAATTCCCCCTCCAATCTTTCCAACGGCTCGTTCACACAGGATCGGTCTCGTGTGACATTAGGGAAACTCGGTCTCTTAGCGTGCAACCCCCCGTGATTTGTGGAGCGTGGGCTAACAGTTTCGCTTAAAGAACCGAAGCCACACAGGAGAGAAAAATTAGGTGTGAACGCTAAAGGTTGGAGAATCGACTACGTAGGGCTTCGTATGCGCTACCCAACGGTCCGCGACTTCCTTCGACGAATTTTCCGGATTCGTCGCGGTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //