Array 1 14151-14477 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASE01000025.1 Gilliamella apis strain NO16 NODE_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14151 28 100.0 32 ............................ ATCATTGCGAAGAGCGAATGCCAACATCCATG 14211 28 100.0 32 ............................ TATTAATATTTTTTATTACATCATAGTTTTCC 14271 28 100.0 32 ............................ TTGATTTACACAAACCTGTCACGTTCGCAATT 14331 28 100.0 32 ............................ TAACGGTTCACGTGTTTACGTGCAAAAATCAA 14391 28 89.3 32 .......G...CA............... AATTTTATTTGAAGATACGCCGAGCAGTTCGC 14451 27 85.7 0 ....................-CC.A... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.8 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : CTAAATTCTATTTGCAGTTCAAAGTACCGCGTTACCAAGATTTGCCAGCTAGCAAGTTTGACGAGGCTATTAAGTGGTTGGGTGGTGTAAGCATGAGAAACGGGTTGTCTGATGAAGATTGGTACGATTTAGCTTGGCTTTATAAAGTAGCAGATAGGATGCGTTCTCAAATTGAGCTTATCGAGCCAGCCCTTAGGGCAATTGATTCTAGTTTTGTCAGTGCATTTCACTCTATGTCAATCGAGTACAAACGAAATTTACATAGTGCAAAATTAATTATTGAGCGAGAAACAGCGCATATTAAAGCAAAAAATATAATAGACAAATGGAATAGGGTTTTACCTGTAATTAGACATCATTAATTAGTTAACCCTTTTTTTGCTGATTCTTATAATTCATTTAAAATCAAATGATTATAAACAGGTGTAAAAAAAGGGTTTTTAGCTACAAATTGGTTATTATTCTTTTTCTGAACAAAGTTTATTGTGTATAATGTTCTA # Right flank : ATTCAAAATTAAAACTATCACAAACCGCCTTCTGGCGGTTTTTTATTGCTCATTATTCCGCAAATCAATAACAGATTTAACGCTCACATGAATAGCTCGACGGAGCAAAAGCATGAAGCTGCCTACCTTCAGTGGATTGTTTTCATGTGAGCTTTTATTAAAAAGGTAAAAGGAGTGATTAATGAATAATTTAAAAAAATTATAAGTCCCATTTTGCAATACAACAATCCAAGCCATTGAGCATAATGGACAGCTTTATGTTTCAATGCGCCCCATTTGTAAGAATATTGGTTTGTAGTGGGGATCTCAGTATAACCGTATCATGCGTGACGAAGTAATGAAAACCTGCGTCTTCATTATGAAGACTGAGATTCTATAACCCTCTAATTTCTTCTTGGTTTATTAATAATATGAAAAAATCCATCACCTTTAAGAGATCATTTAATGATCAACTTATCGAAATATTATGCTATTATTCTGACGATAAAAATAAACAGGAT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 158419-158151 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASE01000001.1 Gilliamella apis strain NO16 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 158418 28 100.0 32 ............................ GCCGCCTTGTTTTTTAGTGCGTTTTTTAATTG 158358 28 100.0 32 ............................ TTCACGGCGTTTGCTCGGTATTAATCAGCACG 158298 28 100.0 32 ............................ TGTCCCTGCGGTGAATTTAGGAGGTAATTATC 158238 28 100.0 32 ............................ ACATTGTTACATTTTTATTTATTTCTTTTTCT 158178 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : TCAGCTAGTTCCAATAATTAAAGTGTATTTTGGCAAATAAGTATGGTGTATTTAATTTAGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCTGTGTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTATTCACCGTATAGAACTAGCCACCAAACAACAAAACGTCCGAAACTCAAACAACCAAAAATTTTGAGGAACGGGGTTTTTAAAACTTAAATTCCTACTTATTGTTAACCCTTTTTTTTAACTTAAAATAAAGTATTTAAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATATAAGTGGCGGTATAGGTAATATCAAGTAGTACACCGCTTATTGAGTAGGTTAAAAATAGTGATTTTTTAAGAGGGGATAAAGGGGATATTATTTCTAAAAAACAGCAAATAATCGATGCTGTTTTCGAGCTATCAGTGTTCATCTTTACAAAAGTTAACAATTAAACCGTCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACTTATAATTTCACCTCTCTAAAGTTAAGCTCACATCGTTTATTATTTCACTGCAATTTATTATTTCGGCAATTTCCGCAATTCTGGCATAATTTTTCAAAATTTCTTGGTTTAGTCTTTTTATCTCGGCAGATGGTTTTGGTATTAAC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6382-7571 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASE01000030.1 Gilliamella apis strain NO16 NODE_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6382 29 100.0 32 ............................. GTAATGTCACATTTAGTACATTCGATGGTTCT 6443 29 100.0 32 ............................. TTGCTAGGTTGGACTCCACAACATGCAAACGA 6504 29 100.0 32 ............................. CATAAATTTGCACGTGTTGATATGGACTATAC 6565 29 100.0 32 ............................. GATGCAACAATGCAACAGCAAGATTTTTATAT 6626 29 100.0 32 ............................. TATAAAATGCACATTATACAAACAACATCAGA 6687 29 100.0 32 ............................. CAATTAGTTTATAAAAATTCTCTAAAAAACAT 6748 29 100.0 32 ............................. TGCCATAAAAATGCTCCAATAAATTGATATAG 6809 29 100.0 32 ............................. ATCGGTTTCGTTACCACCGTTTTTATACCGTT 6870 29 100.0 32 ............................. CTAGGCAACACGCAACCTAAGGACAGGTTACC 6931 29 100.0 32 ............................. GCAATTCAGAGAACTATACAAAGAAAAACGCA 6992 29 100.0 33 ............................. CGCATTAATGGTAAAGATAAACTTGTTTTAGTC 7054 29 100.0 32 ............................. GGTTTAGTATGAGTAACGATATGGAAAATAAT 7115 29 100.0 32 ............................. TGGTTGGGTGGAGTTACAAAAGCAAGAAAAGA 7176 29 100.0 32 ............................. ATGTGATTGATCTCGACATGTCAGAAGATGGC 7237 29 100.0 32 ............................. CGAATTAATAACTACCTCAGTCGTGTAGTGGT 7298 29 100.0 32 ............................. CCGTCTTTGATTTGAAATGTTTTAGCCCAGCC 7359 29 100.0 32 ............................. GCTTATACAGTTTATATAAAAGGCCCTACTAA 7420 29 100.0 32 ............................. ATGTGCCATAGCGCCGCGAATATCAAAGGCTA 7481 29 100.0 33 ............................. TCTTCTTTATAATTTGCCGATAGACTGTCTAAC 7543 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.7 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTATCTGCTGGTGGAATTGAACCGCCCCCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCTCCAAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAAATATCTATATTTAGA # Right flank : TTTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTCTAATGATAGCTATTTATAAAAATAAAAGTTAATAATCATATGCATAGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAATATTAATCGTAAATTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCAGGCAAAACAACAGCCATCAATACTGTTGCACGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACTCGCGAACCTGGCGGTACTCCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACTGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13058-12608 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASE01000036.1 Gilliamella apis strain NO16 NODE_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13057 28 100.0 32 ............................ ATTGATGCTGACAAAATCAGGTGATGTAACCA 12997 28 100.0 32 ............................ ATTCGGGGGCGCCGGTAGTGTATTGTTGTTAA 12937 28 100.0 33 ............................ CTGCTAATGGTACCGATTTTATTAAAAATAAAA 12876 28 100.0 33 ............................ CTCCTCAAAACCTGTTGTAACATACTGTATTTT 12815 28 100.0 32 ............................ AACAATCAAAAAGCCTGTTACTAGCAGGTTTT 12755 28 100.0 32 ............................ GATGGAATAATTCCATCGGAGGGGGATTTGAA 12695 28 100.0 32 ............................ TACCCCGCCTAGAGCTTTACCAATCGCTTTAC 12635 28 92.9 0 ....................TA...... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : CATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCGCAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAAATTGAGGAACGGGGTTTTTGAACCTTAAATTCCTACTTATTGCTAACCCTTTTTTTTTGACTTTAAATAAAATAATTAAAAATCAATATGTTGAAAAATAGCTTAAAAAAAGGGTTTTTAATAGTAAAATTACGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATCCGGCTCT # Right flank : TATAGTAAGTGGCGGTATAGGTAACATCAAGAAGTACACTGCTTATATAGCGGTTTAAAATTGATTGCCTAGTGATAAATAAACTGACAACAAATTAAATTTATCTATTTAAAAAATCCTTAAAGCAAATTACTCCCTCAAAAATTGAGAAGAGGAGAGAATTGCTTTTAATCCTATATTGCTTAGTCTTTCTGGTTAAAAATTGAATCTATATCAAATTAGGCTATAATGCCGCATCGTTTAATTTTTATTATTAAAAATGAATATTGGTTTTATTGGCGCCGGTAAAGTGGGTTGTAGTTTGGCTAAATATTTCAGCCAATGTGGTTTGCCAGTCGTTGGTTTTTATAGCCGTGATGCACATCAAGCACAAGCAGCAAGTGATTTTACGAATAGCAAAGCATATTTAACTTTATCTAACTTAGTAGAGGATTGTGATTGTCTATTTTTGACTGTGCCGGATAGTCAAATTAGCTCAGTTTGGCAAGTGGTTAGTCGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 46834-47160 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASE01000013.1 Gilliamella apis strain NO16 NODE_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 46834 28 100.0 32 ............................ GATAGCATTTAGAAAATCGCCGTCATCTTTAT 46894 28 100.0 32 ............................ TATCATTTGCGATTCTATTTGTGCCAGCAATC 46954 28 100.0 32 ............................ AACATATAAAGGTTGGGAAAATGCCATTAATT 47014 28 100.0 32 ............................ ACTTGAGCGCATCGGCGCACAATTTAATAACA 47074 28 100.0 32 ............................ ATTTCACTAATTGAATTAATGGCTGTTTTAAA 47134 27 85.7 0 ...C...A............A..-.... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTTACTGCCGTGTAGGTAGTTTAGAAA # Left flank : TAAGAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAATGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCTGTGTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGGCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCACAAAACCGAAAACGTCCGAAACTCAAACAATCCAAAAAATAAAGAACCAAAAAAATTTGAGGAACGGGGTTTTTGAAACTTATAATACCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAAATCAACACCTTGAAAAATGGCTCAAAAAAAAGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACAACATTTATAGTATATCGGGTTCTA # Right flank : ATATTAATTATTTCTAAAAAGATTAGGAAAAATTTTTCAAAAAGCTAAAAATCCAAATTAGTTATAGCTTTGTTAAATAAAAAAAAACCCAGTAATTGGTTGTCCAACTATTGGGGGTCACTTCAAGGAACGGTTTTTTATTATTGGTTAGATAATTTTACAATTATCCTTGGTATTTTTTCATGACAATTGATGCATTAGTACCGCCGAAACCAAAGCTATTAGACATTACTGTGGTTAATTCACGTTCGGTTGGCTCGGTAATAATATTCATGCCTACTGCTTCATCTGCAAGTTCGTCAATATTGATACTTGGTGTAATAAAGCCGTGTTCAAGCATAAGTAGTGAATAAATCAATTCTTGTGCACCGGTGGCACTTAATGAGTGACCAGTCATGGATTTAGTTGAAGAGATAGCCGGGATATTATCACCAAATACTTGTTTGATTGCCCATAACTCTTTGACATCACCAACTGGCGTTGAGGTACCATGAGTATTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1334-1068 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASE01000037.1 Gilliamella apis strain NO16 NODE_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1333 28 100.0 32 ............................ TAATGTCATATTTCTAAACCACCTATTCGGCG 1273 28 100.0 32 ............................ CCACCCCAACGCCTCGCAATTGGTGGTTGTTG 1213 28 100.0 32 ............................ CAGATGACATTTCTTTTAACGTCTTACCTGAT 1153 28 100.0 32 ............................ ATTATGTTTTGACGTTGAGCAACCGAAGGGCG 1093 26 85.7 0 ...................--.A.A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 CTTCTAGGCTGCATAAGCCGTTTAGAAA # Left flank : CGAAAAACGTTTAACCGCACAAGGTAAATGGTCAGCCGAGGTAAAAAGCAAAATGGTTGAAAAATGGGGTAGCATTCATTTGAACTATCCACACCTTCATTTTGCTAGTAAAAGCACAGGGCAACATTTTATTATGTGGCTGAAACAACAAAAATGTGCAACGGCTGTTCAAGGTACATTTAATAGTTACGGACTCAGCAAAACTGCTACTGTTCCTGATTTTTAACTAAATAATAAGGGCATTATTATAATGCCCTTAACTGCCAATATCTAACCATATTAACAGCATAAATTTTGAGGAGCGTACTTTTTAAAGCTAAAAAATTTGAGGAAAGGGGGTTTTTGAAACTTAAATACCATGCAGTGTTAACCCTTTTTTTTAACTAAAAATAAACTGTTTAAAAATCAATTAATTGAAAAACTACCGAAAAAAAGGGTTTTTGCAAAGTAAAATAGATTTTGCCTTTTGCATAACGATGTTTATAGTATTTTGGGTTCTA # Right flank : TTTGAGGAACGGGGTTTTTTGAGCTTAAAATCCTTAATAACTGAAATGATCTGAATAGGTAAAAATATCTAAAACTAGGTAGGCAAGAATTATGAAATAAGGTTTTTGCGGATTGATGTTGTTGAGATTAAACTTTACAAAAGTTAACAATTTAGATTCTAAAATCAGTTGCATAGATTATTTTCAGTCACTATACTTTTAGCGGATTTTAAGTACAATAATCGGCTGTTATTTAGTCAAATTAACTTAAAAAAACCAAATAAAACATGGAATTACTTGACAAGGTTGTTGTTATGAACTATAATTTTAAACACCAAACACCAAACACCAAACCTGCCCAACTTATACTTTAAATTCATCTCGTTATTGCAATCAACGTTTAGTCTTTTCTAATAATTTATTTTTTCCTCGATTTTTAAGGTTATTTTTATTTTCGCCGCTTTTTAGCGTTTTCGCCGTTACTTTAGTTTTATTCTTTTCATCAAGTAGTTATGCACTAA # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAGGCTGCATAAGCCGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 11060-10852 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASE01000037.1 Gilliamella apis strain NO16 NODE_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11059 28 89.3 32 ...T...G.T.................. TGCGCAACTTCTTCTAATCCAAATCCTTGCTC 10999 28 100.0 32 ............................ GCAAATTAACCTTGCTGTATGTTTAGCCCATG 10939 28 100.0 32 ............................ CTAAGTCGGAATCATCGCAAACATTGATTATC 10879 28 75.0 0 .................C..CAA.ATC. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 91.1 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : TTATTTCTTAGTTCTTAGGTATTAAAGCTGAGGATAAGAAAAATAACGTTAGGGGGATAAAGAGCGCTTTTGTGGTGCGACATTCGCAATGTGCTGATAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAACAGCGAACGCAGGCAGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAACGTCCGAAACTCAAACAACTAAAAAATAAAGAACTAAAAAATTTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCCTTGTCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TTTGTATCATCTTTTGGATAATTATAGTTATTTTAAAAAAGATCGTTTTTTACACAAAGTAATGTTATTTTATCATCATTATAAATTGAATTTACTGTCTAAATATCATGGATTTGATTCATTCGTCTGATCTTAAAACCATTTTACATTCCAAGCGTGCAAATATCTATTATTTAGAGCATTGTCGAGTTTTAGTCAATGGTGGTCGAGTTGAATATGTGACCGATCAAGGGCAGCAGTCATTATATTGGAATATTCCAATAGCCAATACCAGCTGTATTTTACTTGGTACAGGTACTTCATTAACTCAAGCTGCGGTGCGTGAACTTTCTCGAGCAGGAGTTATGATTGGCTTTTGTGGGGGAGGGGGAACGCCTCTATTTTCCTCGACAGAATCGGAATTTGCCTGCCAATTCTTTTCACCGCAAAGTGAATATCGTGCAACCGAATATCTGCAAAGTTGGTGTCAATTCTGGTTTGACGATAATCTCCGCCTACAA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 507-239 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASE01000054.1 Gilliamella apis strain NO16 NODE_54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 506 28 100.0 32 ............................ GATTTGTGAGCCAACGGTTAGTTTTTCTATCG 446 28 100.0 32 ............................ ACATGTATCGTTTTAAACCGTTCTAGCGATAT 386 28 100.0 32 ............................ AGTCAGCAGAAACGGTGCGAGTTATTGATAAA 326 28 100.0 32 ............................ GTGATAGGGTTCTGGAATAAAAACAGTTATAG 266 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : GACGTGCGTTAAGAGCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCACAAAACAGCAAAACGTCCGAAACTCAAACAACCAAAAATTTTGAGGAGAGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATTTTTAAAAATCAATACGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACAACATTTATAGTATATTGGATTCT # Right flank : ATACACCGCTTATTGAGTAGGTTAAAATGGTGATTTTTTAAGAGGGGGATAAAGGGGCTATTATTTCTAATAAACAGCAAATAATCGATGCGGTTTTCGAGCTATCAGTATTTTCTTTACAAAAGTTAACAATTAAACCATCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 57178-56730 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASE01000015.1 Gilliamella apis strain NO16 NODE_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 57177 28 100.0 32 ............................ CTGTTCGGCGGTAATTTCGAAATAATTAAATA 57117 28 100.0 32 ............................ CATAGCCAGCATGTGCTTGGTAATGCATCGGA 57057 28 100.0 32 ............................ TGTGGTAGCGGTCGGCAGCGGTGAAAACTATA 56997 28 100.0 32 ............................ TCAATTGATGAATTGAGGCTTGCTGCCAAAAA 56937 28 100.0 32 ............................ GTTATGACTACCACCGACAAAAACCACTCGTT 56877 28 100.0 32 ............................ TGCCGAGCATAAATGCTTAAATAACCGAAAAG 56817 28 92.9 32 ............G.......T....... TCGAGTTACAACTCCTCAAATTGCAGAACACG 56757 28 67.9 0 .......G....G....CG.T..TTTT. | ========== ====== ====== ====== ============================ ================================ ================== 8 28 95.1 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : CCCATCCAATAAATCGTTAACGTTAGTTATAACATCAGCTAATTCCAATAATAAAAGTTTATTTTTATCAATCAGTTTGATGCTTCTTATTTAGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGAGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCGCCGTATAAAAACAACCACAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAATTGAGGAAAGGGGTTTTTGAAATCTAAAACATCCTACTACTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATGGGATTCTA # Right flank : TGCCTGTCATTCGACCACTCAGCAGATGAAGTAACCAAACTTTTACAAAGAGCTAAAATTATCATTGATGTACAAAAAAGCAACGATAAGCTACGTAAAAATTGTAGGTAAGGATTATTTTAAAGATGATTATGAGAATGGAAATTTGTTTCAATATTGAGTGACCTTGTTTGTTGATTATGAAGCTAAAAATGATTTTGGTGTTGATTTAAAAAACACTTCAATATGTTATTTTTATTCTATTTTAATAAGGAATGATTATTTTATGTTCCCAGATTTTGATAAAATGGCGATCTCAAATAAAATATATAGTTATATTGATTTAATGGCATCAATAGAACATTTTCATTCTTCTTTATTTGATATTGGAAAAATAAGTATTGTCGATAAAATATCGTACCAGATTGATAAAAATAATTTCCTCTATTATGAGAATGATTGAATTAATAACTTTTATTGCACTTGGCTAACAAATTTTATACTATCTATCAAAATTATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 11709-12164 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASE01000016.1 Gilliamella apis strain NO16 NODE_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11709 29 100.0 32 ............................. CTTCTTTTTCTAATTTTAATCCATCAATTCAA 11770 29 100.0 32 ............................. GGTGAATTCGTTTTTACAAAAGAAGCAACCAA 11831 29 100.0 32 ............................. CCATTTGATTGGGTGCTAGGTATTAGCTGGAA 11892 29 100.0 32 ............................. CGCATACAAGATGCCCCGTTTTGTCTAATTCG 11953 29 100.0 32 ............................. GAAAACGGTAAACGTTTCTAATAATACTATGA 12014 29 100.0 32 ............................. TTAGCCGAGGGGTATAACCATTTGGCTAAAAA 12075 29 100.0 32 ............................. CCGGTTATCGAACTGCACGAAAATATATGGGG 12136 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : GGACAAAGTTCACAAGCTAAAAGTATTATATTGAATTTTAATAAATGCTATAGCCGTGAACAGTTCAATGGTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAAAGATAATATTGATCTTTATTTAGCATATCAACAAGATGGAAAAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATGTTACAATTAGTGCATCTAAATGGGCTAGAGTTAAAAAAGCCGTCCCACAACTTGACGAACAGCCTCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTGTTAATTGAGCCAGAAAAAGAGCCTTCTTTTTATTCTAAGGAATTAGGCTTTTATCTAAATTAATTTAAAGTTAAATATTAATAATTTTAACTTGCAATAAGTTGAGTGAATTTCATACAGAAAAAATCGGTAAAAAATTACTCCCTTATATTTCAATTATAAAACAAATGGTTATAATTAGG # Right flank : TTATTACTGGCTAATTCGTTAAAACTGCCTGGCTAGATTTGGGTGAGGATGGAATACTTTGATCATCTGCAAAAATCAGTAGTTCGCCGTCGCTATATCTAACGTTTTATGATTGATGGTGAGGTTAAGCCAATGTTAGCTGTATTAGAGTATTTAAATGAACATAAAATAAAACCCAACCGCCGACACGTTGGGTAGGCTGCGCGTGGGATTGGAGGTCCTGTCGGAGACTGCCCGCGAATACCTTTTAAATAGTATAGGTAAAAAAATGACTGGCGTAAATATTGAATTCAATGTACAAGACGCACTAATCAACATAGAATTTGCTTTGCTCGATACACATGGTTTATTTAATCATATAAGTAAAACATTACTTGATATTCATGAAGCACGCTTTAATACACAGGAATCACCTGATGGTATACACCATGGCAAGCATTATCACCATGGTATCAAGAAAGTAAGCCAAAACAAAAAGATAAAGCTTAAGGCTCGATGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : GGTGTTCCCTATACACATAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17321-16923 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASE01000009.1 Gilliamella apis strain NO16 NODE_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 17320 28 100.0 32 ............................ ACAAAACCATTTCTACTCACTAGTTAGCGGTG 17260 28 100.0 32 ............................ ATTCCGTTAGGTGCTTGTGTAGAATGACCGAA 17200 28 100.0 32 ............................ TGCGGATATTGTTATAAAACATTCCGATGATA 17140 28 100.0 32 ............................ ATACACCTCTTGCCACTCTTGTAATTGTGCGG 17080 28 100.0 32 ............................ TAAAAATGGAAATATTGTTTCTAAATATAAAT 17020 28 100.0 42 ............................ TGATAAGAAATGATAAGAAGAAAACTAAGAAAACCAAGAAAA 16950 28 78.6 0 .................CTTT....TT. | ========== ====== ====== ====== ============================ ========================================== ================== 7 28 96.9 34 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : TCAGCTATTACTGATAATAAACGTTTATTTTTATAAATTAGTTTAGTGCTTCTTATTTAGCGACATTCGCAATGTGCTGACAACTGCGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTAGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTATTCACCGTATAGAAACAACCGCAAAACAACAAACGTCCGAAACTCAAACAACCAAAAAAAAATTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTATTGGTAAAAATAGACTTTGTCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : GTAATTAAAATGGATTTTTAGTATTTAAAACTCGCTGTTCTCAAATTTATCTATGAAATAATTAAAACGCTTATATAAGCGTTTTAACTCTGATTAATATCATTATATCTACTATAAACTATTAGAACATTAATAGTTGTACAATTAAATTGCAGTCATATAGACCTGATTATTCAGTAAGTTTTTAGGATCAAACTGTTGTTTAATTGCACGCATTAATTGGCGATTTGCTTCAGGAATGGCAGCATTGTAATAACTTACTTTCGCCGTTCCGATGCCATGTTCTGCTGAAGGCAATCCTCCAAATTCAAGACATTTTTGATAAAGCGCTTGGTGAACATTTTGCAGATCAGATTGCCATTGTTTGTCATCACGATTATCACGCAAAATGCATAGATGAATGTTACCATCACCAGCATGACCAAAGGCTAACATGCGCATTTGAGTTTGTGCTTCTAGCTGTTTGGTGAAATTGATAAAATCGCTAATGCGATTTATTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 80310-80103 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASE01000009.1 Gilliamella apis strain NO16 NODE_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 80309 28 100.0 32 ............................ ATTCTCCTAGGCCTAAAAAGAAAAAGGCTAAC 80249 28 100.0 32 ............................ GTTTAGAAAGCATTATGATTGAATATTTCATA 80189 28 100.0 32 ............................ AAACGAAATAACGGCTAGACATTGCTCATTAA 80129 27 96.4 0 ...................-........ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGTATAGGTAGTTTAGAAA # Left flank : CTTATTTAGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAAAGCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTAAAACAACCAAAAAATTTTGAGGAAAGGGGTTTTTAAAGCCTAAATCCCGCCAATAAATCGTTAACGTTAGTTATAAAATCAACTAGTAACCAAAAAATTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTGAAAATCAATATATTAAAAAATTACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTAACAACTGCATTTATAGTATATTGGATTCTA # Right flank : TAATATTGTATAAATTAAAAATCCAGTAGCTCAGGGTTAATACCTAGTGCGCTAGCTATTTTAATACGTGTTGCTTTCCTTAATTTTTGACTTTTTTCATATTGAGAATATGCAGATTGACTGATACCGATTTTATTGGCAACTTCAACTTGAGATAATTTTAGATATTCTCGCCATGCTTGAACTGGTGAATAATTATTATCAAAAACCAGATTAACAACTTCGTTGGGCACACCAGTATCAGTATTAATTTGTTTAGTATTCGCTAATTCTAAATATTGTGTATAAGGCATAACCACAAACTGTGGTTGCCCTTGTTCATTATTAATAAACTGTATGTTATTAGTAAGTGCGTTCATCTCGTTTTTTCACCTCTTCGATAGAAACAATATGAATAATGCCATCAAAATTAAAAAACACTCGATAATTTCCAACTCTTAATCTGTACTGATATTTGTAGTTAGTCAGAGATTTTACATTAATGCAATTAGGCATGTTTG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 86168-85781 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASE01000009.1 Gilliamella apis strain NO16 NODE_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 86167 28 100.0 32 ............................ ACGCTGCCCGGGCGAGATTTTCGCTGCTATCG 86107 28 100.0 32 ............................ TACCAAAAAAATAATTCAAAAATAATTCAAAA 86047 28 100.0 32 ............................ TCGTTACGCCAATATTTGTTTTCAAATTGTTT 85987 28 100.0 32 ............................ TGCACTGTCCGCTAGCGCTGGTATAGCAATGC 85927 28 100.0 32 ............................ ATTGATTTGGTCACCGTAAGATAACTCGCCTA 85867 28 100.0 32 ............................ ATTCATTTATCCATCCGTTACCAAATTCTCTT 85807 27 92.9 0 .....................A-..... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : GAAAAATAACATTAGGGCGTTAAACAATCATTGCCCTGCTAAGGCAATGGCGTTGATGCTGACGAAGTTGGCGATAAAATCGATTTTGTGGTGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAAAGCGAACGAAGACGGAGGGCAGTCACGCAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAAAAATAACCACAAAACAACAAACGTCCGAAACTCAAACAACTAAAAAATTTGAGGAGAGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATTTTTAAAAATCAATATGTTGAAAAACCGCTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATATAAGTGGTGGCATGGGTAACATCAAGAAGTACACTGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAGAGGGGATAAAGGGTATATTATTTCTAATAAACAGCAAATAATCGATGCTCTTTTCGAGCTATTACTGTTCTTCTTTACAAATGTTAACAATTAAACAGTTAAAATAAGTTGCATCGAGTTTTTTCAATTACTATAATTTTCCACTATATTTATATAAATGGATAGATTTTATACTTTTTAGTATAAAATTGTAAATAAATCATTAATTTAATTGACAGGAATGTCGGATATGTGTTATAATTTACAACACCAAACACCAAACACCAAACCTGCCCAACCCATAATTTAACCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTAATCACAGTTTATTTTTTCAACAAATTCAGCAAAATTTTTCAAAATTTCTTAATTTAGCCTTTTTATTTCGGCCGATGGTTTTGGTATTAACCTTGGTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7078-6865 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASE01000017.1 Gilliamella apis strain NO16 NODE_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7077 29 96.6 32 ............................A GAATCAATTTCAATTTCATCAATAAATAAATC 7016 29 100.0 32 ............................. AAGGTATCGATTTAATCGACCAGATTTTACCG 6955 29 100.0 32 ............................. GAACTTTTCGCGTCAAATTTTGTTCTATCTCC C [6950] 6893 29 82.8 0 .....................C..TTGA. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.9 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : ATTAATGAAATAGTACATGTTAGACGTTGATCGGCTTGAGAAACATATATCTGACGCATTAGGAATCCCATTACATGAACTTTGGCCTTCTCGTTATGTTCGGGGAAAAAGGTAAGGAGTAAGTTTAAGGCTGCATTAAGCGCTATTTTGTTTTTTTATTTTTTGAACTGGTAATAAATTGATAGCGGCTTTTTTGCCAATCAATCCACTGGCTTAAAGCATCAAGTTGCATGATGTTTATTTGTTTTAAAAAATTTTTACGCCAATAAATTAAAGTCCGTTTTGAAACACCTAATTGTCGATCAATTCCAGCATGACTTATCCCTTCACTTATAAGGTCTATGTAGGGAAGCCATAAGTCTATAAAGTGCATTTTATGAAATGGGGTATTTGTTAATGGATTAAACGACTTATTACAATGCGTACATATAAATTGGGGACGATCAGGATTGATGATAGGGCTAATCAATCTTGGGCATTTTTTATGACAATGCGGGCAT # Right flank : TTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCTGGCGGTTTTTTATTGCCCAGAATTCCTAAATAACTTACTATTGCCAAAAAAGGAGATGGCATGAAAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAGGAGATGTTACTTGGTGAGTGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATCATCGATAAAAACAACA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11807-11533 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASE01000017.1 Gilliamella apis strain NO16 NODE_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11806 29 100.0 33 ............................. GTTTTTAGTCGTGAATATTGGTCGGGAACACCT 11744 29 100.0 32 ............................. GGAAAGGGCGAGAATGAAGAAATCACTGAGCC 11683 29 100.0 32 ............................. CCTGCCATTTATGATTCCTTGCTATTTTCTAT 11622 29 100.0 32 ............................. TATATCTCAATCCAACACAAATTTTTGTTGTG 11561 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTTAATGATGATGGTGAACCAACCAGCACCGCCGGCCGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTAGTGGTGGTCACCCGCTACTTTGGTGGCATCAAATTAGGCACAGGCGGACTCATTCGGGCTTACGGTGGTTCGGCTAGTCACTGCTTACAACAAGCAGAATTAATCGAACTTATTGCTAGAACATCATTACAATTTCATTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAAATTTTGATGCTGAAGGTGTAACTGTCATTATTGCTATAACACAAGATAATGTAGTCATACTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGCAAAAAAATTGGTAGAAATTGTAGAATGCGTATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : TCTTAAAACCAGAAGATGAAGTAGATTTTATTCTGCCTGGTTATATGCCTATCGTGTGGTCACGTTTTTATGCCAGTGATCTGCACTATGAAAGTATGCTAGGTAAAGGTTGGATACTACCTTATGAGCAGCACCTTTACCAAGAAAACAACATCCTTTACCACGTTGATAATCAGGGAAGAACGCTACCTTTTGAAATTATCGAAGAAGGCCAAAAAATCTATCTTGCTGATGAACAAATTTTTTTGATTCGTACCGAAGGTGGTCATTATGCCATCCAGACCTTAAATGACCAATTCTATTATTTTGGAGAGGTGTTCGATAATGGTGAAAAAGCTTACCTACAACGCATAGAAGATAAGTTTGGTCACTATATCCACTTTAACTATGACAATGACCAACTGACCGATATAACAGCAACAGGTGGTATTAGGCTACACCTACATTACCGACATCCCAAAGGTAAAGTTACTGAAATAGTGCGTATTATTGATAACCAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //