Array 1 412955-414446 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBMW01000001.1 Gardnerella vaginalis strain DNF01149 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 412955 28 100.0 33 ............................ CGGAGAATCAGTTGTTATCAGCGCCAAAAATGC 413016 28 100.0 33 ............................ TTAAATAATTTAAGTAATCATGTTTCCAATACT 413077 28 100.0 33 ............................ CTATTTTCATTAATAGTATTCCACACACTACCT 413138 28 100.0 33 ............................ CATTTATACTATCTGCGCGTTCACGTGAGCAAG 413199 28 100.0 33 ............................ CATTTATACTATCTGCGCGTTCACGTGAGCAAG 413260 28 100.0 33 ............................ CCCCTTCTGCATTGCATTGCGTTCACACTTAAT 413321 28 100.0 33 ............................ CCCCTTCTGCATTGCATTGCGTTCACACTTAAT 413382 28 100.0 33 ............................ CACGCCCGTAATTCCGCAGTTCTATTGGAACGT 413443 28 100.0 33 ............................ CTTAATCGTGAGTTAATCGCGCGTATTATAGTC 413504 28 100.0 33 ............................ TCACCTGTCATAATTATCGACGATGGATTTTGT 413565 28 100.0 33 ............................ CGAAATCCTTTAATGATTGGCGATGATGTATAT 413626 28 100.0 33 ............................ CTGAACTTGATAATTTGGTTAATGTTGCTAATA 413687 28 100.0 33 ............................ CAAAGCTAGGCCGTCCGCCTCGCTCTTTGGTAG 413748 28 100.0 33 ............................ TAGAGTCATCGTAAACGTGTACTGTGAAGCCTA 413809 28 100.0 33 ............................ CTACGCGCAGACCAAGGTTAATCTCGGGACTCA 413870 28 100.0 33 ............................ CCGAACAGAACGCATTCGCAAGTAATAACACAG 413931 28 100.0 33 ............................ GCTAGCACAAAATACCATAACGAAGGCTATTAT 413992 28 100.0 33 ............................ TTGACCAGCACAAAACAGACGCACCAATAAAAA 414053 28 100.0 33 ............................ CACGCCCGAATTGGGTATACTAAGTGTGTCGTT 414114 28 100.0 33 ............................ CGAGTTGAGCGGCAAAGTCGAACATGAAACACA 414175 28 100.0 33 ............................ CAAGGAGATTAAAAATGGTACTTATGATTCAAG 414236 28 100.0 33 ............................ TCGCAGACCACTATCCTTTAGAGCGCTTCGAGC 414297 28 96.4 33 ...............T............ TCGTGGAGTTTTACGAATCCAGCTGGCGACTTG 414358 28 92.9 33 ..C....................A.... TAAGCACCCTAAAAACGCGGCGGGTATAACCAC 414419 28 75.0 0 ..C..............T..ATAA.A.. | ========== ====== ====== ====== ============================ ================================= ================== 25 28 98.6 33 GTATTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCGGATTAGATTTAGCATTAAGAGAATTTATTGATTTTGTGGGAAAATTACCATTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGATGAGAAACTCAGCAGTGCTTTTTCTGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACTGTTCTGCATGAGTATAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCCTGGATGCTAGGCTAACGGCGCGTCTTGTTCTTAATTTGACAGAATTGTTAAAGTTTCTTTCATAAGGTTATAATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : CTACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGCTGATTGTTTTTACAATAGGGTAGGCAAATAAAAAACTTGCCTACCCCTTATTTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGTCCCTTTCAGCTCTTGCCATGATGACGGCAACTCTACGGGGCGGTGTAGGCGACGCATTGCCCAATCGCGGATCGTGTCATAATCCCACGCGGGCTTTGTTGTTAGTACGCCGACTGAGTGTGTTGGTAGTGGGATTAAACCACGGAGGTTACTCGCATCTTGACCATCTAAGGCTGCACGCCTAGAGCGCACGAGATATTGGCGCATAGACTCGTAGCCGACGCCAAGAAGCCGCGCAATATCATGTAGTGATACGAGTACTGTTTGACCGTTCTCATCTAACATAATAGGCTCCTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 670978-671398 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBMW01000001.1 Gardnerella vaginalis strain DNF01149 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 670978 36 100.0 28 .................................... TAATGGTGACATTAAGCTTAAGTCTCTT 671042 36 100.0 28 .................................... GCTGAAGCTAAACAGTCGCGGCATGTAT 671106 36 100.0 28 .................................... TATATATTGGACGGGCGGCACAGGCGTA 671170 36 100.0 28 .................................... TAGCGTGTGTGGTGGTTTTGATGGTTCT 671234 36 100.0 28 .................................... CCAGCCAGGCAACGGCTCAAAACTAGAT 671298 36 100.0 29 .................................... ATTGCGATAGGCTTCTGGCACTAACGTAG 671363 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 7 36 100.0 28 CAATTATATCAAGAATGGTAGAAGCTAATTTTCAAC # Left flank : TAATGGTTCTGGACATACAATTCCTAGCGCTTTATCTGATTTAGCTCAATCATATGGTATTTATGTGGAAAAAGACATGGAAGACTTTCGAGTACCACAATTTGTAAGGAGTGAATTATGAAAGTCGATGAGGACAGTGGTGGCATGTGGTGTTTAGTAATGTTTGATTTACCAGTGAAAACAAAAGTAGAGCGTCACGCTGCAACTGTATTTCGCAATATGCTGCTTGATATGGGGTATGCAATGGTACAATTTTCTGTGTATGTCCGTTATAGCCCCACTCAAACAGGAAATAGAACTTCAGTAAAAATAATTAAGGATAATCTTCCTCCACGTGGATCAATACGCATTTTACATGTCAGTGATCATCAATGGTCATCTGCACAACGTTATTACAATGCCAGGCAAGAAAAGAAAGAGGAGGCTCCCGATATTGCTATGCTTTTTTAATCATAAAATGTCTTATAATGGTTGGAATTCTACCATTCTTGATGATATAC # Right flank : CAAATAAATAAAAACGGGGAAGCTAGAAAGCTTCCCCTGCAGTGATAATCATCAAAACTGCTGAGCAATCAAACTGGATAACAAGTCCAGTCTTATTGAAAATTAGCACTTCAAATATATCATTTTTAAGAAACAAAAGACAAGTGAATTTTTTTAAGTTTTGTTAAAAGATTTGAAAAGTTAACATATCGATATATTCAATGAATGACACAGTTGGAGATATTACTATTATTATGTTTAACATATATGCGTTTTTTAAAAAGTGCATTCTTAGAATGTATGTATGTACATAGATAGCATCCATATATTCATAATGGGAACGTTACTAATGCAGCGTTCCCATTATGTTTTTTATAATATGCGACTTTATATGCGATTTACCAAATGTGTACGCGCTCGCTTGGAGCAAGCCACATCTCGTCGCCGTCTTTAACGTCGAAAGCATCGTAGAACAAGTCAACGTTGCGCGCAATGCCATTAGTGCGGCATTCTGCAGGGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATTATATCAAGAATGGTAGAAGCTAATTTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //