Array 1 228660-229182 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007627.1 Flavobacterium psychrophilum strain CSF259-93 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================== ============================= ================== 228660 40 100.0 29 ........................................ ACTGAAAAAAGCACCATTTTCAATATCAG 228729 40 97.5 29 ..........................A............. GCCTGCAAAAATACCCCTTCTAATAACAG 228798 40 95.0 29 .....................T....A............. GCCTGCAAAAGACCCTTCTCCGATAGTAG 228867 40 100.0 29 ........................................ ATCTGCAAAAGCATCCTTTCCAATAGTAG 228936 40 100.0 29 ........................................ ACTGAAAAAAGACCCATCTCCAATAGTAG 229005 40 100.0 29 ........................................ ATCTGCAAAAGCCTCATCTCCAATAGTAG 229074 40 97.5 29 ..........................A............. GCCTACAAAAGCATACCTTCCAATAGAAG 229143 40 77.5 0 .TG.............A.....C.........TT.TTG.. | ========== ====== ====== ====== ======================================== ============================= ================== 8 40 95.9 29 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : TTAGCCGTTTGAAGCTAACCTTTTATTGTATAAAATATTTTTTTAAAATTACTGAACAATAATTGTTTTTGTTGCCTTACCTTGATTTGTCATTACTTCTACAAAGTAATTGCCTTTTGCAAAGCTTGAAACATTTATTTCTGAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTGCAAAAGCATCCTTTCCAATAGCAG # Right flank : AATGTTCAAAAGCAGATTCTCCAATAGCAGTCACAATATAGTTTTTTGAATTATAAGCTACTGTTTCTGGTATTACCGCAACTCCACTAAAATCAGGGTTTCTAGCTACCTTAGCAGTAAAGGGAGCTTCTGAAGAAGTAATGGTATATCTTATATGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAAAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTATTGTATAATAATTGTTTTTGTTGCCTTACCTTGATTTGTCATTACTTCTACAAAGTAATTGCCTTTTGCAAAGCTTGAAACATTTATTTCTGAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTTACTTTTTCTAATTGTAATCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAGCTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAATTACCAGAA # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAACTGAAAAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [13-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 1425322-1427109 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007627.1 Flavobacterium psychrophilum strain CSF259-93 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1425322 46 69.6 29 TAAT.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG 1425397 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 1425473 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 1425549 46 100.0 30 .............................................. AGCGATGGAAAATGCGCACGAGCTTACGCT 1425625 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 1425701 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 1425777 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 1425853 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 1425929 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 1426004 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 1426080 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 1426156 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 1426232 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 1426308 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 1426383 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1426459 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1426535 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1426610 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1426686 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1426761 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1426837 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1426913 46 100.0 29 .............................................. CAACGGCACAAAAAAATATAATCTACTTA 1426988 46 100.0 30 .............................................. TTCAAAAGTACACTACACCACTCATTGGCA 1427064 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 24 46 98.6 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TTGCGTGGTACATCAAATTAGAAACGCTTGTAGATATGTGGTATGGAAAGACAAAAAACAATTTACAACCGATATGAAACTTGTTTATACAGCACCAACAAAACAAGCTGCCGCATTAGCTTTGGAAGATTTTGCTCAAAAATGGGAATCCAAATATGGTTATGCCATCAAATCCTGGAGAGAAAACTGGGACGAATTAACCGTGTTTTTCGACTTCCCGCTAGAAATTCGAAAAATAATCTATACTACAAATTTAATAGAAAATTTAAATGGAAAAATTAGAAAATACACTAAAAATAAAATGTCATTCCCTACTGATGATGCGGTTCTAAAATCAGTTTATTTAGCTTTAAAAGAAGCAACAAAAAAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAAA # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //