Array 1 340590-340885 **** Predicted by CRISPRDetect 2.4 *** >NC_015587.1 Hydrogenobaculum sp. SHO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 340590 29 89.7 38 .....G.T...G................. CAAGATTCTAACCCTGGGAACATCTCACTAAGTTTTAG 340657 29 89.7 37 .....G.T...G................. CCGCTAGTGACAACAAACTGTAGTGCATGACCAATAA 340723 29 100.0 38 ............................. CGCACGCACAAAAACTGCACAAAAACTGCTAAAAAATG 340790 29 100.0 38 ............................. CTATAGTGAATAACATCATTTTTACATTTTGCAATGAG 340857 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 95.9 38 GTTTTTTGTGTACCTATAGGGGATTGAAA # Left flank : GAGCTTAAAAGTATCTCTTCTTATATAACAGAAAAGTTAAAGGCTTTGGATTTGAAAGAAGATATACAAACGCTTATGCAGACCGAAGGCGATGTAAGGAAAACCTATTATCAGGCTTTTAACAGTATACTAAAAGATATGGAATTTGAAAAAAGAACCAAAAGACCACCGGAAGACCCTTTAAACGCCATGATATCTTTTGGCAATTCACTACTTTATACTACAGTGCTTAGTGAGATATATAAAACGCATTTGGACCCGCGCATAGGATACCTTCACGAAACAAACCAAAGAAGCTTCACTTTAAACCTTGATATTGCAGAAGTTTTTAAGCCGGTGATTGTGGACAGAGTAATTTTTCAGCTTTTAAATAAAAATCAAATAACTGAAAAGCATTTTGACAAAGATATAAGTTTTGCTTACCTAAACGAATCAGGGCGAGAGATATTTGTAAGAAGTTTTGAAGAAAAGCTAAATACAACAATAAAATACAAAAATAT # Right flank : AAGAGTTTTTGTTAGGTTATAGAATAATTGCTGAGATATATAAGAATGTCATGGTTTATGCGTTCACAATGTAGTGAATTTGTAAAATACATTGACAAAATGCATAAGTTGTCATATAATATACTATAATATGAAAATATAAATTAAGATATTTAAGGAGACTTGTCAATAATTTTGTGTCTCATAACAAAATCTCCTGTTGAATATTTGTAAAACTTCATATGAGGACCCTTTTAATGCAGGAACTGGCTTACTCCACTTATTGTTCTTTAAAATATCTCTCTGGACAAGGATATTTATTTCAAGAATCTCAGCAGATTGGAAATAGCCTCCTAAGTTTATCCTTGCTTTTTCAATCATGCTATTTATACTTTCTACGGGATTGGTAGTATAAATATGCTTTCTTAGATTTTCTGGATATTTCAAGAAGCATAAGTACCTTTCTTTGTTAGCTTTTATCCTTTTTATGAAGCTTGGATAAATAGACTTAAATCTCTCAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTTGTGTACCTATAGGGGATTGAAA # Alternate repeat : GTTTTGTTTGTGCCTATAGGGGATTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 2 346998-347159 **** Predicted by CRISPRDetect 2.4 *** >NC_015587.1 Hydrogenobaculum sp. SHO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 346998 30 100.0 35 .............................. ACAACACCTTTGCCGTTTACAAGCACGTTTGAAGA 347063 30 100.0 37 .............................. TGATTTGACAGCATCAAATACAGTTGCAATAATCTGA 347130 30 93.3 0 ............................AA | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 97.8 36 GTTTCATCTGAACCGTGTGGGTTAAGAAGC # Left flank : ACTTGTGAATCGTGGCATACTTGTCTTTATAGGTGCTCACTCAACTTATACACCTTCGGATTAAAATATGTTATACTATCTACATTGGGGCTTATTGAGCTTCTTAAGTTTTTCTTAAGAGCTGGCCGCACTTCAATAGCTGAATAAGCGTAGAGAGTGTTGGTATGCTTGTGTTGAACCCCACGGCATTTTTAACTTTTTTAGTTAGGGTTTTTAGTAGGTTGTTTATACAAAAATAAGTTTTATTAGCCTTCCAACTTATTGTCTGACAAGCAATTAATTTTGCCGTAAAACCGTAAAGCCGTAATTACATAAAACCGTAAAGCCGTAATTACGGCGAATTTGTAAAAAGCTTGTTAGACAATTATTTAAACTTGATAACGGTACACTAAACTTTGCAGAATCTGGCATTTTCGGAAAATTACCTTCATTTGCGGGGGGGTACCCCCTTGACAAAACCATTGATACACTATATAATATTAGGAGTAGTGATTTCTGGG # Right flank : AAGAAAACGTATTGTATAAGTTCAGATAGACTGAACATAGAGTGCCTGAGCATGTTTCAGATGCCTGTCTTCTTAAAAGACACTAATCTCATGATGTAAAAAATGCCCTTGGCACACTAGTGCGTGAGCATGTTTCAGATAAGCATGTTCTTAGAATACACTTATCACACGACAAGTATGCCACACAATAGTAAGAAATGCCTTTGGCACACTAGACTCTTGAAGAAGTACATAGAAAATACAACTTTGTAAGATCTACAAATCTACCACGGTTTATGTGTTCACGATGTAGTGAACTTATACACTATAGTATGCCAACGATACTCCTTACATCGTAAGTAAAAAGTTTGTTAAAAATATAAAAGCATTTAAAACATGCTTACAGCATTCTATTTATATCCTATCCAAACTCATTCACTTTGTAGGCTAATTTTACCTATATCAGAATATGCTATATCTCCGGCTATTACATAAGATTTATTTTGATATTTAAAAGCCAG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTGAACCGTGTGGGTTAAGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 591474-592160 **** Predicted by CRISPRDetect 2.4 *** >NC_015587.1 Hydrogenobaculum sp. SHO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 591474 28 100.0 38 ............................ TAACAAAAGCAGAATCATAGGGCTTCCAGCGAACCCTG 591540 28 100.0 38 ............................ TATAAGTATGAAGCGTATGAATATATTATACCTGATAC 591606 28 100.0 39 ............................ TAGTCTCTTCCTCTTGTTGTTTGAAGCTGATTGAAGCCA 591673 28 100.0 38 ............................ TGAATACAGAGTTTGGGTTGCTAAGGATTTGCTTTCGG 591739 28 100.0 38 ............................ GTATTGACCTGGATTCTTTTCAAATGTGGTGAGTATGG 591805 28 100.0 38 ............................ GTGCTTTCTTGGATCCAATGTTACTTCAAAATTAAATT 591871 28 100.0 37 ............................ GTATAGTAATTCTTCAGAGTTTGAAATTTTCTCTGAC 591936 28 100.0 38 ............................ GTTCAATTTTTGGTGTAGTTACTGATGCTTTAAACTTT 592002 28 100.0 38 ............................ GTCGCTTTGTGATTTTTGTATTCCTGCGATATCTCCAT 592068 28 100.0 37 ............................ GGATTTTGGATCTGATGTATGGCAATTTATAGATCAG 592133 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 11 28 100.0 38 GTTTCATCTGAACCGTGTGGGATATAAA # Left flank : TGTTATAATTTTTTTGTATGTATGTGTTCACGATGTAGTGAACTTGTACAACTTATACAATTCGGATTAAAATATGCTATAATATTTACATAGCCATTAGGGCTTATTGAGCTTCTTAAGTTTTTCTTAAGAGCTGGCCGTACTTCAATAGCTGAATAAGTGTAGAGAGTTTTTACATACTTTTGATAACCCCACGGCATTTTTAACTTTTTTAATTAGGGGTTTTAGTGAATTGTTTATACAAAAATAAGTTTTATTATCCTTCCAACTTATTGTCTGACAAGCAATTAATTTTGCCGTAAAACCGTAATTACATAAAACCGTAAAACCGTAATTACGGCAAATTTGTCAAAGGCTTGTTAGACAATGATTTAAACTTGATAACGGTACACTAAACTTTGCAGAATCTGGCATTTTCGGAAAATTACCTTCATTTGCGAGGGGTACCCCCTTGACGAAACCATTGATACACTATATAATTTTAGGAGTAGTGATTTCTG # Right flank : ATTATATATACCTCCCAAACTTGCGTTTATATTTAAAATACTACAACACAATTAACTTGACAATGCTTTTTATAAGTTCAATATATCGTGAACACATAAACCTTGCTTATAAAACGTGGCATGCTCGTCATATGATAAGTATTTGTTAAAAAGATAGGTATCTGAAAAGTGGTAAACCACTCTGCATTCATAGTCTATCTGAACTTATACATACTGTTTGATTAGCTTTTATGGTTTTTATTATAGTCAAATAAATTATTCACGTTACTATTAGTAAAATGGGGGATCTATAAAATGAGGGTAAGAATAGTGCTTAAAACAGATGAAATGCCACTTTTATATAGGCATAGGATTATATCTTTAATTAAAGAGGCACTTATGAGGTCCGATAAGGATTATAAGGAATTTTTGTACGATGGTAAGATAACAAAACCCTTTACCTTTAGCTTGATGTTTCCTAGAACAAAAGAATTTGTAAATAAAAAGGTTATTATAAATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTGAACCGTGTGGGATATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 4 929221-928075 **** Predicted by CRISPRDetect 2.4 *** >NC_015587.1 Hydrogenobaculum sp. SHO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 929220 29 100.0 35 ............................. TTGGCATCTACAAATTTAAACTGTATCTTTGGAAG 929156 29 100.0 38 ............................. CCTCTATCAGGCTTGAAATCTTCATTTTTTAATATCGC 929089 29 100.0 36 ............................. TTTTACAATATTGACTCTAATCTATAAAAATGATAT 929024 29 100.0 42 ............................. CCATATCATAAAAAAATACTCTATTTCTTGATACAAATCATA 928953 29 100.0 36 ............................. TTAAATTAGGGAATGGTGTTTGAAATTCAAAACTTG 928888 29 100.0 37 ............................. TCCAGAGTTTATGCTTTGGTGTAGAGTGTATAAGTGT 928822 29 100.0 36 ............................. TCTTGTATATCAAATGCAAACAATCCTAATGATTCT 928757 29 100.0 37 ............................. GCTTGTTCTAAGAGTTTGAAAATCCTAATCCACAGCT 928691 29 100.0 37 ............................. ATCATGGACGCTGCGATTGAACTACTTGCTTACAACG 928625 29 100.0 35 ............................. CCTTTTAAGATTTTCTTCATTTTCTTTTCTCGCAA 928561 29 100.0 37 ............................. ATGGCTTGGCATATTAGACCCTGTCAAACTAAACACA 928495 29 100.0 34 ............................. ACACATTTTAGCGTCACAGACAATGATGGACTGA 928432 29 100.0 38 ............................. TACTTCTTTTACATTGTTAATGTTCCTTTCAACAAAGT 928365 29 100.0 37 ............................. AGTCAATCAAGCAGTGCAAGACTTTATAAATTGGACT 928299 29 100.0 37 ............................. CTATCTACTACGCTAAATCTTTAACGTGGGATGGACA 928233 29 100.0 36 ............................. CTTTACGAAAGATTGAAGCCAAAGAGAAAGAAATTT 928168 29 100.0 36 ............................. TTGCTTTAAATGTGTTGTGGAAGGTGTGTAATAATA 928103 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ========================================== ================== 18 29 99.8 37 GTTTCATCTGAACCGTGTGGGTTAAGAAG # Left flank : TGTCTTATAACATGTCTCTGTTAAAAAGACAGGCATATAAGACGTGCTCACTCAACTTATACACCTTCGGATTAAAATATGTTATACTATCTACATTGGGGCTTATTGAGCCTCTTAAGTTTTTCTTAAGAGCTGGCCGTACTTCAATAGCTGAATATGTGTAGAGAGTTTTTACATACTTTTGATAACCCCCACGGCATTTTTAACTTTTTTAGTTAGGGGTTTTAGTGGATTGTTTATACAAAAATAAGTTTTATTAGCCTTCCAACTTATTGTCTAACAAGCGATTAATTTTGCCGTAAAACCGTAAGTACATAAAACCATAAAACCGTAATTACGGCGAATTTGTAAAAAGCTTGTTAGACAATGATTTAAACTTGATAACGGTACACTAAACTTTGCAGAATCTGGCATTTTCGGAAAATTACCTTCATTTGCGAGGGGTACCCCCTTGACAAAACCATTGATACACTATATAATATTAGGAGTAGTGATTTCTG # Right flank : AAGAAAACGTATCCTTTAAATACTGTATGAGTTCAGATAGAGTGTGAGCGCACACCTTGTTAAAAGTATGTGTTCACGATGTAGTAAACTTGTGCATTGATATTGACTTTTACTTTATATATGGTATAATAATAGGCTATTAAGTTTTATAAAATGGAGGCAATATGGATAGCGTGAAGACTATAAGGCCAAAACCACAGGATATTAAAAGAGAGTATTGGATAATAGACGCTAAGGATATGGTGTTAGGAAGACTTGCAGCTAAATGCGCCAGCATCTTAAGGGGTAAGCACAAGCCTATATATCAACCAGATGTAGATTGTGGTGATTTTGTAATAGTTATAAACTCTAAACTGGTAAAAACCACAGGTAATAAGCTAAGAGATAAAGTCTATAAGTTTCATACAAACCATCCAGGCGGTCTCAAAGAGAAGTCTCTTGGTTTCATGTTGGAAACCAATCCAAACCAAGTTATTATGTTGGCGGTAAAGAGGATGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTGAACCGTGTGGGTTAAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 930815-931239 **** Predicted by CRISPRDetect 2.4 *** >NC_015587.1 Hydrogenobaculum sp. SHO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 930815 29 100.0 36 ............................. TGATTATGAGTTATTGACAAATGATACGGTACAATG 930880 29 100.0 37 ............................. TTTTGGTGTGTTTTATAAAGCCAACAAGAACGATAAA 930946 29 100.0 39 ............................. TGTGTAAGAGTGTAGGATAATGATGCCCAATCATATGAT 931014 29 96.6 37 ............A................ GAATTGAAAAAGGTACCACACAAGTGGTACCTCATTG 931080 29 100.0 36 ............................. AAGAGGATAACTCTTTCCAGCAATCCACACTACCGT 931145 29 100.0 37 ............................. TCTTACCTACTATTTGACCTTCATACATAATAAAGCG 931211 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 7 29 99.5 37 CTTCTTAACCCACACGGTTCAGATGAAAC # Left flank : CGATTTAAATCTATAAGTATATAGTTTAGCTTAGATGCGTATTTTTCTAATTTGGTATTTTTAACAATAGGTAAAGATGTGGGTACGTTCCATTCACCTTTTCCATGATAAAAAACAATGTTGATAATAGGAGGGTAATAATCTTTTTCTTTTATAGCTTCTTCCCAGATAGCGGCGTTGTAGTATAGAAGCTGAATAGGTAATTCTTTATCAAGATAAGATTTGTGTTCAAGTACAATCCTTATATAAGCATCTTGATCTTCTACCTTGCAGCTAAAAAGTAAATCAAGCATAAACTTTTGAGATTTAGAAGAAAACTTTTCTGTATTAACAGGTGTTATAGAGTGTATCTCTTGCCCTATATCTTTAGCAAAGATATCAAGAAGCAATTTTACCCTCTTAGGGTCAGAAAATATCTGCTTAAAAAATGAATCATGGGGCTGTATATCCATAGATCTATTTTACTACAAATTAAAAGTATTTAGAGGATACGTTTTCTT # Right flank : CAACAAGCCTTTTACAAATTTGCCGTAATTACGGTTTTGCGGTTTTATGTAATTACGGCTTTACGGTTTTACGGTAAAATTAATTGATTGTCAGACAATAAGCTGGAAGGCTAATAAAACTTATTTTTGTATAAACAATCTAATAAAACCCCTAACTAAAAAAGTTAAAAATGCCGTGGGGGTTATCAAAAGTATGTAAAAACTCTCTACACATATTCAGCTATTGAAGTACGGCCAGCTCTTAAGAAAAACTTAAGAAGCTCAATAAGCCCCAATGTAGATAGTATAACATATTTTAATCCGAAGGTGTATAAGTTGAGTGAGCACCTATAAAGACAAGTATGCCACGATTCACAAGTCTGCCACACCCTACAAGTCTGCCACACCCTACAAGTCTGCCACACCCTACAAGTATGCCACGGTTTGGTACCTATACTTCCCTTCATGGTACCCACCACACTTAACTCCTTGTAAAATTTTAAGGAATATTTTAACAAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTAACCCACACGGTTCAGATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 6 1024497-1024000 **** Predicted by CRISPRDetect 2.4 *** >NC_015587.1 Hydrogenobaculum sp. SHO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1024496 30 100.0 38 .............................. AGTTTGTTTTTTATCACAAAGCCCCAATTTTTAATCTT 1024428 30 100.0 37 .............................. TCCATAATCGGCACTTTATTAGTTTTGATGTCAATGT 1024361 30 96.7 37 ...............G.............. AATGATACCACACAAGAAAGCGACACACAAGAAGGAA 1024294 30 100.0 34 .............................. TATTTTAATATTTGATTCATTATTTCCCTAATTT 1024230 30 100.0 39 .............................. TTTGATTAAAGAGTTTGACTTTACACCATCATTGTTTAA 1024161 30 96.7 36 ......C....................... TCCTCCTCGAATATCGGCGTGACGCCGACTTGAAGA 1024095 30 96.7 36 ......C....................... AATCTTCTATATCGTCTAATATACGCTCTATCAATA 1024029 30 86.7 0 .........................T.CTT | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 97.1 37 GTTTTGTTTGTACCTATAGGGGATTGAAAC # Left flank : GACACCTGCGCTGGGGAGTTTAGGGCTTATACGCCTTATTATTACTCCTCTTGGGAATATCCATACTATAAAATCGGGCAAGAAGAAGCTATTTTTGACAACGACTAAATTTTGCATAAGTCCAAAAACTACTGCCAAAGATAGACATAAATAAACCATCTCATAAAGATTTTATTTCCTAATTTTATTTTCTAAAAGCCTAAAAATGTTAATATAATTTCTAAATTATTAACATCAAAATCCCCAAAATCATTGTCTATCAACGATCTGTCGATCGGCAAAAAATTATTAAAAAACGCCTTGTTTTCAAACAAAAAAATACCTCATTTTTGGCATCTCAGCTATATCTGACAAAGAATTGTCGATCTCCTATGATTTTGCTCCTATTGACGATCGACGGGAAATATGTTATATTATAAGCTGTTGATAGGTTGATGGGGTACCTCAAAAACCTTGCCGGCGAAGGGTTTTAGGGTAGTTCACAATTTTTTCATTTTGGT # Right flank : TTGTAAATAATGTTAGTAGTAGCAATTTCTGGTTTCATCTGAGCCGTCTGGGTTAAGAAGCTGTGAAATCATATCCTTTAAATACTTTTGATTTGTAGTAAAATAGATCTATGGATATACAACCTCACGATACATTTTTCAAGCAGATATTTTCAGATCCCAAAAGATTAAAGATGCTTCTTGATATCTTTGCAGAGGATATAGCACAGGATATACATTCTATAACACCCGTTAATACAGAAAAGTTTTCTTCTAAATCTCAAAAGTTCATGCTTGATTTACTTTTTAGCTGCAAAGTAGAAGATCAAGATGCATATATACGGGTAGTACTTGAGCACAAATCTTATCTTGATAAAGAACTACCTATTCAGCTTTCATACTACAACAGTGCTATCTGGGAAGAAGCCATAAAAGAAAAAGAGTATTACCCTCCTATTATCAACATCGTTTTTTATCATGGAAAAGGTGAATGGAATATGCCAACATGTTTACCTATTGTT # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTTGTACCTATAGGGGATTGAAAC # Alternate repeat : GTTTTGCTTGTACCTATAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 7 1088875-1092207 **** Predicted by CRISPRDetect 2.4 *** >NC_015587.1 Hydrogenobaculum sp. SHO, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 1088875 29 100.0 39 ............................. ACTTATGCAAAAGTATCTATTACATTAGAACTATCAAAC 1088943 29 100.0 40 ............................. CCTGACAAAAATGAGAGCATAACACTTCCTACTTTTGCAA 1089012 29 100.0 36 ............................. TTATCACACGTGCAAGTGTTTTGTGTTTTGATATGA 1089077 29 100.0 35 ............................. TTGTCTCGTAACATTAAAATTCGTTGGAGTTGTAT 1089141 29 100.0 38 ............................. TCTTCAAAGCATACGTCAATAGTCTGCCAGCTTTGAGA 1089208 29 100.0 37 ............................. CTAAATTTTGAAAGTGTGGAGGATATGAAATCTTTTT 1089274 29 100.0 37 ............................. ATTTCTTGAGATAATTTGATGATAGAAATATTTTTCT 1089340 29 100.0 36 ............................. GTTAAAGAATCGTTTGAAAAACAGCAAATAGCAGAA 1089405 29 100.0 35 ............................. ATCTCCTACAGCACTCCATTGATAATATGTTATTT 1089469 29 100.0 36 ............................. TTTGCAGTTAGCTTCTTCAATAGATTGATGTTTATA 1089534 29 100.0 36 ............................. TTACAAGTTTGTAAAACATCTCTTAAAAGCTTGTTT 1089599 29 100.0 38 ............................. TCGCACAGCTAAACAGCAACAGACTACTTGCTAAAATA 1089666 29 100.0 39 ............................. AACTCAACATCATGCAAATCTGGGACTGCTTCTTTTTGC 1089734 29 100.0 40 ............................. CCAAAATATACTTGATAAAAACGATAAACAAGCACATTCG 1089803 29 100.0 37 ............................. TTATCTCATCTTTTTGTAGGTATCTCAATACTCCTTG 1089869 29 100.0 38 ............................. TTTTTTAGCATCACTTTTTAACGATGCATTAGGTTTAA 1089936 29 100.0 36 ............................. TTGTTGGATAAGTGATTTTTACTTTGTACTTCATGG 1090001 29 100.0 37 ............................. GAAGCTGTCAATCTAAACACTACTTTGTAATTATTTG 1090067 29 100.0 36 ............................. TTTTGCATCAAGCGTATCAGGAACCAAAACTTTCGC 1090132 29 100.0 39 ............................. GCACTTGCAAGTGCCACTTTGCGAGCCAATGCGAATAGA 1090200 29 100.0 36 ............................. TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT 1090265 29 100.0 37 ............................. ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC 1090331 29 100.0 36 ............................. TTCCTTGGCGCTCTTTCTACTCTTGATATCACAGAA 1090396 29 100.0 37 ............................. TTTAGAAGAGCTTCAAGATTAAGTTGCTTTTCCATCT 1090462 29 100.0 36 ............................. AAATAGCAGCCCAGCTCCAACCCCACTGTCTTTCAG 1090527 29 100.0 36 ............................. ATGTCAACATGTATTGGTCAAAAGCTGAAGGAAGGC 1090592 29 100.0 37 ............................. TGAGCCATATTCTCAGAGATTGGCTGGTGTAATAGCA 1090658 29 100.0 36 ............................. GACGGTGTGCGTGGTCTTACGGGGGATGTCATTTTA 1090723 29 100.0 38 ............................. GACAAAGACTTGATTGAAGATTTGCACTCAGTCAAAAA 1090790 29 100.0 37 ............................. CGTTGAGTTGTGAGTATCACTTTGATATTTTGCATGA 1090856 29 100.0 36 ............................. TATTCTATTTGCAATCTCTTCAGGCTTGAGGGCTCT 1090921 29 100.0 36 ............................. CTTAATCACTTCAAGCCGCAGATGTGTATCTCCTTG 1090986 29 100.0 36 ............................. TAGAGCATTTGCACTCATAGATGCTCCAGTAGGACT 1091051 29 100.0 37 ............................. TAAGTTTTTGCTTAAAACTTCTTCTAAAGAAGCTGCA 1091117 29 100.0 36 ............................. AACACAGACGCAAACCTTTTAAACGCAAACGGTGTA 1091182 29 100.0 42 ............................. ACGTTTTTCACACGACCTAACGCATCTATGTGTTTCATCTGA 1091253 29 100.0 37 ............................. ACAATTGCTGAAAAAGTGGACGATGACAAGAAGAAGA 1091319 29 100.0 36 ............................. GAAGTAAACAAAGCTCTGTTGCTTCTGGCGGCTTCT 1091384 29 100.0 36 ............................. CTACCAATCGCATCTACGCCTATCACCTTCCAACCA 1091449 29 100.0 37 ............................. TTGATTACAAACATTATCAACGCACTTGTAAAACAAA 1091515 29 100.0 37 ............................. GAGTAAGCGTTTTTTTAACAGAATGGAGGTCTTCTAT 1091581 29 100.0 37 ............................. TAGAGCATTTGCATTAATAGATGCTCCTGTGGGACTT 1091647 29 100.0 37 ............................. GCGTTTGAAAATAGTATTTCTTTTGTGTAAAAATAGG 1091713 29 100.0 36 ............................. TTTAAAATGGCGGAAAGTTCTTGCGATCTGTCTAGT 1091778 29 100.0 37 ............................. ATTAGAGCTTTGTCTTTTTTCAAGAAAGACTCTATTC 1091844 29 100.0 41 ............................. ATATGATACTTTTAGCACTTGCCCGAGCCAGTAGCTAATGG 1091914 29 100.0 36 ............................. ATTACTGAAAAATTGCAACAATTATTAAACTACATG 1091979 29 100.0 39 ............................. CTTCTAAGGTTTGATGTAGTCTTTCAATCATTTGAGGCA 1092047 29 100.0 36 ............................. AGCATCGGGGCGTTTATAAATACCGATGCAAAAACT 1092112 29 100.0 38 ............................. ACAACAAGCGTTTGATAAACGTTAGCGGGAGTTGTTGA 1092179 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 51 29 100.0 37 GTTTCTAATTAACCGTGTGGAGTTGAAAG # Left flank : ATAAATAACTTCAATGATTAAGGGCTTTATAAAAGCCCTGTGAACTTCAACAGCTGAATATGGCGTTAGAGTTTCTAATGAAGATATTCTTCCGCTTTAACAACTCCGCCGTATTTTTCTTTATATTCTTCTAACTCATTTAGCTTTTGGACTATCAGATCTCCCATAGATATTTTCTTGGTTATAGCCTCTATGCGCAAAGCCCGGTGAACATCGGAAGGTAATAAAACTGTTGTTTTAACCAATTTCTTGCCTTTTTTCCTCATAGATTTAAATATATAATCTTGCCGTAAAACCGCAATGCCGTAATTACATAAAACCGTAAAACCGTAATTACGGCGAATTTGTCAAAGGCTTGTTAGACAATGATTTAAACTTGATAGTGGTACACTAAACTTTGCAGAATCTGGCATTTTCGGGAAATTACCTTCATTTGCGATGGGTACCCCCTTGACAAAACCATTGATACACTATATAATTTTAAATATAGTGATTTCTGG # Right flank : GTTTCATTCTACTTTGTAATAAAGGGTTATCTCTTTGTTGTCCCTTATGATTTTTACGCTGAAGCTTTGGCTGTTTCTTAATGTACCTAATATTCTAAAAGCATCTTCTGGAGAGTTTAGGCTTTCGTTGTTTATAGAAAGAAGTATATCACCTGGTTTTATACCCATCTGGGCAAAAAGCGATCCTGGTTTTACGCTTTTAAACATAAAACCTTTTGGAGTAGGTACAAGGTCTATATCGCTAAACATCTTGTAGGGGTTTGATGTAATTTCAAGAAGCTCGTTTCTATTTACTGTATAAGTATTTTGATTTAAACTACCGCTTAAAAGCTCTTTCAAAGAAGGAAGACCGCTTGGTGTATTGGCACTGTTTATCTTAGCACCTTTTGAAAGTTTTAGAGTAAGGGTTTTGCCGTCGTTGCTTGCTATTATATAAAAAGGTTTTATCTCTTCTATTGTAAAACCGCAAAAACTATCTCCTACCATAAGCACTTTTTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATTAACCGTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //